BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40620.1
Length=1473
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483119 jgi|Araly1|483119|fgenesh2_kg.4__2179__AT2G40620.1 2255 0.0
> Ahg483119 jgi|Araly1|483119|fgenesh2_kg.4__2179__AT2G40620.1
Length=1469
Score = 2255 bits (1221), Expect = 0.0
Identities = 1395/1476 (95%), Gaps = 24/1476 (2%)
Strand=Plus/Plus
Query 14 tctctctctctctctctTTCGCTGTCCGATTCCGACAGATAGACAGAGGGCGCGAAACAG 73
|||| || |||||||||||||||||||||||||||||||||||||| ||| | || ||
Sbjct 1 TCTCCCTGTCTCTCTCTTTCGCTGTCCGATTCCGACAGATAGACAG-GGG-AAG-AAGAG 57
Query 74 AGAG-AAAATA-AGAAGAAG--A-AGGACGATCCAGATATGGAGGATCCTTCTAACCCAC 128
| | ||| | |||| ||| | |||||||||||||||||||||||||||||||||||
Sbjct 58 GGCGCGAAACAGAGAAAAAGATAGAGGACGATCCAGATATGGAGGATCCTTCTAACCCAA 117
Query 129 AACCAAACCAGAGCAATCTCTCGCAATGCCCGCCTTTAGCCACAGCTCCGACACCTGCGC 188
|| ||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||
Sbjct 118 AATCAAACCAGAGCAATCTCTCACAATGCCCGCCTTTAGCCACAGCTCCGACGCCGGCGC 177
Query 189 CAGTTCGTGGTCCGTACCACCGGAGAGCACATTCGGAGGTCCAATTCCGTCTCCCTGAAG 248
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 178 CATTTCGTGGTCCGTACCACCGGAGAGCACATTCGGAGGTTCAATTCCGTCTCCCTGAAG 237
Query 249 ATCTGGATCTCTCTGAACCATTCGGAGGATTCGATGAGCTTGGATCCGAAGATGATCTCT 308
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 238 ATCTGGATCTCTCTGAACCATTCGGAGGATTCGACGAGCTTGGATCCGAAGATGACCTCT 297
Query 309 TTTGCTCATACATGGACATTGAGAAACTTGGATCCGGATCCGGATCCGCATCCGATTCGG 368
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TTTGCTCATACATGGATATTGAGAAACTTGGATCCGGATCCGGATCCGCATCCGATTCGG 357
Query 369 CTGGTCCTTCTGCTCCTAGGTCTGATAACCCGTTTTCCGCTGAGAATGGAGGTGCGGAGG 428
||||||| |||||||||||||| |||||||||||||||||||| || ||||| |||||||
Sbjct 358 CTGGTCCATCTGCTCCTAGGTCCGATAACCCGTTTTCCGCTGACAACGGAGGCGCGGAGG 417
Query 429 CTGGGAATTCGAGACCTCGACACAGGCATAGCCTCTCCGTTGATGGCTCTTCGACTTTGG 488
|||| ||||| |||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 418 CTGGAAATTCAAGACCTAGACACAGGCACAGCCTCTCCGTTGATGGCTCTTCGACTTTGG 477
Query 489 AGTCAATTGAGGCTAAGAAAGCTATGGCTCCTGATAAGCTCGCTGAGCTTTGGGTCGTCG 548
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 478 AATCAATTGAGGCTAAGAAAGCTATGGCTCCTGATAAACTCGCTGAGCTTTGGGTCGTCG 537
Query 549 ACCCTAAAAGAGCTAAAAGGATAATTGCTAATCGACAGTCTGCTGCTCGTTCGAAAGAGA 608
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 ACCCTAAGAGAGCTAAAAGGATAATTGCTAATCGACAGTCTGCTGCTCGTTCGAAAGAGA 597
Query 609 GGAAGGCTCGGTATATCTTGGAGCTCGAGAGGAAAGTTCAGACCTTGCAAACTGAAGCTA 668
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 598 GGAAGGCTCGGTATATCTTGGAGCTAGAGAGGAAAGTCCAGACCTTGCAAACTGAAGCTA 657
Query 669 CTACCCTT-TCAGCACAGTTGTCTTTGTTCCAGAGAGACACAACTGGTTTGTCATCTGAG 727
||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 CTA-CCTTATCAGCACAATTGTCTTTGTTCCAGAGAGACACAACTGGTTTGTCATCTGAG 716
Query 728 AATACAGAGCTCAAGCTTCGTTTACAGGTCATGGAACAACAAGCTAAGTTGCGAGATGCA 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 AATACAGAGCTCAAGCTTCGTTTACAGGTCATGGAACAACAAGCTAAGTTGCGAGATGCA 776
Query 788 CTGAACGAGCAACTGAAAAAGGAAGTTGAGAGGCTGAAATTCGCCACGGGAGAAGTCTCA 847
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 777 CTGAACGAGCAACTGAAAAAGGAAGTTGAGAGGCTGAAATTTGCCACGGGAGAAGTCTCA 836
Query 848 CCCGCGGATGCTTATAACCTCGGAATGGCACACATGCAATATCAGCAACAACCACAACAA 907
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 837 CCCGCTGATGCTTATAACCTCGGAATGGCACACATGCAATATCAGCATCAACCACAACAA 896
Query 908 TCCTTCTTTCAACATCATCATCAGCAACAAACCGATGCTCAAAACCTGCAACAAATGACT 967
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 897 TCCTTCTTTCAACATCATCA---GCAACAAACAGATGCTCAAAACCTGCAACAAATGACT 953
Query 968 CATCAGTTTCATCTCTTCCAGCCTAACAACAACCAGAACC--AA-TC-T--TCTCGCACA 1021
||||||||||||||||||||||| ||||||||||| |||| || || | |||||| ||
Sbjct 954 CATCAGTTTCATCTCTTCCAGCCCAACAACAACCAAAACCCGAACTCATCCTCTCGCTCA 1013
Query 1022 AACCCTCCCACCGCTCATCAGCTTATGCATCACGCTACTTCTAATGCCCCGGCTCAATCT 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 AACCCTCCCACCGCTCATCAGCTTATGCATCACGCTACTTCTAATGCCCCGGCTCAATCT 1073
Query 1082 CATTCCTATTCAGAGGCAATGCATGAAGACCATCTTGGCCGGTTACAGGGGCTTGACATT 1141
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1074 CATTCCTATTCAGAGGCAATGCATGAAGACCCTCTTGGCCGGTTACAGGGGCTTGACATT 1133
Query 1142 AGCAGCTGTGGCAGAGGCTCAAACTTTGGTAGGTCTGACACCGTCAGTGAAAGCAGCAGC 1201
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1134 AGCAGCTGTGGCAGAGGCTCAAACTTTGGTAGGTCTGACACCGTCAGTGAAAGTAGCAGC 1193
Query 1202 ACTATGTGAGGCTGCCTTTCCCAGATTCCCCTTTGTCGATAAACCTATTCTTTCGCCCTC 1261
|| |||||||||||| ||||||||||||| ||||||||||||||||||||||| || |||
Sbjct 1194 ACCATGTGAGGCTGCATTTCCCAGATTCCGCTTTGTCGATAAACCTATTCTTTTGCTCTC 1253
Query 1262 CCTTGAAATCTTTAGCTAAAAAG-TAACATCTTCGTGACAGTCGGATTCATTTTTTATTC 1320
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 1254 CCTTGAAATCTTTAGCTAAAAAGGTAACATCTTCGTGACAGTCTGATTCATTTTTTATTC 1313
Query 1321 TGTAAAACTGGTTT-TTTG-GGGGGTTTTGGGGTTTCAACTTTAGAGACCACAGTTGTTT 1378
|||||||||||||| ||| ||||||||||||||||||||| |||||||||||| |||||
Sbjct 1314 TGTAAAACTGGTTTCTTTTTGGGGGTTTTGGGGTTTCAACTATAGAGACCACAGGTGTTT 1373
Query 1379 TAACTTGTCTGATTTCTCA-TTTCCTGATTCATCTTGTTCTCCT-GGGGAGCTACTGAAT 1436
|||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||
Sbjct 1374 TAACTTGTCTGATTTCTCTGTTTCCTGATTCATCTTGTTCTTCGAGGGGAGCTACTGAAG 1433
Query 1437 TATAAACAGATCATATTTCTGTTTCTTTATGTTGTC 1472
||||||||||||||||||||||||||||||||||||
Sbjct 1434 TATAAACAGATCATATTTCTGTTTCTTTATGTTGTC 1469
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55116584515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5