BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G40640.1 Length=1342 Score E Sequences producing significant alignments: (Bits) Value Ahg483121 jgi|Araly1|483121|fgenesh2_kg.4__2181__AT2G40640.1 1940 0.0 > Ahg483121 jgi|Araly1|483121|fgenesh2_kg.4__2181__AT2G40640.1 Length=1344 Score = 1940 bits (1050), Expect = 0.0 Identities = 1252/1346 (93%), Gaps = 28/1346 (2%) Strand=Plus/Plus Query 1 GCTACTCATGTCCCACTTACGACGACGTCGTTTT-AAACTCTCTCTCTGTGCTCTTCCAG 59 ||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||| Sbjct 1 GCTGCTCATGTCCCACTTACGACGACGTCGTTTTGAAACTCTCTCTGTGTGCTCTTTCAG 60 Query 60 --T-CTCTATCGATCGCCTTCTGAATTTTCCGGCGGAAAAGCAAATGTCCGTTAACGACA 116 | |||||||||||||||| |||||||||||||||||||||||||||| ||||| |||| Sbjct 61 CTTCCTCTATCGATCGCCTTGTGAATTTTCCGGCGGAAAAGCAAATGTCTGTTAATGACA 120 Query 117 GTATCGATCCTCGGTTCGTATTCCACGTTGAAGATGAATCTTTGCGTTTCCGTGTGGGAG 176 ||||||||||||||||| |||||||||| |||||||||||| ||||||||||||| |||| Sbjct 121 GTATCGATCCTCGGTTCCTATTCCACGTAGAAGATGAATCTCTGCGTTTCCGTGTTGGAG 180 Query 177 ATTCAGGTACTAAGATCCGGGAGCTCGAAACCGTCGGCGATCGCC--------ATTTC-A 227 |||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 181 ATTCCGGTACTAAGAGCCGGGAGCTCGAAACCGTCGGCGATCGCCGTTTTAGAATTTCTG 240 Query 228 GAACCCAGCAAGGTTTCTGCGGAAATAGAATTGAGAAAGATGAAACCATGTATTCCGATG 287 ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 241 GAATCCAGCAAGGTTTCTGCGGAAATAGACTTGAGAAAGATGAAACCATGTATTCCGATG 300 Query 288 GAGATGATGAAGAGTACGACGTTTCTATCCGAAGACGAACTGCTCTGATTCAGCCTGGTA 347 |||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct 301 GAGATGATGACGAGGACGACGTTTCTATCCGAAGAAGAACTGCTCTGATTCAGCCTGGTA 360 Query 348 TTGATTCCGGTAACAATTATGATTCT---GCTGCAGCTGAAGAAACCAACAGAGAAAGTA 404 |||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||| Sbjct 361 TTGATTCCGGTAACAACTATGATTCTGCAGCTGAAGCTGAAGAAACCAACAGAGAAAGTA 420 Query 405 AAAATCCAGTTGGTTGGGAACTGGTTGTGAGAGAAGATG--G-GGAAGGTAATTCAACGA 461 |||||||||||||||||||| |||||||||||||||||| | |||||| || ||| ||| Sbjct 421 AAAATCCAGTTGGTTGGGAAATGGTTGTGAGAGAAGATGATGAGGAAGGGAAATCATCGA 480 Query 462 TTGATCGACATGAAATGGAGTTTAAGGTGAGGATCACTAAACCAGATGGTAACGTATCTA 521 ||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||| Sbjct 481 TTGATCGCCATGAAATGGAGTTTAAGGTGATGATCACTAACCCAGATGGTAACGTATCTA 540 Query 522 ATTCCCACCGTAACACGCAACAAAAGCGAGATTTTGCTTCTGTGGAGAAGGAGAGAGTCA 581 |||||| || ||||| || | ||||||||||||||||||||||||||| |||| ||||| Sbjct 541 ATTCCCGCCATAACATTCAGCCAAAGCGAGATTTTGCTTCTGTGGAGAAAGAGAAAGTCA 600 Query 582 CTACTACTAGTGTCAGCTCTTGGGAGTCTCTCAAGGCCATCCTCTCTGATCCTGTCACCG 641 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 CTACTTCTAGTGTCAGCTCTTGGGAGTCTCTCAAGGCCATCCTCTCTGATCCTGTCACCG 660 Query 642 GAGCCTTGATGAATGATGCTACCATACTGCCTTGTGGACATTCTTTTGGCGCCGGGGGAT 701 |||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||| Sbjct 661 GAGCCTTGATGATTGATGCTACAATACTGCCTTGTGGACATTCTTTTGGTGCCGGGGGAT 720 Query 702 TAAAAGAAGTTaaaaaaaTGAAAGCATGTTTCACATGTTCCCAACCTACTTTAGAAGGAT 761 ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 TAATACAAGTTAAAAAAATGAAAGCATGTTTCACATGTTCCCAACCTACTTTAGAAGGAT 780 Query 762 CAGAAAAGCCAAATCTCTCTCTCAGAATTGTAGTTCATGCTTTCCGCCAAGAAGAAGATT 821 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 781 CAGAAAAGCCAAATCTCTCTCTCAGAATTGTAGTTCATGCTTTCCGCCAAGAAGAAGAAT 840 Query 822 CAGATCATATTCACACGCTGAAAAGAAGGAAAGAAAGGTCGGATCAGAAGAGAAGTTTCT 881 | |||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| Sbjct 841 CTGATCATATTCACACGCTGAAGCGAAAGAAAGAAAGGTTGGATCAGAAGAGAAGTTTCT 900 Query 882 GTATCCCAAACATCACTGAAACTCCTAAGAGTAGCCGAGGCATACAGTTTCCTTTCTCCA 941 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 901 GTATCCCAAACATCACTGAAACTCCAAAGAGTAGCCGAGGCATACAGTTTCCTTTCTCCA 960 Query 942 TTGGAGATCATATTATCATAGAGGGAAACAAAAGGACGCCTCCAAGGTTTGTCGGACGCA 1001 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 961 TTGGAGATCATATTATCATAGAGGGAAACAAAAGGACGCCTCCACGGTTTGTCGGACGCA 1020 Query 1002 TAG-CTGTTATAATGACACAATGCTTAAATGGATGGTACGTTGTGAAGACAGTGGACAAT 1060 || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1021 -AGGCTGTTATAATGACACAGTGCTTAAATGGATGGTACGTTGTGAAGACAGTGGACAAT 1079 Query 1061 TCAGAGTCTATCAAGTTACAACATTGCTCACTTGCCAAGATTTCAGACAATTCATCTACG 1120 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1080 GCAGAGTCTATTAAGTTACAACATTGCTCACTTGCCAAGATTTCAGACAATTCATCTGCT 1139 Query 1121 AAGGTAACAGTAGCTGAAATGCCACCGTCTTGGCTCTAACTCGTAGAAAGCAAATATC-T 1179 ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| | | Sbjct 1140 AAGGTAACAGTAGCTGAAATGGCACCGTCTTGGCTCTAACTCGTCGAAAGCAAATA-CAT 1198 Query 1180 GTGGCTGCAGAAATCAG---CATCTGTAATTTTTTCATTCAG-AGAAAGTAGTTACTACG 1235 ||||||||||||||||| ||||||||||||||| ||||| ||||| ||| ||||||| Sbjct 1199 GTGGCTGCAGAAATCAGAAGCATCTGTAATTTTTTGGTTCAGGAGAAATTAGATACTACG 1258 Query 1236 TTTCATTATGTAATATAGGAACGAGACAACAATTTTCTGTACTAAATCCAGTGTTTTC-A 1294 ||| |||||||| |||||||||||||||| |||| |||||| ||||||||||||||| | Sbjct 1259 TTTGATTATGTAGTATAGGAACGAGACAAGAATTCTCTGTATTAAATCCAGTGTTTTTTA 1318 Query 1295 TTCATACAAGGAAACTTTGCTCATCT 1320 |||||||||||||||||||||||||| Sbjct 1319 TTCATACAAGGAAACTTTGCTCATCT 1344 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50207881689 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5