BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40650.1
Length=1493
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483124 jgi|Araly1|483124|fgenesh2_kg.4__2184__AT2G40650.1 1836 0.0
> Ahg483124 jgi|Araly1|483124|fgenesh2_kg.4__2184__AT2G40650.1
Length=1363
Score = 1836 bits (994), Expect = 0.0
Identities = 1272/1400 (91%), Gaps = 44/1400 (3%)
Strand=Plus/Plus
Query 5 TCTTCAAAGACCTAGAGTGTCTTCGTCTTCGACGACGGCAAATTCGTGGAAGCTGTTTCA 64
||||||||| ||||||||||||||||| || |||||||||||||||||||||| ||||||
Sbjct 1 TCTTCAAAGCCCTAGAGTGTCTTCGTC-TCTACGACGGCAAATTCGTGGAAGCGGTTTCA 59
Query 65 TCGATTCCGGCTTCACTGAAGCGGCGTCGCTCGACGTTTATTATTCCGACGACTAGGCCT 124
| | | ||| | | ||| || | || |||| || ||||||||||||||||||||
Sbjct 60 ---A---C-GATTC-C-G--GCGTCG-C-CT-GACGCTTGTTATTCCGACGACTAGGCCT 105
Query 125 TTGAGGCAGTTTCTGATTAACTTCAGGCGATAATGGCAAACAGAACAGATCCGTTGG-CA 183
| ||||| || ||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 106 TCGAGGCGGTGTCTGATTAACTTCCGGCGATAATGGCAAACAGAACAGATCCGTTGGCCA 165
Query 184 AAGAATATAAGAGGAACGAATCCGCAGAATCTGGTAGAGAAGATTGTGCGAACGAAGATT 243
|| ||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 166 AA-AATATCAGAGGTACGAATCCGCAGAATCTGGTAGAGAAGATTGTGAGAACGAAGATT 224
Query 244 TATCAGCACACCTTTTGGAAGGAGCAGTGCTTTGGTCTCACGGCGGAGACATTGGTGGAC 303
|| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 225 TACCAGCACACCTTTTGGAAGGAGCAGTGCTTTGGTCTTACGGCGGAGACGTTGGTTGAC 284
Query 304 AAAGCTATGGAGCTCGACCATCTAGGTGGTACCTTTGGTGGTAGCCGCAAGCCTACTCCG 363
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 285 AAAGCTATGGAGCTCGACCATCTTGGTGGTACCTTTGGTGGTAGCCGCAAGCCTACTCCG 344
Query 364 TTCCTTTGCCTCATATTGAAGATGCTTCAAATCCAGCCTGAGAAGGAAATTGTCGTGGAG 423
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 345 TTCCTTTGCCTCATATTGAAGATGCTACAAATCCAGCCTGAGAAAGAAATTGTCGTGGAG 404
Query 424 TTCATAAAAAATGATGACTACAAATATGTTCGTATTCTTGGTGCGTTCTATCTGCGTCTC 483
||||||||||| ||||| |||||||||||||||||||| ||||| |||||||| ||||||
Sbjct 405 TTCATAAAAAACGATGATTACAAATATGTTCGTATTCTCGGTGCTTTCTATCTCCGTCTC 464
Query 484 ACTGGGACTGATGTTGATGTCTATCGCTACCTCGAACCTCTCTACAATGACTACCGGAAA 543
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 465 ACTGGGACTGATGTTGATGTCTATCGCTACCTCGAACCTCTTTACAATGACTACCGGAAA 524
Query 544 GTGAGACAAAAGTTATCTGATGGGAAGTTTTCGCTGACACATGTGGACGAAGTCATTGAG 603
||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 525 GTGAGACAAAAGTTAGCTGATGGGAGGTTTTCGTTGACACATGTGGACGAAGTCATTGAG 584
Query 604 GAACTTCTAACCAAGGATTATTCTTGTGATATTGCAATGCCACGTTTGAAGAAAAGGTGG 663
|||||| ||||||||||||||||||| ||||||||||||||||| |||||||| ||||||
Sbjct 585 GAACTTTTAACCAAGGATTATTCTTGCGATATTGCAATGCCACGCTTGAAGAAGAGGTGG 644
Query 664 ACGCTTGAACAGAATGGT-TTATTAGAGCCAAGGAAAAGTGTTTTGGAAGACGACTTTGA 722
|||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct 645 ACGCTTGAACAGAATGGTCTT-TTAGAGCCAAGGAAAAGCGTTTTGGAAGACGACTTTGA 703
Query 723 AGAAGAGGAAGAAAAGGAGGAGAATGAAGGGATTGCTGATGGATCTGAAGATGAGATGGA 782
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 704 AGAAGAAGAAGAAAAGGAGGAGAATGAAGGGATTGCAGATGGATCTGAAGATGAGAAGGA 763
Query 783 TCAGCGCCGTAAGAGTCCTGAAAGAGAAAGAGAAAGAGACAGAGACAGGAGACGCGACAG 842
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 TCATCAACGTAAGAGTCCTGAAAGAGAAAGAGAAAGAGACAGAGACAGGAGACGCGACAG 823
Query 843 TCATAGACACAGGGATCGTGATTATGACAGAGACTATGATATGGATCGAGATCATGACAG 902
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 824 TCATAGACACAGGGATCGTGATTATGACAGAGACTATGATATGGATCGAGATTATGACAG 883
Query 903 AGACTATGAAAGAGAACGTGGGCATGGTCGAGACCGGGATAgggagagagacagggatca 962
||||||||||||||||||||||| ||| ||||||||||||||||| |||||||| |||||
Sbjct 884 AGACTATGAAAGAGAACGTGGGCGTGGACGAGACCGGGATAGGGATAGAGACAGAGATCA 943
Query 963 ctatagagagcgagatagggacagggaaagaggcagagatagagaacgagacagaagaga 1022
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 944 CTATAGAGAGCGAGATAGGGACAGGGAACGAGGCAGAGATAGAGAACGAGACAGAAGAGA 1003
Query 1023 caggGCAAGGCGCAGAAGTAGAAGCAGGAGTAGGGATCGTAAGAGACATGAAACTGATGA 1082
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1004 CAGGGCAAGGCGCAGAAGTAGAAGCAGGAGTAGGGATCGTAAAAGACACGAAACTGATGA 1063
Query 1083 TGTGCGGGATCGggaagaacctaagaaaaagaaagaaaagaaggagaagatgaaggaaga 1142
||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||
Sbjct 1064 TGTGCGGGATCGGGAAGAACCGAAGAAAAAGAAGGAAAAGAAGGAGAAGATGAGGGAAGA 1123
Query 1143 tggaaCCGATCATCCAAATCCTGAAATTGCAGAGATG-AA-TAGACTGAGAGCATCACTG 1200
|||||| ||||||||| |||||||||||||||| | | || |||||||||||| ||||||
Sbjct 1124 TGGAACTGATCATCCAGATCCTGAAATTGCAGA-A-GCAAATAGACTGAGAGCGTCACTG 1181
Query 1201 GGAATGAAACCCCTCAGGGACTGAACTGTGAAA-TGAG-GACATCTTTATCAAACCGAA- 1257
||| |||||||| | ||| || | | | || | || | || | || | ||| ||
Sbjct 1182 GGACTGAAACCCTTGAGGC-CTTAGCAG-GAGACTG-GTGA-A-CTGTG--AAAT-GAGG 1233
Query 1258 ACTTGGTTCATTTGCCCAGCTAAACCGGTTACTACACTGTGATCCTACTCACTATAGTTT 1317
|| | | || | | | || |||||||| ||||||||||||||||| | |||||
Sbjct 1234 ACATCCT--AT---CAAACC-AA-CCGGTTACCACACTGTGATCCTACTCGGTTTAGTTA 1286
Query 1318 TGGtttttttGAGTTTACCTGATCCCTCTTTAATGTAGAACAAAATGGAGAATCTGTAAT 1377
||||||| ||||| | |||||||||| || ||||||||||||||||||||||| ||||
Sbjct 1287 TGGTTTTC--GAGTT-ATCTGATCCCTCGTTGATGTAGAACAAAATGGAGAATCTTTAAT 1343
Query 1378 GGCATTGTACTGTATGTTCT 1397
|||||||||| |||||||||
Sbjct 1344 GGCATTGTACGGTATGTTCT 1363
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55878389415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5