BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40690.1
Length=1595
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483127 jgi|Araly1|483127|fgenesh2_kg.4__2187__AT2G40690.1 2567 0.0
> Ahg483127 jgi|Araly1|483127|fgenesh2_kg.4__2187__AT2G40690.1
Length=1585
Score = 2567 bits (1390), Expect = 0.0
Identities = 1529/1595 (96%), Gaps = 13/1595 (1%)
Strand=Plus/Plus
Query 1 AAGAATAACTGCAAAAGACGAAAAAGAATCTGTTCAct--ctctctctctctggctcgct 58
||||||||||||||||||||||||||| ||| |||||| ||||||||| || |||||||
Sbjct 1 AAGAATAACTGCAAAAGACGAAAAAGATTCTCTTCACTCGCTCTCTCTCGCTCGCTCGCT 60
Query 59 cgctctcAATCTTTCCGATTTGGTTGGGTTCTTCTCCAACTCCAAGTCTCTGCGAAAATG 118
| |||||||||||||||||||||||||| || | | |||||||||||||||||||||
Sbjct 61 CTCTCTCAATCTTTCCGATTTGGTTGGG-TC-T-T----CTCCAAGTCTCTGCGAAAATG 113
Query 119 GCGGCTTCGGTGCAACCTGCATGCTTAGACCTCCACTTCTCCGGAAAGCATCCACCGCTT 178
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 114 GCGGCTTCGGTGCAACCTGCATGCTTAGACCTCCATTTCTCCGGCAAGCATCCACCGCTT 173
Query 179 CTTAAACACAACGCTATTATCGTCCGCTGCGTTTCTTCTCCAAATGTAATTCCCGAAGCT 238
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 174 CTTAAACACAACGCTATTTTCGTCCGCTGCGTTTCTTCTCCAAATGTAATTCCCGAAGCT 233
Query 239 GACTCCATCTCTGGTCCGCCTGATATCATCAATACGAACCGTGACCAGCGCAAAGTGGTT 298
||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 234 GACTCCATCTCCGGTCCGCCTGATATCATCAATACGAGCCGTGACCAGCGCAAAGTCGTT 293
Query 299 CGTATCGCTTGGGAGAAGTTGGTTCGATGGTCTCGTTCTTTGCGCGCTAAAGCTAAAACC 358
|||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 294 CGTATCGCGTGGGAGAAGTTGGTTCGATGGTCTCGTTCTTGGCGCGCTAAAGCTAAAACT 353
Query 359 GATGTTCTTGAGCGTACTCGCAAGGTTGTTGTTCTTGGTGGAGGTTCGTTTGGTACTGCA 418
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 GATGTTCTTGAGCGCACTCGCAAGGTTGTTGTTCTTGGTGGAGGTTCGTTTGGTACTGCA 413
Query 419 ATGGCTGCTCATGTAGCTAGAAGGAAAGAGGGATTAGAGGTTAATATGCTTGTTCGTGAC 478
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 414 ATGGCTGCTCATGTAGCTAGAAGGAAAGAGGGATTGGAGGTTAATATGCTTGTTCGTGAC 473
Query 479 TCTTTTGTTTGTCAATCTATCAACGAGAACCACCATAATTGTAAGTATTTTCCTGAGCAC 538
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 474 TCTTTTGTTTGCCAATCTATCAACGATAACCACCATAATTGTAAGTATTTTCCTGAGCAC 533
Query 539 AAGTTACCTGAGAATGTGATTGCTACAACTGATGCGAAAGCTGCATTGCTTGATGCTGAT 598
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 534 AAGTTACCTGAGAATGTGATTGCTACTACTGACGCGAAAGCTGCATTGCTTGATGCTGAT 593
Query 599 TACTGCCTTCATGCCGTGCCTGTGCAGTTTAGCTC-TTCGTTTCTAGAGGGAATTGCCGA 657
|| ||||| |||||||| ||||||||||| ||||| || |||||||||||||||||||||
Sbjct 594 TATTGCCTCCATGCCGTACCTGTGCAGTTCAGCTCATT-GTTTCTAGAGGGAATTGCCGA 652
Query 658 TTATGTCGATCCAGGATTGCCTTTTATATCTCTTAGCAAAGGTCTGGAGCTTAATACTCT 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 TTATGTCGATCCAGGATTGCCTTTTATATCTCTTAGCAAAGGTCTGGAGCTTAATACTCT 712
Query 718 TAGGATGATGTCTCAGATCATTCCCATTGCGCTTAAGAATCCCCGGCAACCTTTTGTTGC 777
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 713 TAGGATGATGTCTCAGATCATTCCCACTGCGCTTAAGAATCCCCGGCAACCTTTTGTTGC 772
Query 778 TCTTTCTGGCCCGTCATTTGCTCTGGAGCTGATGAACAATTTACCAACTGCAATGGTGGT 837
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 773 TCTTTCTGGCCCGTCATTTGCTCTGGAGCTAATGAACAATTTACCAACTGCAATGGTGGT 832
Query 838 TGCCTCAAAAGATAAGAAATTGGCCAATGCTGTTCAGCAGCTTCTTGCTTCTAGTTACTT 897
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 833 TGCCTCGAAAGATAAGAAATTGGCCAATGCTGTTCAGCAGCTTCTGGCTTCTAGTTACTT 892
Query 898 GAGAATAAATACTTCCAGTGATGTTACAGGCGTGGAAATCGCCGGTGCCCTGAAGAATGT 957
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 893 GAGAATAAATACTTCCAGTGATGTTACAGGCGTGGAAATTGCCGGTGCCCTGAAGAATGT 952
Query 958 TCTAGCAATAGCTGCAGGAATTGTTGATGGAATGAATCTCGGTAACAACTCTATGGCAGC 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 TCTAGCAATAGCTGCAGGAATTGTTGATGGAATGAATCTCGGTAACAACTCTATGGCAGC 1012
Query 1018 TCTTGTGTCCCAAGGTTGTTCAGAGATAAGATGGTTAGCCACAAAGATGGGTGCAAAGCC 1077
||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1013 ACTTGTATCACAAGGTTGTTCAGAGATAAGATGGCTAGCCACAAAGATGGGTGCAAAGCC 1072
Query 1078 AACAACCATTACTGGTTTATCAGGAACTGGGGACATAATGCTTACGTGTTTTGTAAATCT 1137
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 AACAACCATAACTGGTTTATCAGGAACTGGGGACATAATGCTTACGTGTTTTGTAAATCT 1132
Query 1138 TTCAAGAAACCGAACAGTTGGAGTCAGGTTAGGGTCAGGGGAGACACTAGATGACATACT 1197
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1133 TTCAAGAAACCGAACAGTTGGAGTCAGGTTAGGGTCAGGGGAGACATTAGATGACATACT 1192
Query 1198 AACCTCTATGAATCAGGTTGCAGAAGGTGTAGCAACAGCCGGGGCAGTGATAGCATTAGC 1257
|||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1193 AACCTCCATGAATCAGGTTGCAGAAGGTGTAGCAACCGCTGGGGCAGTGATAGCATTAGC 1252
Query 1258 ACAGAAATACAATGTGAAACTGCCGGTTTTGACAGCCGTAGCTAAGATAATAGATAATGA 1317
||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1253 ACAAAAATACAATGTGAAACTACCGGTTTTGACAGCTGTAGCTAAGATAATAGATAATGA 1312
Query 1318 ACTGACCCCGACTAAGGCTGTTCTTGAGCTCATGAACCTTCCTCAGATTGAAGAAGTATG 1377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1313 ACTGACCCCGACTAAGGCTGTTCTTGAGCTCATGAACCTTCCTCAGATTGAAGAAGTATG 1372
Query 1378 AGGTAGAACAATCGTTTTGAGGACCACATATTCAAAGAGATGGCTTTAAGGCGGCAAGAG 1437
|| | ||||||||||||||||||||| ||||| |||||||| ||||||||||||| ||||
Sbjct 1373 AGATGGAACAATCGTTTTGAGGACCAAATATTAAAAGAGATAGCTTTAAGGCGGCGAGAG 1432
Query 1438 CTTTGCATTCGTTTAGAGATAGCTAACGATAGAGATGATTCGAAGTGAGTTTTGTAATCG 1497
|||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||
Sbjct 1433 CTTTGCATTCGTTTAGAGATAGCTAATGATAGAGATGATTCAAAATGAGTTTTGTAATCG 1492
Query 1498 ATTTTTAGGCCTGAATCTCATGAATGTGAATTGTTCATAAACATTTTACAAAATCTCTGT 1557
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1493 ATTTT-AGGCCTGATTCTCATGAATGTGAATTGTTCATAAACATTTTACAAAATCTCTGT 1551
Query 1558 AAATTTTTCTCTTACATCTATAAAAATGATGTTTC 1592
||| ||||||| | |||||||||||||||||||||
Sbjct 1552 AAAGTTTTCTCAT-CATCTATAAAAATGATGTTTC 1585
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59763594405
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5