BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40660.1
Length=1417
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483125 jgi|Araly1|483125|fgenesh2_kg.4__2185__AT2G40660.1 2065 0.0
Ahg950467 jgi|Araly1|950467|scaffold_802354.1 231 8e-60
> Ahg483125 jgi|Araly1|483125|fgenesh2_kg.4__2185__AT2G40660.1
Length=1337
Score = 2065 bits (1118), Expect = 0.0
Identities = 1268/1341 (95%), Gaps = 8/1341 (1%)
Strand=Plus/Plus
Query 18 AGCGAAGAGCCCCAAAGAGAAGAACAAAATTTCGAAAATAGAGAAAGAGAAGAAGTTGAC 77
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGCGAAGAGCCCCAAAGAGAAGAACAAAATTTCGAAAATAGAGAAAGAGAAGAAGTTGAC 60
Query 78 GATGGATTCAAAGGCGAAGCAGATGATTCTTTCAGCTCTCTGCAAACACTTCTCTTTGGA 137
||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 61 GATGGATTCAAAGACGAAGCAGATGATTCTATCAGCTCTCTGCAAACACTTCTCCTTGGA 120
Query 138 TCCTGAACCTTTTGTGGGCGGAGCGGGTGAAAGTGATATCAAGACACTTTATTCTAATGT 197
|||||||||||||||||||||||| ||||| |||||| ||||||| |||||||| |||||
Sbjct 121 TCCTGAACCTTTTGTGGGCGGAGCAGGTGATAGTGATGTCAAGACGCTTTATTCCAATGT 180
Query 198 ATTGAAGGCATCTGGAAAGGAAGTATCTGCACAAAACAACGATGTTTTGAAGTGGCTAGA 257
|||||||||||||||||||||| |||||||||||| | || |||||||||||||| ||
Sbjct 181 TTTGAAGGCATCTGGAAAGGAAGCGTCTGCACAAAACGATGAGGTTTTGAAGTGGCTGGA 240
Query 258 TTTTGCGGAAGGTTTCTCTTCAGATTCAAAGGATTGGTTTTCAGCTCTTGAAAAGTTGAA 317
|||||||||||||||||| |||||||||||| ||| ||| |||||||||||||||||||
Sbjct 241 ATTTGCGGAAGGTTTCTCTGCAGATTCAAAGGGTTGCTTTGCAGCTCTTGAAAAGTTGAA 300
Query 318 TTTAGAGTTAGCTACCAAGTCAGTGCTCTTGGGAAACGGATTGACGCCATCGGCAGCTGA 377
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTTAGAGTTAGGTACCAAGTCAGTGCTCTTGGGAAACGGATTGACGCCATCGGCAGCTGA 360
Query 378 TGTTGCTGTGTTTTCAGC-TCTGCATTCTTCAGTGCTTGGCCTCTCAGATTCAGACAAGG 436
|||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||
Sbjct 361 TGTTGCTGTGTTTTCAGCAT-TGCATTCTTCAGTGCTTGGCCTCTCAGATTCAAACAAGG 419
Query 437 AGAAAGTACCACATGTCATAAGATGGGTGAATTACATCCAGAATAAAGAAGAGTTGTCGA 496
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 420 AGAAAGTACCACATGTCATAAGATGGGTGAATTACATCCAGAATAAAGAAGAGTTGTCAA 479
Query 497 CATTATTTGCACCAATACCTGTGAAGCTACCAGAATTTAG-CTTCGAGGTACCAAAACCT 555
|||||||||||||||||||||||||||||||||||||| | |||||||||| |||| |||
Sbjct 480 CATTATTTGCACCAATACCTGTGAAGCTACCAGAATTT-GACTTCGAGGTATCAAAGCCT 538
Query 556 GCCATTAAGGTGGAAACAAATTCTAATTCaaaaaaaGCTGCAGAAGGTGTAAAGCCTGTT 615
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 539 GCCATTAAGGTGGAAGCAAATTCTAATACAAAAAAAGCTGCAGAAGGTGTAAAGCCTGTT 598
Query 616 GACAAGCCAGATGTGCAGCCGCAGCTGGGCACAAagaaaactgagccagaggaaccaaag 675
|||||| |||| | |||||||||| | || |||||||||||||||| ||||||||||||
Sbjct 599 GACAAGTCAGAAGCACAGCCGCAGCCGAGCGCAAAGAAAACTGAGCCTGAGGAACCAAAG 658
Query 676 aaaaatgcagcaaaagagaaggatgccaaaaaggaaaagaagaagCCTGCTGAACCAGAA 735
||||||||| ||||||| |||||||||||||||||||||||||| ||||||||| |||||
Sbjct 659 AAAAATGCAACAAAAGAAAAGGATGCCAAAAAGGAAAAGAAGAAACCTGCTGAAACAGAA 718
Query 736 CCAGCTAAGAAAGAGGCAGAGCTTAGTGTCAGTTTGCTTAACATTCAGGTTGGTCTAATT 795
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 719 CCAGCTAAGAAAGAGGCAGAGCTTAGTGTCAGTTTGCTTAATATTCAGGTTGGTCTAATT 778
Query 796 CGTAAAGCATGGAAGCACCCATCGGCGGATAGTTTGCTGGTGGAAGAAATAGATGTCGGG 855
|| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 779 CGCAAAGCATGGAAGCACCCTTCTGCGGATAGTTTGCTGGTGGAAGAAATAGATGTCGGG 838
Query 856 GAGGATAAAGTGAGACAAGTAGTTAGTGGCTTAGCAAAGTTCTGCAGTCCTGAGGATCTA 915
|||||||||||||| |||||||||||||||||||| |||||||||| |||||| ||||||
Sbjct 839 GAGGATAAAGTGAGGCAAGTAGTTAGTGGCTTAGCGAAGTTCTGCAATCCTGATGATCTA 898
Query 916 ACGAACCGCCTCGTTGCACTCATCACAAATGTCAAACCTGGAAAGCTAAGAGATGTAATG 975
||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 899 ACGAACCGCCTTGTTGCGCTTATCACAAATGTCAAACCTGGAAAGCTAAGAGATGTAATG 958
Query 976 TCACAAGGACTGGTTCTTTGTGCTTCAAGTGAAGATCACTCGGTGGTAGAGCCGTTGCTA 1035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TCACAAGGACTGGTTCTTTGTGCTTCAAGTGAAGATCACTCGGTGGTAGAGCCGTTGCTA 1018
Query 1036 CCACCTGCTGGTGCTAAACCAGGAGAGCGTGTTTCATTTTCAGGGATTGAAGGAAAGCCA 1095
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 CCACCTGCTGGGGCTAAACCAGGAGAGCGTGTTTCATTTTCAGGGATTGAAGGAAAGCCA 1078
Query 1096 GAAGATGTACTGAACCCAAAAAAGAAGCAACTAGAGAAGATAACACCGGGTCTCTACACT 1155
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 GAGGATGTACTGAACCCAAAAAAGAAGCAACTAGAGAAGATAACACCGGGTCTCTACACT 1138
Query 1156 GATGAAAATGGCGTAGCCACATACAAAGGCATACAATTCATGACCTCGGCTGGACCTTGC 1215
||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1139 GATGAGAATGGCGTAGCCACATACAAAGGCATACCATTTATGACCTCGGCTGGACCTTGC 1198
Query 1216 ACTTCCAGCATCCCCAAGGCGACCATCAAGTAGTAAACTCAGTTGATACTTCTCTCCTCT 1275
|||||||| || |||||||| ||||||||||||||||||||||||||||||||| | |||
Sbjct 1199 ACTTCCAGTATTCCCAAGGCTACCATCAAGTAGTAAACTCAGTTGATACTTCTC-C-TCT 1256
Query 1276 ACTCTAGCGTTTTTCTTTGATATTCGCAAACTCAGTTGGAAAAAGAAAA-GATGTTC-TT 1333
| |||||||||| ||||| ||||||||||||||||||||||||||||| |||||| ||
Sbjct 1257 TCGCTAGCGTTTTGCTTTGTTATTCGCAAACTCAGTTGGAAAAAGAAAAAGATGTTTATT 1316
Query 1334 TTTGTCACAATTCGAATTAAT 1354
||||||||| || ||||||||
Sbjct 1317 TTTGTCACATTTTGAATTAAT 1337
> Ahg950467 jgi|Araly1|950467|scaffold_802354.1
Length=1283
Score = 231 bits (125), Expect = 8e-60
Identities = 131/134 (98%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 1080 GATTGAAGGAAAGCCAGAAGATGTACTGAACCCAAAAAAGAAGCAACTAGAGAAGATAAC 1139
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 123 GATTGAAGGAAAGCCAGAAGACGTACTGAACCCAAAAAAGAAGCAACTAGAGAAGATAAC 182
Query 1140 ACCGGGTCTCTACACTGATGAAAATGGCGTAGCCACATACAAAGGCATACAATTCATGAC 1199
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 183 ACCGGGTCTCTACACTGATGAGAATGGCGTAGCCACATACAAAGGCATACCATTCATGAC 242
Query 1200 CTCGGCTGGACCTT 1213
||||||||||||||
Sbjct 243 CTCGGCTGGACCTT 256
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52983530795
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5