BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40640.1
Length=1342
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483121 jgi|Araly1|483121|fgenesh2_kg.4__2181__AT2G40640.1 1940 0.0
> Ahg483121 jgi|Araly1|483121|fgenesh2_kg.4__2181__AT2G40640.1
Length=1344
Score = 1940 bits (1050), Expect = 0.0
Identities = 1252/1346 (93%), Gaps = 28/1346 (2%)
Strand=Plus/Plus
Query 1 GCTACTCATGTCCCACTTACGACGACGTCGTTTT-AAACTCTCTCTCTGTGCTCTTCCAG 59
||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||
Sbjct 1 GCTGCTCATGTCCCACTTACGACGACGTCGTTTTGAAACTCTCTCTGTGTGCTCTTTCAG 60
Query 60 --T-CTCTATCGATCGCCTTCTGAATTTTCCGGCGGAAAAGCAAATGTCCGTTAACGACA 116
| |||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||
Sbjct 61 CTTCCTCTATCGATCGCCTTGTGAATTTTCCGGCGGAAAAGCAAATGTCTGTTAATGACA 120
Query 117 GTATCGATCCTCGGTTCGTATTCCACGTTGAAGATGAATCTTTGCGTTTCCGTGTGGGAG 176
||||||||||||||||| |||||||||| |||||||||||| ||||||||||||| ||||
Sbjct 121 GTATCGATCCTCGGTTCCTATTCCACGTAGAAGATGAATCTCTGCGTTTCCGTGTTGGAG 180
Query 177 ATTCAGGTACTAAGATCCGGGAGCTCGAAACCGTCGGCGATCGCC--------ATTTC-A 227
|||| |||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 181 ATTCCGGTACTAAGAGCCGGGAGCTCGAAACCGTCGGCGATCGCCGTTTTAGAATTTCTG 240
Query 228 GAACCCAGCAAGGTTTCTGCGGAAATAGAATTGAGAAAGATGAAACCATGTATTCCGATG 287
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 GAATCCAGCAAGGTTTCTGCGGAAATAGACTTGAGAAAGATGAAACCATGTATTCCGATG 300
Query 288 GAGATGATGAAGAGTACGACGTTTCTATCCGAAGACGAACTGCTCTGATTCAGCCTGGTA 347
|||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 301 GAGATGATGACGAGGACGACGTTTCTATCCGAAGAAGAACTGCTCTGATTCAGCCTGGTA 360
Query 348 TTGATTCCGGTAACAATTATGATTCT---GCTGCAGCTGAAGAAACCAACAGAGAAAGTA 404
|||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||
Sbjct 361 TTGATTCCGGTAACAACTATGATTCTGCAGCTGAAGCTGAAGAAACCAACAGAGAAAGTA 420
Query 405 AAAATCCAGTTGGTTGGGAACTGGTTGTGAGAGAAGATG--G-GGAAGGTAATTCAACGA 461
|||||||||||||||||||| |||||||||||||||||| | |||||| || ||| |||
Sbjct 421 AAAATCCAGTTGGTTGGGAAATGGTTGTGAGAGAAGATGATGAGGAAGGGAAATCATCGA 480
Query 462 TTGATCGACATGAAATGGAGTTTAAGGTGAGGATCACTAAACCAGATGGTAACGTATCTA 521
||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 481 TTGATCGCCATGAAATGGAGTTTAAGGTGATGATCACTAACCCAGATGGTAACGTATCTA 540
Query 522 ATTCCCACCGTAACACGCAACAAAAGCGAGATTTTGCTTCTGTGGAGAAGGAGAGAGTCA 581
|||||| || ||||| || | ||||||||||||||||||||||||||| |||| |||||
Sbjct 541 ATTCCCGCCATAACATTCAGCCAAAGCGAGATTTTGCTTCTGTGGAGAAAGAGAAAGTCA 600
Query 582 CTACTACTAGTGTCAGCTCTTGGGAGTCTCTCAAGGCCATCCTCTCTGATCCTGTCACCG 641
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CTACTTCTAGTGTCAGCTCTTGGGAGTCTCTCAAGGCCATCCTCTCTGATCCTGTCACCG 660
Query 642 GAGCCTTGATGAATGATGCTACCATACTGCCTTGTGGACATTCTTTTGGCGCCGGGGGAT 701
|||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 661 GAGCCTTGATGATTGATGCTACAATACTGCCTTGTGGACATTCTTTTGGTGCCGGGGGAT 720
Query 702 TAAAAGAAGTTaaaaaaaTGAAAGCATGTTTCACATGTTCCCAACCTACTTTAGAAGGAT 761
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TAATACAAGTTAAAAAAATGAAAGCATGTTTCACATGTTCCCAACCTACTTTAGAAGGAT 780
Query 762 CAGAAAAGCCAAATCTCTCTCTCAGAATTGTAGTTCATGCTTTCCGCCAAGAAGAAGATT 821
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 781 CAGAAAAGCCAAATCTCTCTCTCAGAATTGTAGTTCATGCTTTCCGCCAAGAAGAAGAAT 840
Query 822 CAGATCATATTCACACGCTGAAAAGAAGGAAAGAAAGGTCGGATCAGAAGAGAAGTTTCT 881
| |||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||
Sbjct 841 CTGATCATATTCACACGCTGAAGCGAAAGAAAGAAAGGTTGGATCAGAAGAGAAGTTTCT 900
Query 882 GTATCCCAAACATCACTGAAACTCCTAAGAGTAGCCGAGGCATACAGTTTCCTTTCTCCA 941
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 901 GTATCCCAAACATCACTGAAACTCCAAAGAGTAGCCGAGGCATACAGTTTCCTTTCTCCA 960
Query 942 TTGGAGATCATATTATCATAGAGGGAAACAAAAGGACGCCTCCAAGGTTTGTCGGACGCA 1001
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 961 TTGGAGATCATATTATCATAGAGGGAAACAAAAGGACGCCTCCACGGTTTGTCGGACGCA 1020
Query 1002 TAG-CTGTTATAATGACACAATGCTTAAATGGATGGTACGTTGTGAAGACAGTGGACAAT 1060
|| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1021 -AGGCTGTTATAATGACACAGTGCTTAAATGGATGGTACGTTGTGAAGACAGTGGACAAT 1079
Query 1061 TCAGAGTCTATCAAGTTACAACATTGCTCACTTGCCAAGATTTCAGACAATTCATCTACG 1120
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1080 GCAGAGTCTATTAAGTTACAACATTGCTCACTTGCCAAGATTTCAGACAATTCATCTGCT 1139
Query 1121 AAGGTAACAGTAGCTGAAATGCCACCGTCTTGGCTCTAACTCGTAGAAAGCAAATATC-T 1179
||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| | |
Sbjct 1140 AAGGTAACAGTAGCTGAAATGGCACCGTCTTGGCTCTAACTCGTCGAAAGCAAATA-CAT 1198
Query 1180 GTGGCTGCAGAAATCAG---CATCTGTAATTTTTTCATTCAG-AGAAAGTAGTTACTACG 1235
||||||||||||||||| ||||||||||||||| ||||| ||||| ||| |||||||
Sbjct 1199 GTGGCTGCAGAAATCAGAAGCATCTGTAATTTTTTGGTTCAGGAGAAATTAGATACTACG 1258
Query 1236 TTTCATTATGTAATATAGGAACGAGACAACAATTTTCTGTACTAAATCCAGTGTTTTC-A 1294
||| |||||||| |||||||||||||||| |||| |||||| ||||||||||||||| |
Sbjct 1259 TTTGATTATGTAGTATAGGAACGAGACAAGAATTCTCTGTATTAAATCCAGTGTTTTTTA 1318
Query 1295 TTCATACAAGGAAACTTTGCTCATCT 1320
||||||||||||||||||||||||||
Sbjct 1319 TTCATACAAGGAAACTTTGCTCATCT 1344
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50207881689
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5