BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40580.1
Length=1140
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483115 jgi|Araly1|483115|fgenesh2_kg.4__2175__AT2G40580.1 1109 0.0
Ahg934882 jgi|Araly1|934882|scaffold_402870.1 654 0.0
Ahg934440 jgi|Araly1|934440|scaffold_402428.1 632 1e-180
Ahg345516 jgi|Araly1|345516|fgenesh1_pg.C_scaffold_4001858 496 2e-139
Ahg477739 jgi|Araly1|477739|fgenesh2_kg.3__440__AT3G04715.1 200 2e-50
> Ahg483115 jgi|Araly1|483115|fgenesh2_kg.4__2175__AT2G40580.1
Length=1065
Score = 1109 bits (600), Expect = 0.0
Identities = 721/777 (93%), Gaps = 18/777 (2%)
Strand=Plus/Plus
Query 6 TTCTAACCaaaaaaaTACAGAA-CAAG--T--TTTGCTAACCAAAAGAAGTCTTCATTGG 60
|||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||
Sbjct 1 TTCTAACCAAAAAAATACAGAATTAAGTTTAATTTGCTAACCAAAAGAAGTCTTCATTGG 60
Query 61 AGACAGTCTGTGTTC-T-A------GGCAACCTAGTCTCATCATCACTATGGAGATTATC 112
|||| |||||||||| | | |||||||||| || || |||||||||| ||||||
Sbjct 61 AGACTGTCTGTGTTCTTGACTTCTTGGCAACCTAG--TC-TCGTCACTATGGATATTATC 117
Query 113 GAAGATCTAAAAGAGTCTTCATTGGAGACTGTCAGTGTTCTTGGCAAATTAGGTACCTTC 172
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||
Sbjct 118 GAAGATCTAAAAGAGTCTTCATTGCAGACTGTCAATGTTCTTGGCAAATTAGGTCCCTTC 177
Query 173 GGCTTTGTGTCTCTCCAGAGTGATTCAAACTTAGGGAAATCATACGTCAAGAAGACAAGT 232
||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||
Sbjct 178 GGCTTTGTGTCTCTCCAGAATGATACAAACTTGGGGAAATCATACGTCAAGAAGACAAGT 237
Query 233 ACTCTCGAACAGTCCAAGAATCTCGAGAAGGAGCTCAGGATCATGCTTCGTTTCCACAAC 292
| ||||||||||||||||||| | |||||||||||||| |||||||||||||| ||||||
Sbjct 238 ATTCTCGAACAGTCCAAGAATTTGGAGAAGGAGCTCAGAATCATGCTTCGTTTTCACAAC 297
Query 293 AATCCCTTCATAGTCCGAGCTTCAAGCGATCATCTTCACTTTGCGACTAACACCAAAAGC 352
||||||||||| || |||||||||||||||||||||||||| | ||| ||||| ||||||
Sbjct 298 AATCCCTTCATCGTTCGAGCTTCAAGCGATCATCTTCACTTCGTGACCAACACAAAAAGC 357
Query 353 ATGAGTTTGTGTTACATCTACATGGAGTATGCTTCCTTAGGGAATCTCAACAAGATGATC 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 ATGAGTTTGTGTTACATCTACATGGAGTATGCTTCCTTAGGGAATCTCAACAAGATGATC 417
Query 413 TCTGATGCCGGAGGGAGATTGTCTGAAGATAGTGTCAGACGTGCCACTCGTATGATCCTA 472
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 418 TCTGATGCCGGAGGGAGATTGCCTGAAGATAGTGTCAGACGTGCCACACGTATGATCCTA 477
Query 473 CAAGGACTCAAGGCTCTTCACTCTGAAGGTTTTGTCCACTGCGACCTCAAGCCATCAAAT 532
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 478 CAAGGACTCAAGGCTCTTCACTCTGAAGGTTACGTCCACTGCGACCTCAAGCCATCAAAT 537
Query 533 GTACTTGTCTTCCCTTCCAACACACGTGGAGAGCCATGGGATCTCAAGCTTGCTGGTTTC 592
|||||||| |||||||||||||| | ||| ||||||||||||||||||||||||||||||
Sbjct 538 GTACTTGTGTTCCCTTCCAACACTCTTGGCGAGCCATGGGATCTCAAGCTTGCTGGTTTC 597
Query 593 GGTTTATCCAAAGAGCCTACTATGGACTCTAG-CTTGTTGTTTCCTGGAACCCTTGAGGA 651
||||||||||||||||||||||||| | || || ||||||||||||||||||||||||
Sbjct 598 TGTTTATCCAAAGAGCCTACTATGGATTATAAACT-GTTGTTTCCTGGAACCCTTGAGGA 656
Query 652 GTACATGTCGCCTGAGGCCATTGAGCGGGACAGGTTTGTTGGGAAGGACAAACTGATCGG 711
||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 657 GTACATGCCACCTGAGGCCATTGAGCGGGACAGGTTTGTTGGGCAGGACAAACTGATCGG 716
Query 712 ACCAGCCCGTGATATATGGTCTCTAGGACGTATTGTTCTTAGGATGTTTGGGGGTAT 768
||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 717 ACCAGCCTGTGATATATGGTCTCTAGGACGTATTGTTCTTAGGATGTTTGGGGATAT 773
Score = 399 bits (216), Expect = 2e-110
Identities = 274/301 (91%), Gaps = 7/301 (2%)
Strand=Plus/Plus
Query 812 GATATCTCTCCGGAGGCCACAGACTTTGTT-AGGCGGTGCTTGGCATGGCGCCCTTCGAA 870
|||||||||||||| ||||||||| || || ||| |||||||||| ||||||||||| ||
Sbjct 769 GATATCTCTCCGGACGCCACAGAC-TTCTTGAGGAGGTGCTTGGCTTGGCGCCCTTCAAA 827
Query 871 TCGGGCCACCGTGGATGAGCTCTTAGACCATCCTTTTGCTGCTGAAAAACTTCCATTGCT 930
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 828 TCGGGCCACCGTGGATGAGCTCTTAGACCATCCTTTTGCTGCTGAAAAACTTCCATTTCT 887
Query 931 TCTTTCTTTCTTAAGGGTTCCTTCTTTCGTAAGAAGGAATGTCAATG-AAAAATTGAATG 989
||||||||||||||||||||||||||| ||||||||| || || || |||||||| |||
Sbjct 888 TCTTTCTTTCTTAAGGGTTCCTTCTTTTATAAGAAGGATTGCCA-TGGAAAAATTGTATG 946
Query 990 TTAGACAAGAAGAACTGATTCCAAAGCCTCAAGGCTTGCTCTGGTGACAAGAAAATGAAG 1049
||||||| ||||||||||||||||| |||||||| |||||||||||| |||||||||||
Sbjct 947 TTAGACATGAAGAACTGATTCCAAAACCTCAAGGGTTGCTCTGGTGATAAGAAAATGAA- 1005
Query 1050 ACAGAAAT-TATGAACCGAAACTAAACGCCTACTGCATGCAATTTCTCTTCTAATTCTCA 1108
|| ||| | || ||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1006 ACTGAA-TGTAAGAACCGAAACTGAACGCCTACTGTTTGCAATTTCTCTTCTAATTCTCA 1064
Query 1109 A 1109
|
Sbjct 1065 A 1065
> Ahg934882 jgi|Araly1|934882|scaffold_402870.1
Length=974
Score = 654 bits (354), Expect = 0.0
Identities = 687/843 (81%), Gaps = 42/843 (5%)
Strand=Plus/Plus
Query 108 TTATCGAAGATCTAAAAGAGTCTTCATTGGAGACT-GTCAGTGTTCTTGGCAAATTAGGT 166
|||| | |||||| | |||||||||||| ||| | ||| |||||||| | || ||||
Sbjct 34 TTATTGGAGATCTGACTGAGTCTTCATTGAAGA-TAGTCTCTGTTCTTGAC-AA--AGGT 89
Query 167 ACCTTCGGCTTTGTGT-C-TC-TCCAGAGTGATTCAAACTTAGG-GAAATCATACGTCAA 222
| || ||||| ||||| | | | ||| |||||||||||| || |||||| ||| | ||
Sbjct 90 ATCTACGGCTCTGTGTCCAACAACAAGAATGATTCAAACTT-GGCGAAATCTTACATGAA 148
Query 223 GAAGACAAGTACTCTCGAACAGTCCAAGAATCTCGAGAAGGAGC-TCAGGATCATGCTTC 281
|||||||||||| ||| |||| ||| | |||||||||| ||||| | ||| ||||||||
Sbjct 149 GAAGACAAGTACGCTCAAACATTCCGACAATCTCGAGAGGGAGCTTAAGG-CCATGCTTC 207
Query 282 GTTTCCACAACAATCCCTTCATAGTCCGAGCTTCAAGCGATCATCTTCACTTTGCGACTA 341
||||||| |||||||||||| |||| |||||| || |||||||||||| | | ||
Sbjct 208 ACTTCCACACCAATCCCTTCATCGTCCAAGCTTCGTGCCCTCATCTTCACTTCGAGTGTA 267
Query 342 ACACCAAAAGCATGAGTTTGTGTTACATCTACATGGAGTATGCTTCCTTAGGGAATCTCA 401
||||||||||| || ||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 268 ACACCAAAAGCGCGACTTTGTGTTACATCTACATGGAGTATGCGTCCTTAGGCAATCTCG 327
Query 402 ACAAGATGATCTCTGATGCCGGAGGGAGATTGTCTGAAGATAGTGTCAGACGTGCCACTC 461
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 328 ACAAGATGATCTCTGATGCCGGAGGGAGATTGCCTGAATATAGTGTCAGACGTGCCACTC 387
Query 462 GTATGATCCTACAAGGACTCAAGGCTCTTCACTCTGAAGGTTTTGTCCACTGCGACCTCA 521
|||||||||||||||||||||||||||||||||| ||||||| || || ||||||||||
Sbjct 388 GTATGATCCTACAAGGACTCAAGGCTCTTCACTCGGAAGGTTACGTTCATTGCGACCTCA 447
Query 522 AGCCATCAAATGTACTTGTCTTCCCTTCCAACACACGTGGAGAGCCATGGGATCTCAAGC 581
| || || ||||| ||||||||||||||||||| | || ||||||||||||||||||||
Sbjct 448 AACCCTCCAATGTGTTTGTCTTCCCTTCCAACACTCCTGAAGAGCCATGGGATCTCAAGC 507
Query 582 TTGCTGGTTTCGGTTTATCCAAAG--A--G--CCTACTATGGACTCTAGCTTGTTGTTTC 635
|| ||||||| || |||||||||| | | |||||||||||||||||| | | |||||
Sbjct 508 TTACTGGTTTAGGCTTATCCAAAGGCAAAGAGCCTACTATGGACTCTAGCCTATCGTTTC 567
Query 636 CTGGAACCCTTGAGGAGTACATGTCGCCTGAGGCCAT---TGAGCGGGACAGGTTTGT-T 691
|||||||||| ||| |||||| |||||||||||| ||| ||| | |||||| | |
Sbjct 568 CTGGAACCCTCGAG---TACATGCCGCCTGAGGCCACCGCTGAACGGTATAGGTTT-TCT 623
Query 692 GGGAAGGACAAACTGATCGGACCAGCCCGTGATATATGGTCTCTAGGACGTATTGTTCTT 751
||| |||| | || ||||||| ||||||||||||||||| ||||| |||| ||||||
Sbjct 624 GGGCCGGACTTATTGGTCGGACCGGCCCGTGATATATGGTCGCTAGGGCGTACGGTTCTT 683
Query 752 AGGATGTTTGGGGGTATTCCTGTTGAGGTGAGAGGCTCTAACACATGGAGGCTGTACGAA 811
| ||||||||||||| | ||| |||| || || || || | | ||||| | | |||
Sbjct 684 AAGATGTTTGGGGGTGTCCCTCATGAGATGGGAAACTGTATCGCGTGGAGAAT--A-GAA 740
Query 812 GA-TATCTCTC-CGGAG--GCCACA-GACTT-TGTTAGGCGGTGCT-TGGCATGGCGCCC 864
| |||||||| | || || ||| ||||| || |||| |||| | | ||||| ||
Sbjct 741 GGGTATCTCTCTCC-AGCTGC-ACAAGACTTCTGG-AGGCAGTGCCGTA-CGTGGCGACC 796
Query 865 TTC-GAATCGGGCCACCGTGGATGAGCTCTTAGACCATCCTTTTGCTGCTGAAAAACTTC 923
| | || | || ||||||||||| ||||||| ||||||||||||| |||||||||||||
Sbjct 797 TACAGA-TAGGCCCACCGTGGATAAGCTCTTGGACCATCCTTTTGTTGCTGAAAAACTTT 855
Query 924 CAT 926
|||
Sbjct 856 CAT 858
> Ahg934440 jgi|Araly1|934440|scaffold_402428.1
Length=938
Score = 632 bits (342), Expect = 1e-180
Identities = 674/832 (81%), Gaps = 32/832 (4%)
Strand=Plus/Plus
Query 108 TTATCGAAGATCTAAAAGAGTCTTCATTGGAGACT-GTCAGTGTTCTTGGCAAATTAGGT 166
|||| | |||||| | |||||||||||||||| | ||| | ||||||| ||| ||||
Sbjct 35 TTATTGGAGATCTGACGGAGTCTTCATTGGAGA-TAGTCTCTTTTCTTGG-AAA--AGGT 90
Query 167 ACCTTCGGCTTTGTGTCTCTCC-AGAGTGATTCAAACTTAGG-GAAATCATACGTC-AAG 223
| || ||||| |||||| | || ||| |||||||||||| || |||||| ||| | |||
Sbjct 91 ATCTACGGCTCTGTGTC-CACCAAGAATGATTCAAACTT-GGAGAAATCTTAC-ACGAAG 147
Query 224 AAGACAAGTACTCTCGAACAGTCCAAGAATCTCGAGAAGGAGCTCAGGATCATGCTTCGT 283
||||||||||| ||| |||| || |||||||||||| |||||| | || ||||||||
Sbjct 148 AAGACAAGTACGCTCAAACATTCTGAGAATCTCGAGAGGGAGCTTAAGACCATGCTTCAC 207
Query 284 TTCCACAACAATCCCTTCATAGTCCGAGCTTCAAGCGATCATCTTCACTTTGCGACTAAC 343
|||||| |||||||||||| |||| |||||| || |||||||||||| | ||||
Sbjct 208 TTCCACGCCAATCCCTTCATCGTCCAAGCTTCGTGCCCTCATCTTCACTTCAAGTTTAAC 267
Query 344 ACCAAAAGCATGAGTTTGTGTTACATCTACATGGAGTATGCTTCCTTAGGGAATCTCAAC 403
||||||||| || ||||||||||||||||||||||||||| |||||||| |||||| ||
Sbjct 268 ACCAAAAGCGCGACTTTGTGTTACATCTACATGGAGTATGCGTCCTTAGGCAATCTCGAC 327
Query 404 AAGATGATCTCTGATGCCGGAGGGAGATTGTCTGAAGATAGTGTCAGACGTGCCACTCGT 463
||||||||||||||| ||||||||||| || ||||||||| ||||||| | |||||||||
Sbjct 328 AAGATGATCTCTGATTCCGGAGGGAGACTGCCTGAAGATACTGTCAGAAGGGCCACTCGT 387
Query 464 ATGATCCTACAAGGACTCAAGGCTCTTCACTCTGAAGGTTTTGTCCACTGCGACCTCAAG 523
|||||||| |||||||| |||||||| || || ||||||| |||||||||||| ||||
Sbjct 388 ATGATCCTGCAAGGACTTAAGGCTCTACATTCGGAAGGTTACGTCCACTGCGACTTCAAA 447
Query 524 CCATCAAATGTACTTGTCTTCCCTTCCAACACACGTGGAGAGCCATGGGATCTCAAGCTT 583
|| || |||||| ||||||||||||||||||| | |||||| ||||||||||||||||||
Sbjct 448 CCCTCCAATGTATTTGTCTTCCCTTCCAACACTCCTGGAGAACCATGGGATCTCAAGCTT 507
Query 584 GCTGGTTTCGGTTTATCCAAAGAGCCTACTATGGACTCTAG-CTTGTTGTTTCCTGGAAC 642
|||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 508 ACTGGTTTCGGCTTATCCAAAGAGCCTACTATGGACTCTAGTCTA-TTGTTTCCTGGAAC 566
Query 643 CCTTGAGGAGTACATGTCGCCTGAGGCCATTGAGCGGGACAGGTTTGTTGGGA-AGGACA 701
|| ||| |||||| ||||||||||| ||| || | | | ||| |||| || | |
Sbjct 567 CCCCGAG---TACATGCCGCCTGAGGCCCTTGCGCCGAAAACATTTTTTGGCCCAG-ATA 622
Query 702 AACTGATCGGACCAGCCCGTGATATATGGTCTCTAGGACGTATTGTTCTTAGGATGTTTG 761
| |||||||||||||||||||| |||||||| |||| |||| ||||||| |||| |||
Sbjct 623 GATTGATCGGACCAGCCCGTGATGTATGGTCTTTAGGGCGTACGGTTCTTAAGATGCTTG 682
Query 762 GGGGTATTCCTGTTGAGGTGAGAGGCT-CTAACACATGGAGGCT-GTACGAAGA-TATCT 818
||| || |||| || || ||| || ||| | |||||| | | | | | |||||
Sbjct 683 GGGCTAATCCTCAAAAGATGGGAG-CTTCTATCGTATGGAGAATAG-A-GTATCCTATCT 739
Query 819 CTCCGGAGGCCA-CAGACTT-TGTTAGGCGGTGCT-TGGCATGGCGCCCTTC-GAATCGG 874
|| || ||| | || |||| || |||| ||||| | | | ||| ||| | || | ||
Sbjct 740 CTGTGGTGGC-AGCACACTTCTGG-AGGCAGTGCTGTA-CGTCGCGGCCTACAGA-TAGG 795
Query 875 GCCACCGTGGATGAGCTCTTAGACCATCCTTTTGCTGCTGAAAAACTTCCAT 926
|||||||||||||||| || ||||||||||||| |||||| |||||| |||
Sbjct 796 CCCACCGTGGATGAGCTTTTGGACCATCCTTTTGTTGCTGACAAACTTACAT 847
> Ahg345516 jgi|Araly1|345516|fgenesh1_pg.C_scaffold_4001858
Length=585
Score = 496 bits (268), Expect = 2e-139
Identities = 431/509 (85%), Gaps = 13/509 (3%)
Strand=Plus/Plus
Query 221 AAGAAGACAAGTACTCTCGAACAGTCCAAGAATCTCGAGAAGGAGCTCAGGATCATGCTT 280
|||||||||||||| ||| |||| ||| |||||||||||| |||||| | || |||||||
Sbjct 4 AAGAAGACAAGTACGCTCAAACATTCCGAGAATCTCGAGAGGGAGCTTAAGACCATGCTT 63
Query 281 CGTTTCCACAACAATCCCTTC-ATAGTCCGAGCTTCAAGCGATCATCTTCACTTTGCGAC 339
| |||||| ||||||| || || |||| |||||| || |||||||||||| |
Sbjct 64 CACTTCCACGCCAATCCC-TCAATCGTCCAAGCTTCGTGCCCTCATCTTCACTTCAAGTT 122
Query 340 TAACACCAAAAGCATGAGTTTGTGTTACATCTACATGGAGTATGCTTCCTTAGGGAATCT 399
|||||||||||| ||| ||||||||||||||||||||||||||| |||||||| |||||
Sbjct 123 TAACACCAAAAGTGTGACTTTGTGTTACATCTACATGGAGTATGCGTCCTTAGGCAATCT 182
Query 400 CAACAAGATGATCTCTGATGCCGGAGGGAGATTGTCTGAAGATAGTGTCAGACGTGCCAC 459
| ||||||||||||||||| || |||||||| || ||||||||| ||||||||| |||||
Sbjct 183 CGACAAGATGATCTCTGATTCCAGAGGGAGACTGCCTGAAGATACTGTCAGACGGGCCAC 242
Query 460 TCGTATGATCCTACAAGGACTCAAGGCTCTTCACTCTGAAGGTTTTGTCCACTGCGACCT 519
|||||||||||| |||||||| |||||||| || || ||||||| ||||||||||||||
Sbjct 243 TCGTATGATCCTGCAAGGACTTAAGGCTCTCCATTCGGAAGGTTACGTCCACTGCGACCT 302
Query 520 CAAGCCATCAAATGTACTTGTCTTCCCTTCCAACACACGTGGAGAGCCATGGGATCTCAA 579
||| || || |||||| ||||||||||||||||||| | |||||| ||||||||||||||
Sbjct 303 CAAACCCTCCAATGTATTTGTCTTCCCTTCCAACACTCCTGGAGAACCATGGGATCTCAA 362
Query 580 GCTTGCTGGTTTCGGTTTATCCAAAGAGCCTACTATGGACTCTAG-CTTGTTGTTTCCTG 638
|||| |||||||||| ||||||||||||||||||||||||||||| || ||||||||||
Sbjct 363 GCTTACTGGTTTCGGCTTATCCAAAGAGCCTACTATGGACTCTAGTCTA-TTGTTTCCTG 421
Query 639 GAA-C-CCTTGAGGAGTACATGTCGCCTGAGGCCATTGAGCGGGACAGGTTTGTTGGGA- 695
||| | || ||| |||||| ||||||||||||||| || | | | ||| ||||
Sbjct 422 GAAACACC--GAG---TACATGCCGCCTGAGGCCATTGCGCCGAAAACATTTATTGGCCC 476
Query 696 AGGACAAACTGATCGGACCAGCCCGTGAT 724
|| | | | ||||||||||||||||||||
Sbjct 477 AG-ATAGATTGATCGGACCAGCCCGTGAT 504
> Ahg477739 jgi|Araly1|477739|fgenesh2_kg.3__440__AT3G04715.1
Length=779
Score = 200 bits (108), Expect = 2e-50
Identities = 326/427 (76%), Gaps = 31/427 (7%)
Strand=Plus/Plus
Query 248 AAGAATCTCGAGAAGGAGCTCAGGATCATGCTTCGTTTCCACAA-CAATCCCT-TCATAG 305
|||||||||||||| ||||| || ||||||||| |||||| ||| | || ||| ||| |
Sbjct 24 AAGAATCTCGAGAAAGAGCTTAGCATCATGCTTTGTTTCCGCAATC-AT-CCTCGCATCG 81
Query 306 TCCGAGCTTCAAGCGATCATCTTCACTTTGCGA-CTAACACCAAAAGCATGAGTTTGTGT 364
||| ||| |||||| | | ||||||| | || | ||| || ||| || |||
Sbjct 82 TCCAAGCGTCAAGCCCTGTTGTTCACTTAGGGATCCAAC-CC-GAAG---GA-----TGT 131
Query 365 TACATCTACATGGAGTATGCTTCCTTAGGGAATCTCAACAAGATGATCTCTGA-TGCCGG 423
||||||| ||||||| ||| ||| ||| | |||| ||| |||||||| | | | |
Sbjct 132 CACATCTATATGGAGTTTGCCTCCAAAGGCACTCTCTTCAATATGATCTCCAAGTTTC-G 190
Query 424 AGGG--A-GATTGTCTGAAG-ATAGTG-TCAGACGTGCCACTCGTATGATCCTACAAGGA 478
||| | | || ||| || ||| || ||| ||||||| ||| ||||||| ||||||||
Sbjct 191 TGGGAAACCAATGCCTG-AGAATA-TGATCAAACGTGCCGCTCTTATGATCATACAAGGA 248
Query 479 CTCAAGGCTCTTCACTCTGAAGGTTTTGTCCACTGCGACCTCAAGCCATCAAATGTACTT 538
|| | ||||||||||| | || | || |||||||||||||||||| | || || ||
Sbjct 249 CTTGACGCTCTTCACTCACACGGCTACGTTCACTGCGACCTCAAGCCAGCCAACGTCCTC 308
Query 539 GTCTTCCCTTCCAAC-ACACGT-GGAGAGCCATGGGATCTCAAGCTTGCTGGTTTCGGTT 596
|||||||||||| || || | | |||||||||||||||||||||||||||| ||||||||
Sbjct 309 GTCTTCCCTTCC-ACAAC-CTTCGGAGAGCCATGGGATCTCAAGCTTGCTGATTTCGGTT 366
Query 597 TATCCAAAGAGCCTACTATGGACTCTAGCTTGTTGTTTCCTGGAACCCTTGAGGAGTACA 656
||| ||||||||| ||| ||| ||||| | ||| |||||||| || ||| ||||||
Sbjct 367 CATCTAAAGAGCCTTCTACGGATTCTAGGTCGTTATTTCCTGGTACG---GAGCAGTACA 423
Query 657 TGTCGCC 663
|| ||||
Sbjct 424 TGCCGCC 430
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42507052455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5