BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G40660.1 Length=1417 Score E Sequences producing significant alignments: (Bits) Value Ahg483125 jgi|Araly1|483125|fgenesh2_kg.4__2185__AT2G40660.1 2065 0.0 Ahg950467 jgi|Araly1|950467|scaffold_802354.1 231 8e-60 > Ahg483125 jgi|Araly1|483125|fgenesh2_kg.4__2185__AT2G40660.1 Length=1337 Score = 2065 bits (1118), Expect = 0.0 Identities = 1268/1341 (95%), Gaps = 8/1341 (1%) Strand=Plus/Plus Query 18 AGCGAAGAGCCCCAAAGAGAAGAACAAAATTTCGAAAATAGAGAAAGAGAAGAAGTTGAC 77 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AGCGAAGAGCCCCAAAGAGAAGAACAAAATTTCGAAAATAGAGAAAGAGAAGAAGTTGAC 60 Query 78 GATGGATTCAAAGGCGAAGCAGATGATTCTTTCAGCTCTCTGCAAACACTTCTCTTTGGA 137 ||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 61 GATGGATTCAAAGACGAAGCAGATGATTCTATCAGCTCTCTGCAAACACTTCTCCTTGGA 120 Query 138 TCCTGAACCTTTTGTGGGCGGAGCGGGTGAAAGTGATATCAAGACACTTTATTCTAATGT 197 |||||||||||||||||||||||| ||||| |||||| ||||||| |||||||| ||||| Sbjct 121 TCCTGAACCTTTTGTGGGCGGAGCAGGTGATAGTGATGTCAAGACGCTTTATTCCAATGT 180 Query 198 ATTGAAGGCATCTGGAAAGGAAGTATCTGCACAAAACAACGATGTTTTGAAGTGGCTAGA 257 |||||||||||||||||||||| |||||||||||| | || |||||||||||||| || Sbjct 181 TTTGAAGGCATCTGGAAAGGAAGCGTCTGCACAAAACGATGAGGTTTTGAAGTGGCTGGA 240 Query 258 TTTTGCGGAAGGTTTCTCTTCAGATTCAAAGGATTGGTTTTCAGCTCTTGAAAAGTTGAA 317 |||||||||||||||||| |||||||||||| ||| ||| ||||||||||||||||||| Sbjct 241 ATTTGCGGAAGGTTTCTCTGCAGATTCAAAGGGTTGCTTTGCAGCTCTTGAAAAGTTGAA 300 Query 318 TTTAGAGTTAGCTACCAAGTCAGTGCTCTTGGGAAACGGATTGACGCCATCGGCAGCTGA 377 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TTTAGAGTTAGGTACCAAGTCAGTGCTCTTGGGAAACGGATTGACGCCATCGGCAGCTGA 360 Query 378 TGTTGCTGTGTTTTCAGC-TCTGCATTCTTCAGTGCTTGGCCTCTCAGATTCAGACAAGG 436 |||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||| Sbjct 361 TGTTGCTGTGTTTTCAGCAT-TGCATTCTTCAGTGCTTGGCCTCTCAGATTCAAACAAGG 419 Query 437 AGAAAGTACCACATGTCATAAGATGGGTGAATTACATCCAGAATAAAGAAGAGTTGTCGA 496 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 420 AGAAAGTACCACATGTCATAAGATGGGTGAATTACATCCAGAATAAAGAAGAGTTGTCAA 479 Query 497 CATTATTTGCACCAATACCTGTGAAGCTACCAGAATTTAG-CTTCGAGGTACCAAAACCT 555 |||||||||||||||||||||||||||||||||||||| | |||||||||| |||| ||| Sbjct 480 CATTATTTGCACCAATACCTGTGAAGCTACCAGAATTT-GACTTCGAGGTATCAAAGCCT 538 Query 556 GCCATTAAGGTGGAAACAAATTCTAATTCaaaaaaaGCTGCAGAAGGTGTAAAGCCTGTT 615 ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 539 GCCATTAAGGTGGAAGCAAATTCTAATACAAAAAAAGCTGCAGAAGGTGTAAAGCCTGTT 598 Query 616 GACAAGCCAGATGTGCAGCCGCAGCTGGGCACAAagaaaactgagccagaggaaccaaag 675 |||||| |||| | |||||||||| | || |||||||||||||||| |||||||||||| Sbjct 599 GACAAGTCAGAAGCACAGCCGCAGCCGAGCGCAAAGAAAACTGAGCCTGAGGAACCAAAG 658 Query 676 aaaaatgcagcaaaagagaaggatgccaaaaaggaaaagaagaagCCTGCTGAACCAGAA 735 ||||||||| ||||||| |||||||||||||||||||||||||| ||||||||| ||||| Sbjct 659 AAAAATGCAACAAAAGAAAAGGATGCCAAAAAGGAAAAGAAGAAACCTGCTGAAACAGAA 718 Query 736 CCAGCTAAGAAAGAGGCAGAGCTTAGTGTCAGTTTGCTTAACATTCAGGTTGGTCTAATT 795 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 719 CCAGCTAAGAAAGAGGCAGAGCTTAGTGTCAGTTTGCTTAATATTCAGGTTGGTCTAATT 778 Query 796 CGTAAAGCATGGAAGCACCCATCGGCGGATAGTTTGCTGGTGGAAGAAATAGATGTCGGG 855 || ||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 779 CGCAAAGCATGGAAGCACCCTTCTGCGGATAGTTTGCTGGTGGAAGAAATAGATGTCGGG 838 Query 856 GAGGATAAAGTGAGACAAGTAGTTAGTGGCTTAGCAAAGTTCTGCAGTCCTGAGGATCTA 915 |||||||||||||| |||||||||||||||||||| |||||||||| |||||| |||||| Sbjct 839 GAGGATAAAGTGAGGCAAGTAGTTAGTGGCTTAGCGAAGTTCTGCAATCCTGATGATCTA 898 Query 916 ACGAACCGCCTCGTTGCACTCATCACAAATGTCAAACCTGGAAAGCTAAGAGATGTAATG 975 ||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 899 ACGAACCGCCTTGTTGCGCTTATCACAAATGTCAAACCTGGAAAGCTAAGAGATGTAATG 958 Query 976 TCACAAGGACTGGTTCTTTGTGCTTCAAGTGAAGATCACTCGGTGGTAGAGCCGTTGCTA 1035 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 959 TCACAAGGACTGGTTCTTTGTGCTTCAAGTGAAGATCACTCGGTGGTAGAGCCGTTGCTA 1018 Query 1036 CCACCTGCTGGTGCTAAACCAGGAGAGCGTGTTTCATTTTCAGGGATTGAAGGAAAGCCA 1095 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1019 CCACCTGCTGGGGCTAAACCAGGAGAGCGTGTTTCATTTTCAGGGATTGAAGGAAAGCCA 1078 Query 1096 GAAGATGTACTGAACCCAAAAAAGAAGCAACTAGAGAAGATAACACCGGGTCTCTACACT 1155 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1079 GAGGATGTACTGAACCCAAAAAAGAAGCAACTAGAGAAGATAACACCGGGTCTCTACACT 1138 Query 1156 GATGAAAATGGCGTAGCCACATACAAAGGCATACAATTCATGACCTCGGCTGGACCTTGC 1215 ||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||| Sbjct 1139 GATGAGAATGGCGTAGCCACATACAAAGGCATACCATTTATGACCTCGGCTGGACCTTGC 1198 Query 1216 ACTTCCAGCATCCCCAAGGCGACCATCAAGTAGTAAACTCAGTTGATACTTCTCTCCTCT 1275 |||||||| || |||||||| ||||||||||||||||||||||||||||||||| | ||| Sbjct 1199 ACTTCCAGTATTCCCAAGGCTACCATCAAGTAGTAAACTCAGTTGATACTTCTC-C-TCT 1256 Query 1276 ACTCTAGCGTTTTTCTTTGATATTCGCAAACTCAGTTGGAAAAAGAAAA-GATGTTC-TT 1333 | |||||||||| ||||| ||||||||||||||||||||||||||||| |||||| || Sbjct 1257 TCGCTAGCGTTTTGCTTTGTTATTCGCAAACTCAGTTGGAAAAAGAAAAAGATGTTTATT 1316 Query 1334 TTTGTCACAATTCGAATTAAT 1354 ||||||||| || |||||||| Sbjct 1317 TTTGTCACATTTTGAATTAAT 1337 > Ahg950467 jgi|Araly1|950467|scaffold_802354.1 Length=1283 Score = 231 bits (125), Expect = 8e-60 Identities = 131/134 (98%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 1080 GATTGAAGGAAAGCCAGAAGATGTACTGAACCCAAAAAAGAAGCAACTAGAGAAGATAAC 1139 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 123 GATTGAAGGAAAGCCAGAAGACGTACTGAACCCAAAAAAGAAGCAACTAGAGAAGATAAC 182 Query 1140 ACCGGGTCTCTACACTGATGAAAATGGCGTAGCCACATACAAAGGCATACAATTCATGAC 1199 ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| Sbjct 183 ACCGGGTCTCTACACTGATGAGAATGGCGTAGCCACATACAAAGGCATACCATTCATGAC 242 Query 1200 CTCGGCTGGACCTT 1213 |||||||||||||| Sbjct 243 CTCGGCTGGACCTT 256 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52983530795 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5