BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40630.1
Length=2106
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483120 jgi|Araly1|483120|fgenesh2_kg.4__2180__AT2G40630.1 2579 0.0
> Ahg483120 jgi|Araly1|483120|fgenesh2_kg.4__2180__AT2G40630.1
Length=1971
Score = 2579 bits (1396), Expect = 0.0
Identities = 1737/1892 (92%), Gaps = 61/1892 (3%)
Strand=Plus/Plus
Query 250 ATTCGACATCTGGGTTTTTGGAAAAGAGAGATCTTTCTGGTGTGTAAATGGAGGAACAGA 309
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 106 ATTCGACATCTGGG-TTTTGGAAAAGAGAGATCTTTCTGGTGTGTAAATGGAGGAACAGA 164
Query 310 GAGGAATTTCCTCTG-GTGTTGTGTCGGAACCTGCATCGAATTCTGTGATTTCTGGCGAG 368
||||||||||||||| | |||||||||||||||||||||| ||||| |||||||||||||
Sbjct 165 GAGGAATTTCCTCTGCG-GTTGTGTCGGAACCTGCATCGAGTTCTGGGATTTCTGGCGAG 223
Query 369 AAGCGTAACGGAAATGGATTAGAT-GAGAAAGATGAATTAGGGTCTAAACGTGTGAAAGT 427
|||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 224 AAGCGTAACGGATATGGATTAG-TAGAGAAAGATGAATTAGGGTCTAAACGTGTGAAAGT 282
Query 428 CCCAGATCTGGCTTCTGATGCGAAAACCAGTAGTTTGCAATCTCATGGAAACAGTAATAG 487
||||||||| |||||||||||||||| ||||| | |||||||||||||||||||||| ||
Sbjct 283 CCCAGATCTAGCTTCTGATGCGAAAAACAGTAATCTGCAATCTCATGGAAACAGTAAAAG 342
Query 488 TGTTCAGCAACCAAATCTTAGTAGTGAGAAGTTGTCGAAAGTATCT-AAAGTGCTTGTGG 546
||||||||||||||||||||||||||| |||||||||||| ||||| ||| |||||||||
Sbjct 343 TGTTCAGCAACCAAATCTTAGTAGTGAAAAGTTGTCGAAATTATCTGAAA-TGCTTGTGG 401
Query 547 CTCCTGATGCTGAAGGTAT-AAGAAGAGTAGTTAGAGAAAATGATGTTTT-GTCTAAAGA 604
||||||||||||||||| | | |||||||||||||||| || |||||||| | |||| ||
Sbjct 402 CTCCTGATGCTGAAGGT-TCAGGAAGAGTAGTTAGAGACAAGGATGTTTTAG-CTAAGGA 459
Query 605 TATAAAACCTTCCTCAACTGTTGAGACGAGAACATACTTGCCTAAGGCCAAGTCAATTTC 664
||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||
Sbjct 460 TATAAAACCTTCCACAGTTGTTGAGACGAGAACATACTTGCCTAAGGCCAAGTCTATTTC 519
Query 665 TACAGATGATAATAGACGCGTTGTTAATTCTGGAAAACAGGCTTTGCTTGAGAATCATAC 724
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 TACAGATGATAATAGATGCGTTGTTAATTCTGGAAAACAGGCTTTGCTTGAGAATCATAC 579
Query 725 TGTAAAAACA-GATGA-TAGTAA--GT--GT-----------C--G-TG-T--TG-TT-- 758
|||||||| | ||| | |||||| || || | | || | | ||
Sbjct 580 TGTAAAAA-ATGAT-AGTAGTAACTGTGAGTCACGACCAGGACAGGTTGATGGCGTTTCA 637
Query 759 AAGAATATTAGCCTCTTGAAACCGAGGGAGACTACTGAATCTGTTGTAAGTCAACGTGGA 818
||||||| |||||||||||||||||| ||||||||||||||||||| ||||| |||||||
Sbjct 638 AAGAATAGTAGCCTCTTGAAACCGAGAGAGACTACTGAATCTGTTGGAAGTCCACGTGGA 697
Query 819 GCAGCAGAGCCTTCGGTTTCAGTTCCTGTTGGCGATAAAGTAAGTCCTTTTCAGATGTGT 878
|||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||
Sbjct 698 GCAGCAGAGCCTTCGGTTTCAGTTTCTGTTGGCGAAAAAGTTGGTCCTTTTCAGATGTGT 757
Query 879 AGTAGTGCAGATGGCTCATTAGGTGAGTCAGATTCGATGCGGCGATGGAGGGAAATGAAG 938
||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 758 AGTAGTGCAGAGGGCTCATTGGGTGAGTCAGATTCCATGCGGCGATGGAGGGAAATGAAG 817
Query 939 CGGAATGGTTTTCTATCAGGCCCTTTGGGTGGAGTTGCAGCACCAA-CTTCTACAGTAGT 997
|||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||
Sbjct 818 CGGAATGGTTTTCTATCAGGCCCTTTGGGTGGAGTTGCAGCACCTAGCT-CTACAGTAGT 876
Query 998 GACTACGCCTGTTGAAGTACCTGCGCCAAAGCAACAGAAGAATAAGCGGAGAGGTGGTGA 1057
|| ||||||||||||||||||||||| ||||||||| ||||||||||||||| ||| |
Sbjct 877 GAGTACGCCTGTTGAAGTACCTGCGCAAAAGCAACAAAAGAATAAGCGGAGAAGTGAT-- 934
Query 1058 GTCTCTCAAGAAGAAAAACGATGTCCCTAAGAAGGAACAACAGCTGGTAGATAGGTTCGC 1117
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 935 -TCTCTCAAGAAGAGAAACGATGTCCCTAGGAAGGAACAACAGCTGGTAGATAGGTTTGC 993
Query 1118 CAATGTTACTGCTCCAAGTGGATTGCTGACGGAATTGAACCCGGGAATCATTAACCATGT 1177
||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 994 AAATGTTACTGCGCCAAGTGGATTGCTGACGGAATTAAACCCTGGAATCATTAACCATGT 1053
Query 1178 CAGGACTAAGAAACAGGTCTGCTCAATTATTGAAGCTTTGATTCGAAGTAG-TAATGATG 1236
||| |||||||||||||||||||||||||| |||||||||||||||||| | |||||||
Sbjct 1054 CAGAACTAAGAAACAGGTCTGCTCAATTATCGAAGCTTTGATTCGAAGT-GCTAATGATA 1112
Query 1237 ATGCTACCACGAGGGAAAGACATGGCGATTTCAATGTAAGAGACGCAATCAGAGAAGATA 1296
|||||||| | ||||||||| | |||||| |||||||||||| |||||||||||||||
Sbjct 1113 ATGCTACCGTGGGGGAAAGACGTACCGATTTGAATGTAAGAGACTCAATCAGAGAAGATA 1172
Query 1297 GAGCATTAGCCTTTAAGTTACCATCCACCGGGGTGTCTGATAATGCCATTTCCATTACAA 1356
| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1173 GGGCATTAGCCTTTAAGTTGCCATCCACCGGGGTACCTGATAATGCCATTTCCATTACAA 1232
Query 1357 ATCCTGAACAAGCCACATCTCTTGCTGTTGAAGCTGCTACCGTAGCTTCCCAATGGTTGG 1416
|||| ||| |||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 1233 ATCCGGAAAAAGCCACATCTCTTGCTGTTGAAGCTGCTACCGTAGCTTCTCAATGGCTGG 1292
Query 1417 AGTTTCTTCAACAAGACCTCAGCGGACGACTTTCAGCTGTGCAGGATAGTAGGAATAGAG 1476
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1293 AATTTCTTCAACAAGACCTCAGCGGACGACTTTCAGCTGTGCAGGATAGTAGGAATAGAG 1352
Query 1477 TTCAAAATATTTTGACTACTGAGTTACCGCTTCTCGCTTCATCAAGGGAATCTTCTTCTA 1536
||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||
Sbjct 1353 TTCAAAATATTTTGACTACCGAGTTACCGCTTCTCGTTTCATCAAGAGAATCTTCTTCTA 1412
Query 1537 ACCAAGCAAATTCTCTTGAGATGGTGACTACGAATACCTCTGGTGATGCTTCGTCCGATA 1596
||| ||||||| |||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 1413 ACCTAGCAAATACTCTTGAGATGGCGACTTTGAATACCTCTGGTGATGCTTCGTCCGATA 1472
Query 1597 AAGCAGCAACCGAGACACATCAGAAGAGG-TGGACTGCAAAATTTGATCAGATAAATAAA 1655
|||||||||| ||||| |||||||| ||| ||| ||||||||||||||||||||||||||
Sbjct 1473 AAGCAGCAACAGAGACGCATCAGAA-AGGGTGGTCTGCAAAATTTGATCAGATAAATAAA 1531
Query 1656 GCTCTGTATGATGAACAGAGAGATTTGGAACGTTCGCTAAACCAAGTGAAGGAAATGCAG 1715
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1532 GCTCTTTATGATGAACAGAGAGATTTGGAACGTTCGCTAAACCAAGTGAAGGAAATGCAG 1591
Query 1716 TCACGATGTAACCATGGTCTACGACAAATGGAAGAGTACTCGCCTTTTAGTTCCCAATCA 1775
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1592 TCACGATGTAACGAGGGTCTACGACAAATGGAAGAGTACTCGCCTTTTAGTTCCCAATCA 1651
Query 1776 TCCGATTCAAGTTTTGGGAAAGACGGTAATCAGGAGACTAGTATGGCGGTTCAGGCGGCT 1835
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1652 TCTGATTCAAGTTTTGGGAAAGACAGTAATCAGGAGACTAGTATGGCGGTTCAGGCGGCT 1711
Query 1836 GCAGCTTCTATTTTTTCAACCTGCAGTTTTCTTCTGTCAATGATGAAGCCGCCGCCTACC 1895
|||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 1712 GCAGCTTCCATTTTTTCGACCTGCGGTTTTCTTCTGTCAATGATGAAGCCGCCGCCTACC 1771
Query 1896 GGTTCTTAATCTTGttttttttttttttttGGTTAACCGAATTTCTGACTAATCACACCG 1955
|||||||||||||||| ||||| |||| ||||| ||| |||||||||||||||
Sbjct 1772 GGTTCTTAATCTTGTTATTTTT--------GGTTTACCGAGTTTGTGACTAATCACACCG 1823
Query 1956 CCTATATGTTGTCTTTATGTTAGCACTTTTTTGATGGTTATTATCTTTAGTGTAAATAAC 2015
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 1824 CCTATATGTTGTCTTTATGTTAGCACTTTT--GATGTTTATTATCTTTAGTGTAAATAAC 1881
Query 2016 AGGCGATTGATCAGTTTGTCATTCGTGTATGTAACATTAGAAGCGACCttttttctttt- 2074
||||||||||| ||||||| || |||||||||||||||||||||||||||||| || |
Sbjct 1882 AGGCGATTGATGGGTTTGTCCTT-GTGTATGTAACATTAGAAGCGACCTTTTTT-TTATA 1939
Query 2075 tATATCAAAGCTACAAAGTTGGCATTTGTTTC 2106
|||||||| ||||||||||||||||||| |||
Sbjct 1940 TATATCAATGCTACAAAGTTGGCATTTGCTTC 1971
Score = 150 bits (81), Expect = 3e-35
Identities = 99/107 (93%), Gaps = 4/107 (4%)
Strand=Plus/Plus
Query 38 TCACCATTTGAATTCAAAATCCCTTTTCT-CTTCTGTCTCTCATCGATTTATCCCCAAAT 96
||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||
Sbjct 1 TCACCATTTGAATTCAAAATCCCTTTTTTTCTTCCGTCTCTCATCGATTTATCCCCAAAA 60
Query 97 A--T-ACTTTCTTCTTCGTCCTCACCTCACTCCTCTACACAATTTAT 140
| | |||| |||||||||||||||||||||||||||||||||||||
Sbjct 61 AAATCACTTCCTTCTTCGTCCTCACCTCACTCCTCTACACAATTTAT 107
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79227709600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5