BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40600.1
Length=940
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483117 jgi|Araly1|483117|fgenesh2_kg.4__2177__AT2G40600.1 1033 0.0
Ahg934868 jgi|Araly1|934868|scaffold_402856.1 372 3e-102
> Ahg483117 jgi|Araly1|483117|fgenesh2_kg.4__2177__AT2G40600.1
Length=827
Score = 1033 bits (559), Expect = 0.0
Identities = 718/792 (91%), Gaps = 21/792 (3%)
Strand=Plus/Plus
Query 16 ACGACTCAAATGAGACGACAATGGTTGACCTCTGGACTCTCGAG--T-CTCCCTGGATTA 72
||||||||||||||||||| ||||||||||| |||| ||| ||| | |||||| |||||
Sbjct 1 ACGACTCAAATGAGACGACTATGGTTGACCTGTGGAGTCTTGAGTCTCCTCCCTAGATTA 60
Query 73 CTACACTCGAGCTCGACGATCCTTAGACCAACTTCGTCTTCTTCCTCGAGAGCTTCTCTG 132
|| |||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 CTTCACTCGAGCT---CGATCCTTAGACCAACTTCG---TCTTCCTCGAGAGCTTCTCTG 114
Query 133 ATCTCCTTC-GC-CGTTAATAATTTCCAC-ACGATC-GCTTCT-TCTTCGT-CTACTCTC 186
| |||| | | | || | ||| | || || | ||| ||||| | ||||
Sbjct 115 AGCTCCGCCACCTCCTTCGTCGCTTCTTCTTCG-TCTAC-TCTCTCTTC-TCCTACGAGG 171
Query 187 TCTTCTCGCTTGACAACTGTATCATCGTCCATGGCTTCTGGTGACGAAGGAGCTGTTTTC 246
||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 172 ACTTCTCGCTTGACAACTGTATCA---TCCATGGCTTCTAAAGACGAAGGAGCTGTTTTT 228
Query 247 AATTTGTCTGATTCTAGCCTTCTTAAGATCCTTAAAGGAGACATCACCAAGTGGTCTGTT 306
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 229 AATTTGTCAGATTCTAGCCTTCTTAAGATTCTTAAAGGAGACATCACCAAGTGGTCCGTT 288
Query 307 GATTCTTCCTCCGATGCTATTGTCAATCCAGCAAATGAGCGTATGTTAGGTGGTGGTGGT 366
||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 289 GATTCCTCCTCCGATGCTGTTGTCACTCCAGCAAATGAGCGTATGTTAGGTGGTGGTGGT 348
Query 367 GCTGATGGAGCAATACATAGAGCTGCTGGGCCACAACTCAGAGCTGCATGCTATGAGGTT 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 GCTGATGGAGCAATACATAGAGCTGCTGGGCCACAACTCAGAGCTGCATGCTATGAGGTT 408
Query 427 CCTGAAGTTCGTCCTGGAGTCCGTTGTCCAACTGGAGAAGCAAGAATTACTCCGGGTTTT 486
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 409 CCTGAAGTTCGTCCTGGAGTCCGTTGTCCAACCGGAGAAGCAAGAGTTACTCCGGGTTTT 468
Query 487 AACTTGCCTGCATCGCGTGTGATTCACACTGTTGGACCTATCTATGACTCAGATGTCAAC 546
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 469 AACTTGCCTGCATCGCGTGTGATTCACACTGTTGGACCGATCTATGACTCTGATGTCAAC 528
Query 547 CCTCAAGAATCTCTCACCAATTCGTACAAAAATAGTCTGAGAGTTGCAAAGGAAAACAAT 606
||||||||||| ||||| ||| | |||||||||||||||||||||||||||||||||||
Sbjct 529 CCTCAAGAATCCCTCACAAATGCTTACAAAAATAGTCTGAGAGTTGCAAAGGAAAACAAC 588
Query 607 ATCAAATACATTGCATTTCCTGCCATATCTTGTGGGATTTACGGATATCCTTTTGATGAA 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 ATCAAATACATTGCATTTCCTGCCATATCTTGTGGGATTTACGGATATCCTTTTGATGAA 648
Query 667 GCTGCTGCGATAGGTATTTCAACCATCAAACAATTCTCTACTGACTTTAAAGAGGTGCAT 726
||||||||||| ||||| |||||||||||||| ||||||| ||||||||||||||| |||
Sbjct 649 GCTGCTGCGATCGGTATATCAACCATCAAACAGTTCTCTAATGACTTTAAAGAGGTACAT 708
Query 727 TTTGTTTTGTTCGCGGACGACATATTCAGCGTATGGGTAAACAAAGCAAAGGAGGTGCTA 786
|||||||||||||| ||||| |||||||| || |||||||||||||||||||||||||||
Sbjct 709 TTTGTTTTGTTCGCTGACGATATATTCAGTGTGTGGGTAAACAAAGCAAAGGAGGTGCTA 768
Query 787 CAAAAAGCCTAA 798
||||||||||||
Sbjct 769 CAAAAAGCCTAA 780
> Ahg934868 jgi|Araly1|934868|scaffold_402856.1
Length=703
Score = 372 bits (201), Expect = 3e-102
Identities = 408/506 (81%), Gaps = 22/506 (4%)
Strand=Plus/Plus
Query 243 TTTCAATTTGTCTGATTCTAGCCTTCTTAAGATCCTTAAAGGAGACATCACCAAGTGGTC 302
|||||| |||||||||| | || | ||||||||| || |||| |||||||| || |||||
Sbjct 47 TTTCAAGTTGTCTGATTATTGCGTGCTTAAGATCGTTCAAGGCGACATCACAAATTGGTC 106
Query 303 TGTTGAT-TCTTCCTCCGATGCTATTGTCAATCCAGCAAATGAGCGTATGTTAGGTGGTG 361
|| ||| | ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 107 CGTCGATGGC-TCCTCCGATGCTATTGTTAATCCAGCAAATGAGCGTATGTTAGGTGGTA 165
Query 362 GTGGTGCTGATGGAGCAATACATAGA-GCTGCTGGGCCACAACTCAGAGCTGCATGCTAT 420
|||||| |||||||| || ||| || || ||||||||||| | ||||| ||||| ||
Sbjct 166 ATGGTGCAGATGGAGCCATTCAT-GACGCCGCTGGGCCACAGTTGAGAGCAGCATGTTAC 224
Query 421 GAGGTTCCTGAAGTTCGTCCTGGAGTCCGTTGTCCAACTGGAGAAGCAAGAATTACTCCG 480
|| || ||||||||| |||| |||||||||||||| || |||||| |||||||||| |||
Sbjct 225 GAAGTCCCTGAAGTTAGTCCCGGAGTCCGTTGTCCCACCGGAGAATCAAGAATTACGCCG 284
Query 481 GGTTTTAACTTGCCTGCATCGCGTGTGATTCACACTGTTGGACCTATCTATGACT-C--A 537
|||||||||||||||||||| | |||||||||||| |||||||| || ||| | | | |
Sbjct 285 GGTTTTAACTTGCCTGCATCTCATGTGATTCACACGGTTGGACCCATTTATAA-TGCCGA 343
Query 538 GATGTCAACCCTCAAGAATCTC-TCACCAATT-CGTACAAAAATAGTCTGAGAGTTGCAA 595
|| | || ||| ||||| ||| | | || | | ||||| || ||||||||||| || |
Sbjct 344 GAAG--AATCCT-AAGAAACTCCT-AGAAAGTGCTTACAAGAACAGTCTGAGAGTGGCTA 399
Query 596 AGGAAAACAATAT-CAAATACATTGCATTTCCTGCCATATCTTGTGGGATTTAC-GGATA 653
|||| || || || | ||||| |||||| |||| ||||||||||| |||| | || ||
Sbjct 400 AGGAGAATAACATTCGG-TACATAGCATTTACTGCGATATCTTGTGGTATTTTCAGG-TA 457
Query 654 TCCTTTTGATGAAGCTGCTGCGATAGGTATTTCAACCATCAAACAATTCTC-TACTGACT 712
|||||| || ||||||||| | |||| ||| || || | || ||||| | || || |
Sbjct 458 TCCTTTGGAGGAAGCTGCTTCTATAGCTATCTCCACTGTTAAGCAATT-TGGTAAAGA-T 515
Query 713 TT-AAAGAGGTGCATTTTGTTTTGTT 737
|| |||||||||||||||||| ||||
Sbjct 516 TTGAAAGAGGTGCATTTTGTTATGTT 541
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34882469055
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5