BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40590.1
Length=640
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483116 jgi|Araly1|483116|fgenesh2_kg.4__2176__AT2G40590.1 857 0.0
Ahg902008 jgi|Araly1|902008|Al_scaffold_0004_2658 616 8e-176
Ahg486074 jgi|Araly1|486074|fgenesh2_kg.5__2066__AT3G56340.1 407 5e-113
> Ahg483116 jgi|Araly1|483116|fgenesh2_kg.4__2176__AT2G40590.1
Length=618
Score = 857 bits (464), Expect = 0.0
Identities = 551/592 (93%), Gaps = 10/592 (2%)
Strand=Plus/Plus
Query 53 GAGAAGAGAGGAATAGCCAAAGATGACTTTCAAGCGAAGGAACGGTGGGAGGAACAAGCA 112
||||| ||||||| |||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 33 GAGAACAGAGGAAAAGCCAAAGATGACTTTCAAGCGTAGGAACGGTGGAAGGAACAAGCA 92
Query 113 CAACAGAGGACACGTCAACCCAATCAGATGCTCCAACTGCGGCAAATGCTG-CCCTAAGG 171
||||||||| |||||||| |||||||||||||||||||| |||||||| || ||| ||||
Sbjct 93 CAACAGAGGTCACGTCAAGCCAATCAGATGCTCCAACTGTGGCAAATGTTGTCCC-AAGG 151
Query 172 ACAAGGCCATTAAGAGGTTCATTGTGAGGAACATTGTGGAGCAGGCTGCTATTAGAGATG 231
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 152 ATAAGGCCATTAAGAGGTTCATTGTGAGGAACATTGTGGAGCAGGCTGCTATTAGAGATG 211
Query 232 TTCAGGAAGCTAGCGTCTATGAGGGATACACATTGCCGAAGCTATATGCAAAGACGCAAT 291
||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct 212 TTCAGGAAGCTAGCGTCTACGAGGGATACACGTTACCGAAGCTATATGCAAAGACGCAAT 271
Query 292 ACTGTGTCTCCTGTGCTATCCACTCTCACGTCGTTAGAGTCCGTTCCCGCACCAACCGTA 351
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 272 ACTGTGTCTCCTGTGCTATCCACTCTCACGTCGTTAGAGTCCGATCCCGCACCAACCGTA 331
Query 352 GGGTTCGTACTCCTCCTCCACGTTTCACCAGACGCAAGGAGGATACTCCCAAGCCTGGAC 411
|||||||||||||||| || |||||| ||||||||||||||||||||||||||||||| |
Sbjct 332 GGGTTCGTACTCCTCCACCTCGTTTCGCCAGACGCAAGGAGGATACTCCCAAGCCTGGGC 391
Query 412 AGCCAGGACAGGCCCCTCGTCCAGCTGGGCCTGGAGCTGCAGCTGCACCGCGTGTCTGAA 471
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 392 AACCAGGACAGGCCCCTCGTCCAGCTGGACCTGGAGCTGCAGCTGCACCGCGTGTCTGAA 451
Query 472 GCCTGCAATCAGCTTAAATTGTAgtttcatttttcaagatttttgtttttcttatgttgg 531
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 452 GCCTGCAATCAGCTTGAATTGTAGTTTCATTTTTCAAGATTTTTGTTTTTCTTATGTTTG 511
Query 532 cttcagattttgtttcCTTGTGAATCTCCTTATGttttttttttttttCAAATAAATGTC 591
||||||||| | || || ||||||||||| ||| | |||||||| || |||| |||
Sbjct 512 CTTCAGATTATATTCCCATGTGAATCTCCAAATGCTGTTTTTTTT----AA-TAAACGTC 566
Query 592 TCGACTTTGTTATTATTATATAT--AAACCTC-ATAGTTTTGCAATTTGCTT 640
||||||||||||||||||||||| ||||||| ||||||||||||| |||||
Sbjct 567 TCGACTTTGTTATTATTATATATGTAAACCTCTATAGTTTTGCAATCTGCTT 618
> Ahg902008 jgi|Araly1|902008|Al_scaffold_0004_2658
Length=396
Score = 616 bits (333), Expect = 8e-176
Identities = 376/397 (95%), Gaps = 2/397 (1%)
Strand=Plus/Plus
Query 75 ATGACTTTCAAGCGAAGGAACGGTGGGAGGAACAAGCACAACAGAGGACACGTCAACCCA 134
|||||||||||||| ||||||||||| |||||||||||||||||||| |||||||| |||
Sbjct 1 ATGACTTTCAAGCGTAGGAACGGTGGAAGGAACAAGCACAACAGAGGTCACGTCAAGCCA 60
Query 135 ATCAGATGCTCCAACTGCGGCAAATGCTG-CCCTAAGGACAAGGCCATTAAGAGGTTCAT 193
||||||||||||||||| |||||||| || ||| ||||||||||||||||||||||||||
Sbjct 61 ATCAGATGCTCCAACTGTGGCAAATGTTGTCCC-AAGGACAAGGCCATTAAGAGGTTCAT 119
Query 194 TGTGAGGAACATTGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGA 253
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 120 TGTGAGGAACATTGTGGAGCAGGCTGCTATTAGAGATGTCCAGGAAGCTAGCGTCTACGA 179
Query 254 GGGATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTGCTATCCA 313
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AGGATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTGCTATCCA 239
Query 314 CTCTCACGTCGTTAGAGTCCGTTCCCGCACCAACCGTAGGGTTCGTACTCCTCCTCCACG 373
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||| || ||
Sbjct 240 CTCTCACGTCGTTAGAGTCCGTTCCCGCACCAACCGCAGGGTCCGTACTCCTCCACCGCG 299
Query 374 TTTCACCAGACGCAAGGAGGATACTCCCAAGCCTGGACAGCCAGGACAGGCCCCTCGTCC 433
||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 300 TTTTGCCAGACGCAAGGAGGATACTCCCAAGCCTGGGCAACCAGGACAGGCCCCTCGTCC 359
Query 434 AGCTGGGCCTGGAGCTGCAGCTGCACCGCGTGTCTGA 470
|||||| || |||||||||||||||||||||||||||
Sbjct 360 AGCTGGACCCGGAGCTGCAGCTGCACCGCGTGTCTGA 396
> Ahg486074 jgi|Araly1|486074|fgenesh2_kg.5__2066__AT3G56340.1
Length=642
Score = 407 bits (220), Expect = 5e-113
Identities = 346/407 (85%), Gaps = 7/407 (2%)
Strand=Plus/Plus
Query 75 ATGACTTTCAAGCGAAGGAACGGTGGGAGGAACAAGCACAACAGAGGACACGTCAACCCA 134
|||||||||||||| ||||| ||||| ||||||||||| ||| | || || || || |||
Sbjct 98 ATGACTTTCAAGCGTAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTGAAACCA 157
Query 135 ATCAGATGCTCCAACTGCGGCAAA-TGCTGCCCTAAGGACAAGGCCATTAAGAGGTTCAT 193
||||| || |||||||| || ||| || ||||| ||||| ||||| |||||||| |||||
Sbjct 158 ATCAGGTGTTCCAACTGTGG-AAAGTGTTGCCCCAAGGATAAGGCGATTAAGAGATTCAT 216
Query 194 TGTGAGGAACATTGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGA 253
|| ||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 217 CGTCAGGAACATTGTTGAGCAGGCTGCTATTAGAGATGTTCAAGAAGCTAGCGTCTACGA 276
Query 254 GGGATACACAT-TGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTGCTATCC 312
| ||||| | | || ||||| || || |||||||||||||||||||| ||||||||||
Sbjct 277 AGCTTACAC-TCTCCCAAAGCTTTACGCTAAGACGCAATACTGTGTCTCATGTGCTATCC 335
Query 313 ACTCTCACGTCGTTAGAGTCCGTTCCCGCACCAACCGTAGGGTTCGTACTCCTCCTCCAC 372
|||||||||| ||||||||||| |||||||| ||||||||||||||||| || || || |
Sbjct 336 ACTCTCACGTTGTTAGAGTCCGATCCCGCACTAACCGTAGGGTTCGTACCCCACCACCTC 395
Query 373 GTTTCACCAGACGCAAGGAGGATACTCCCAAGCCTGGACAGCCAGGACAGGCCCCTCGTC 432
||||| ||||||||||||||||||||||||||||||||||||| || ||||| ||||| |
Sbjct 396 GTTTCGCCAGACGCAAGGAGGATACTCCCAAGCCTGGACAGCCTGGTCAGGCTCCTCGCC 455
Query 433 CAGCTGGGCCTGGAGCTGCAGCTGCACCGCGTGTCTGAAGCCTGCAA 479
| ||||| ||| ||| | ||||| || |||| || ||| || |||
Sbjct 456 CTGCTGG---TGGTGCTCCTGCTGCTCCTCGTGCCTAAAGACTTCAA 499
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23445593955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5