BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40670.2
Length=640
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483126 jgi|Araly1|483126|fgenesh2_kg.4__2186__AT2G40670.1 881 0.0
> Ahg483126 jgi|Araly1|483126|fgenesh2_kg.4__2186__AT2G40670.1
Length=571
Score = 881 bits (477), Expect = 0.0
Identities = 550/583 (94%), Gaps = 13/583 (2%)
Strand=Plus/Plus
Query 29 ATGAACAGTTCAGGAGGTTCTTGTTCGTCTTTAATGGATGTGGTGGCTTATGATCATCAT 88
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
Sbjct 1 ATGAACAGTTCAGGAGGTTCTTGTTCGTCTTTAATGGATGTGGTGACTTATGATC--C-T 57
Query 89 CTTCATCATGGTCATGATGAAGAGCTTCATGTTTTAGCTGTAGATGATAATCTTATTGAC 148
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 58 CATCATCATGGTCATGATGAAGAGCTTCATGTTTTAGCTGTAGATGATAATCTAATTGAC 117
Query 149 CGTAAACTCGTTGAGAGGTTGCTCAAGATCTCTTGTTGCAAAGTGACAACAGCAGAGAAT 208
||||||||||| |||| ||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 118 CGTAAACTCGTAGAGAAGTTGCTCAAGATCTCTTCTTGCAAAGTCACAACAGCAGAGAAT 177
Query 209 GCGCTTAGAGCATTGGAGTATTTGGGTTTGGGAGATCAAAATCAGCATATTGATGCATTG 268
||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 178 GCGATAAGAGCATTGGAGTATTTGGGTTTGGGAGACCAAAATCAGCATATTGATGCATTG 237
Query 269 ACCTGTAACGTTATGAAGGTGAGTCTAATCATCACCGATTACTGTATGCCTGGAATGACA 328
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 238 ACCTGTAACGTTATGAAGGTGAACCTAATCATCACAGATTACTGTATGCCTGGAATGACA 297
Query 329 GGTTTTGAGCTACTCAAGAAAGTGAAGCAGGAGTCATCAAATCTGAGAGAGGTTCCTGTT 388
||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 298 GGTTTTGAGCTGCTCAAGAAAGTG-A--AGGAGTCATCAAATCTGAGAGAGGTTCCTGTT 354
Query 389 GTGATAATGTCTTCAGAGAATATTCCTACTCGCATAAACAAATGTTTAGCGAGTGGAGCT 448
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 355 GTGATAATGTCTTCAGAGAATATTCCTACTCGCATCAACAAATGTTTAGCGAGTGGAGCT 414
Query 449 CAAATGTTTATGCAGAAGCCTTTGAAGCT-TGCTGATGTTGAGAAGCTTAAATGTCATCT 507
|||||||||||||||||||||||||| || | ||||||||||||| ||||| ||||||||
Sbjct 415 CAAATGTTTATGCAGAAGCCTTTGAAACTGT-CTGATGTTGAGAAACTTAAGTGTCATCT 473
Query 508 CATGAACTGCAGAAGCTAACCATGAGAGATTTATAATGTTAGCCCTAACCATGAAACGTT 567
||||||||||||||||||||||||||||||||| | |||||| |||||||||||||| ||
Sbjct 474 CATGAACTGCAGAAGCTAACCATGAGAGATTTA-A-TGTTAGTCCTAACCATGAAACATT 531
Query 568 TTCATTGTGTCTTGATTCCTTATTTGATTATTTTACATGTTTT 610
| |||||| |||||||||||||||||||||||||||||||||
Sbjct 532 T-CATTGT--CTTGATTCCTTATTTGATTATTTTACATGTTTT 571
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23445593955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5