BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40610.1
Length=1105
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934869 jgi|Araly1|934869|scaffold_402857.1 1160 0.0
> Ahg934869 jgi|Araly1|934869|scaffold_402857.1
Length=821
Score = 1160 bits (628), Expect = 0.0
Identities = 702/738 (95%), Gaps = 4/738 (1%)
Strand=Plus/Plus
Query 136 ATTATTCCTCCAAGGAACTCATGGAGACGACGGAGGTTGGCAAGGTGGTCACGCCACGTT 195
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 85 ATTCTTCCTCCAAGGAACTCATGGAGACGACGGAGGTTGGCAAGGTGGTCACGCTACGTT 144
Query 196 TTACGGCGGCGAAGATGCTTCCGGCACCATGGGCGGAGCTTGTGGCTATGGAAATTTGTA 255
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 145 CTACGGCGGTGAAGATGCTTCTGGCACCATGGGCGGAGCTTGTGGCTATGGAAATTTGTA 204
Query 256 TGGCCAAGGTTACGGGACGAACACGGCGGCTTTAAGTACGGCTCTATTCAACAACGGACT 315
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 205 TGGCCAAGGTTACGGGACGAGCACGGCGGCTTTAAGTACGGCTTTATTCAACAACGGACT 264
Query 316 CACGTGTGGCGCGTGCTATGAGATGAAGTGTAACGATGACCCGAGGTGGTGTCTCGGGTC 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 265 CACGTGTGGCGCGTGCTATGAGATGAAGTGTAACGATGACCCGAGGTGGTGTCTCGGGTC 324
Query 376 AACCATCACCGTCACAGCTACAAACTTTTGCCCACCTAACCCTGGCCTCTCCAACGATAA 435
||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct 325 TACCATCACCGTCACAGCCACTAACTTTTGCCCACCAAACCCTGGCCTCTCCAACGATAA 384
Query 436 TGGAGGTTGGTGCAATCCTCCTCTTCAGCATTTCGACCTCGCCGAGCCAGCTTTTCTTCA 495
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||
Sbjct 385 TGGAGGTTGGTGCAATCCTCCTCTTCAACATTTCGACCTAGCCGAGCCAGCTTTTCTCCA 444
Query 496 GATCGCTCAGTATCGTGCCGGCATTGTTCCTGTCTCTTTCCGAAGAGTACCATGTATGAA 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GATCGCTCAGTATCGTGCCGGCATTGTTCCTGTCTCTTTCCGAAGAGTACCATGTATGAA 504
Query 556 GAAAGGAGGAATAAGGTTTACGATCAACGGACACTCATACTTCAACCTCGTTCTGATCTC 615
|||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||
Sbjct 505 GAAAGGAGGAATAAGGTTCACGATCAACGGACATTCATACTTCAACCTCGTCCTGATCTC 564
Query 616 CAACGTAGGAGGAGCAGGAGACGTACACGCCGTCTCAATCAAAGGCTCAAAAACACAGTC 675
|||||||||||||||||||| || ||||| ||||| |||||||||||||||||||||||
Sbjct 565 GAACGTAGGAGGAGCAGGAGATGTCCACGCTGTCTCGATCAAAGGCTCAAAAACACAGTC 624
Query 676 GTGGCAAGCGATGTCTAGAAACTGGGGACAAAACTGGCAGAGCAATTCATACATGAACGA 735
||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 625 GTGGCAAGCAATGTCTAGAAATTGGGGACAAAACTGGCAGAGCAATTCTTACATGAACGA 684
Query 736 CCAAAGCCTTTCCTTCCAGGTAACGACCAGCGATGGTCGCACACTCGTTAGCAACGACGT 795
||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct 685 CCAAAGCCTTTCCTTCCAGGTCACCACCAGCGATGGTCGCACACTCGTTAGCAATGACGT 744
Query 796 GGCTCCTTCTAATTGGCAGTTCGGACAAACCTACCAAGGTGGTCAGTTCTGATCCAAACC 855
|||||||||||||||||| |||||||||||||||||||| ||||| |||||||| | |||
Sbjct 745 GGCTCCTTCTAATTGGCAATTCGGACAAACCTACCAAGGCGGTCAATTCTGATC-AGACC 803
Query 856 ATCATC--C-ACATCTCT 870
|||||| | ||||||||
Sbjct 804 ATCATCATCCACATCTCT 821
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41172750360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5