BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G40670.2 Length=640 Score E Sequences producing significant alignments: (Bits) Value Ahg483126 jgi|Araly1|483126|fgenesh2_kg.4__2186__AT2G40670.1 881 0.0 > Ahg483126 jgi|Araly1|483126|fgenesh2_kg.4__2186__AT2G40670.1 Length=571 Score = 881 bits (477), Expect = 0.0 Identities = 550/583 (94%), Gaps = 13/583 (2%) Strand=Plus/Plus Query 29 ATGAACAGTTCAGGAGGTTCTTGTTCGTCTTTAATGGATGTGGTGGCTTATGATCATCAT 88 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | | Sbjct 1 ATGAACAGTTCAGGAGGTTCTTGTTCGTCTTTAATGGATGTGGTGACTTATGATC--C-T 57 Query 89 CTTCATCATGGTCATGATGAAGAGCTTCATGTTTTAGCTGTAGATGATAATCTTATTGAC 148 | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 58 CATCATCATGGTCATGATGAAGAGCTTCATGTTTTAGCTGTAGATGATAATCTAATTGAC 117 Query 149 CGTAAACTCGTTGAGAGGTTGCTCAAGATCTCTTGTTGCAAAGTGACAACAGCAGAGAAT 208 ||||||||||| |||| ||||||||||||||||| ||||||||| ||||||||||||||| Sbjct 118 CGTAAACTCGTAGAGAAGTTGCTCAAGATCTCTTCTTGCAAAGTCACAACAGCAGAGAAT 177 Query 209 GCGCTTAGAGCATTGGAGTATTTGGGTTTGGGAGATCAAAATCAGCATATTGATGCATTG 268 ||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 178 GCGATAAGAGCATTGGAGTATTTGGGTTTGGGAGACCAAAATCAGCATATTGATGCATTG 237 Query 269 ACCTGTAACGTTATGAAGGTGAGTCTAATCATCACCGATTACTGTATGCCTGGAATGACA 328 |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 238 ACCTGTAACGTTATGAAGGTGAACCTAATCATCACAGATTACTGTATGCCTGGAATGACA 297 Query 329 GGTTTTGAGCTACTCAAGAAAGTGAAGCAGGAGTCATCAAATCTGAGAGAGGTTCCTGTT 388 ||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||| Sbjct 298 GGTTTTGAGCTGCTCAAGAAAGTG-A--AGGAGTCATCAAATCTGAGAGAGGTTCCTGTT 354 Query 389 GTGATAATGTCTTCAGAGAATATTCCTACTCGCATAAACAAATGTTTAGCGAGTGGAGCT 448 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 355 GTGATAATGTCTTCAGAGAATATTCCTACTCGCATCAACAAATGTTTAGCGAGTGGAGCT 414 Query 449 CAAATGTTTATGCAGAAGCCTTTGAAGCT-TGCTGATGTTGAGAAGCTTAAATGTCATCT 507 |||||||||||||||||||||||||| || | ||||||||||||| ||||| |||||||| Sbjct 415 CAAATGTTTATGCAGAAGCCTTTGAAACTGT-CTGATGTTGAGAAACTTAAGTGTCATCT 473 Query 508 CATGAACTGCAGAAGCTAACCATGAGAGATTTATAATGTTAGCCCTAACCATGAAACGTT 567 ||||||||||||||||||||||||||||||||| | |||||| |||||||||||||| || Sbjct 474 CATGAACTGCAGAAGCTAACCATGAGAGATTTA-A-TGTTAGTCCTAACCATGAAACATT 531 Query 568 TTCATTGTGTCTTGATTCCTTATTTGATTATTTTACATGTTTT 610 | |||||| ||||||||||||||||||||||||||||||||| Sbjct 532 T-CATTGT--CTTGATTCCTTATTTGATTATTTTACATGTTTT 571 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23445593955 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5