BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G40650.1 Length=1493 Score E Sequences producing significant alignments: (Bits) Value Ahg483124 jgi|Araly1|483124|fgenesh2_kg.4__2184__AT2G40650.1 1836 0.0 > Ahg483124 jgi|Araly1|483124|fgenesh2_kg.4__2184__AT2G40650.1 Length=1363 Score = 1836 bits (994), Expect = 0.0 Identities = 1272/1400 (91%), Gaps = 44/1400 (3%) Strand=Plus/Plus Query 5 TCTTCAAAGACCTAGAGTGTCTTCGTCTTCGACGACGGCAAATTCGTGGAAGCTGTTTCA 64 ||||||||| ||||||||||||||||| || |||||||||||||||||||||| |||||| Sbjct 1 TCTTCAAAGCCCTAGAGTGTCTTCGTC-TCTACGACGGCAAATTCGTGGAAGCGGTTTCA 59 Query 65 TCGATTCCGGCTTCACTGAAGCGGCGTCGCTCGACGTTTATTATTCCGACGACTAGGCCT 124 | | | ||| | | ||| || | || |||| || |||||||||||||||||||| Sbjct 60 ---A---C-GATTC-C-G--GCGTCG-C-CT-GACGCTTGTTATTCCGACGACTAGGCCT 105 Query 125 TTGAGGCAGTTTCTGATTAACTTCAGGCGATAATGGCAAACAGAACAGATCCGTTGG-CA 183 | ||||| || ||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 106 TCGAGGCGGTGTCTGATTAACTTCCGGCGATAATGGCAAACAGAACAGATCCGTTGGCCA 165 Query 184 AAGAATATAAGAGGAACGAATCCGCAGAATCTGGTAGAGAAGATTGTGCGAACGAAGATT 243 || ||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 166 AA-AATATCAGAGGTACGAATCCGCAGAATCTGGTAGAGAAGATTGTGAGAACGAAGATT 224 Query 244 TATCAGCACACCTTTTGGAAGGAGCAGTGCTTTGGTCTCACGGCGGAGACATTGGTGGAC 303 || ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||| Sbjct 225 TACCAGCACACCTTTTGGAAGGAGCAGTGCTTTGGTCTTACGGCGGAGACGTTGGTTGAC 284 Query 304 AAAGCTATGGAGCTCGACCATCTAGGTGGTACCTTTGGTGGTAGCCGCAAGCCTACTCCG 363 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 285 AAAGCTATGGAGCTCGACCATCTTGGTGGTACCTTTGGTGGTAGCCGCAAGCCTACTCCG 344 Query 364 TTCCTTTGCCTCATATTGAAGATGCTTCAAATCCAGCCTGAGAAGGAAATTGTCGTGGAG 423 |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 345 TTCCTTTGCCTCATATTGAAGATGCTACAAATCCAGCCTGAGAAAGAAATTGTCGTGGAG 404 Query 424 TTCATAAAAAATGATGACTACAAATATGTTCGTATTCTTGGTGCGTTCTATCTGCGTCTC 483 ||||||||||| ||||| |||||||||||||||||||| ||||| |||||||| |||||| Sbjct 405 TTCATAAAAAACGATGATTACAAATATGTTCGTATTCTCGGTGCTTTCTATCTCCGTCTC 464 Query 484 ACTGGGACTGATGTTGATGTCTATCGCTACCTCGAACCTCTCTACAATGACTACCGGAAA 543 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 465 ACTGGGACTGATGTTGATGTCTATCGCTACCTCGAACCTCTTTACAATGACTACCGGAAA 524 Query 544 GTGAGACAAAAGTTATCTGATGGGAAGTTTTCGCTGACACATGTGGACGAAGTCATTGAG 603 ||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 525 GTGAGACAAAAGTTAGCTGATGGGAGGTTTTCGTTGACACATGTGGACGAAGTCATTGAG 584 Query 604 GAACTTCTAACCAAGGATTATTCTTGTGATATTGCAATGCCACGTTTGAAGAAAAGGTGG 663 |||||| ||||||||||||||||||| ||||||||||||||||| |||||||| |||||| Sbjct 585 GAACTTTTAACCAAGGATTATTCTTGCGATATTGCAATGCCACGCTTGAAGAAGAGGTGG 644 Query 664 ACGCTTGAACAGAATGGT-TTATTAGAGCCAAGGAAAAGTGTTTTGGAAGACGACTTTGA 722 |||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||| Sbjct 645 ACGCTTGAACAGAATGGTCTT-TTAGAGCCAAGGAAAAGCGTTTTGGAAGACGACTTTGA 703 Query 723 AGAAGAGGAAGAAAAGGAGGAGAATGAAGGGATTGCTGATGGATCTGAAGATGAGATGGA 782 |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||| Sbjct 704 AGAAGAAGAAGAAAAGGAGGAGAATGAAGGGATTGCAGATGGATCTGAAGATGAGAAGGA 763 Query 783 TCAGCGCCGTAAGAGTCCTGAAAGAGAAAGAGAAAGAGACAGAGACAGGAGACGCGACAG 842 ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 764 TCATCAACGTAAGAGTCCTGAAAGAGAAAGAGAAAGAGACAGAGACAGGAGACGCGACAG 823 Query 843 TCATAGACACAGGGATCGTGATTATGACAGAGACTATGATATGGATCGAGATCATGACAG 902 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 824 TCATAGACACAGGGATCGTGATTATGACAGAGACTATGATATGGATCGAGATTATGACAG 883 Query 903 AGACTATGAAAGAGAACGTGGGCATGGTCGAGACCGGGATAgggagagagacagggatca 962 ||||||||||||||||||||||| ||| ||||||||||||||||| |||||||| ||||| Sbjct 884 AGACTATGAAAGAGAACGTGGGCGTGGACGAGACCGGGATAGGGATAGAGACAGAGATCA 943 Query 963 ctatagagagcgagatagggacagggaaagaggcagagatagagaacgagacagaagaga 1022 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 944 CTATAGAGAGCGAGATAGGGACAGGGAACGAGGCAGAGATAGAGAACGAGACAGAAGAGA 1003 Query 1023 caggGCAAGGCGCAGAAGTAGAAGCAGGAGTAGGGATCGTAAGAGACATGAAACTGATGA 1082 |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 1004 CAGGGCAAGGCGCAGAAGTAGAAGCAGGAGTAGGGATCGTAAAAGACACGAAACTGATGA 1063 Query 1083 TGTGCGGGATCGggaagaacctaagaaaaagaaagaaaagaaggagaagatgaaggaaga 1142 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||| Sbjct 1064 TGTGCGGGATCGGGAAGAACCGAAGAAAAAGAAGGAAAAGAAGGAGAAGATGAGGGAAGA 1123 Query 1143 tggaaCCGATCATCCAAATCCTGAAATTGCAGAGATG-AA-TAGACTGAGAGCATCACTG 1200 |||||| ||||||||| |||||||||||||||| | | || |||||||||||| |||||| Sbjct 1124 TGGAACTGATCATCCAGATCCTGAAATTGCAGA-A-GCAAATAGACTGAGAGCGTCACTG 1181 Query 1201 GGAATGAAACCCCTCAGGGACTGAACTGTGAAA-TGAG-GACATCTTTATCAAACCGAA- 1257 ||| |||||||| | ||| || | | | || | || | || | || | ||| || Sbjct 1182 GGACTGAAACCCTTGAGGC-CTTAGCAG-GAGACTG-GTGA-A-CTGTG--AAAT-GAGG 1233 Query 1258 ACTTGGTTCATTTGCCCAGCTAAACCGGTTACTACACTGTGATCCTACTCACTATAGTTT 1317 || | | || | | | || |||||||| ||||||||||||||||| | ||||| Sbjct 1234 ACATCCT--AT---CAAACC-AA-CCGGTTACCACACTGTGATCCTACTCGGTTTAGTTA 1286 Query 1318 TGGtttttttGAGTTTACCTGATCCCTCTTTAATGTAGAACAAAATGGAGAATCTGTAAT 1377 ||||||| ||||| | |||||||||| || ||||||||||||||||||||||| |||| Sbjct 1287 TGGTTTTC--GAGTT-ATCTGATCCCTCGTTGATGTAGAACAAAATGGAGAATCTTTAAT 1343 Query 1378 GGCATTGTACTGTATGTTCT 1397 |||||||||| ||||||||| Sbjct 1344 GGCATTGTACGGTATGTTCT 1363 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55878389415 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5