BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40740.1
Length=880
Score E
Sequences producing significant alignments: (Bits) Value
Ahg321760 jgi|Araly1|321760|fgenesh1_pm.C_scaffold_4001817 1234 0.0
> Ahg321760 jgi|Araly1|321760|fgenesh1_pm.C_scaffold_4001817
Length=900
Score = 1234 bits (668), Expect = 0.0
Identities = 797/858 (93%), Gaps = 13/858 (2%)
Strand=Plus/Plus
Query 31 ATGGAAGAGGTAATGTCAATGATCTTCCACGGAATGAAACTAGTTAAATCGCTCGAGTCC 90
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 ATGGAAGAGGTAATGTCAATGATCTTCCACGGAATGAAACTAGTTAAAACGCTCGAGTCC 60
Query 91 AGCTTACCGGAAAAGCCACCGGAATCTCTATTGACATCTCTTGACGAGATCGTAAAGACA 150
|||||||||||||||||||||||||| |||| || ||||||||||| |||| |||||||
Sbjct 61 AGCTTACCGGAAAAGCCACCGGAATCGCTATCAACCTCTCTTGACGAAATCGCAAAGACA 120
Query 151 TTCAGTGATGCAAACGAGCGGCTGAAGATGTTACTAGAGATTAAG-AACTCCGAGACTGC 209
|||||||||||||||||||||||||||||||||||||| ||| || ||||||||||| ||
Sbjct 121 TTCAGTGATGCAAACGAGCGGCTGAAGATGTTACTAGAAATT-AGAAACTCCGAGACCGC 179
Query 210 GTTAAACAAAAC-CAAACCGGTGATTGTGTCCGTTGCAAACCAGATGTTGATGCAGATGG 268
||| ||| ||| |||||||||| ||| ||||||||||||||||||||| ||||||||||
Sbjct 180 GTTGAAC-CAACTCAAACCGGTGGTTGCGTCCGTTGCAAACCAGATGTTAATGCAGATGG 238
Query 269 AACCGGGTCTGATGCAAGAGTATTGGTTAAGGTATGGCGGGTCCACGTCGTCTC---AAG 325
||||| || |||||||||||||||||||||||| ||||||||| ||||| |||| |||
Sbjct 239 AACCGAGTTTGATGCAAGAGTATTGGTTAAGGTGTGGCGGGTCTACGTCATCTCATGAAG 298
Query 326 GAACGGAGGCCATGTTCCAGACGCAGCTCATGGCCGTTGATGGTGGTGGAGAAAGGAATT 385
|||| ||||||||||| |||||||||||||||||||||||||||||||| | ||||||||
Sbjct 299 GAACCGAGGCCATGTTTCAGACGCAGCTCATGGCCGTTGATGGTGGTGGTGGAAGGAATT 358
Query 386 TGACGGCTGCAGTAGAAAGATCCGGCGCTAGCGGTTCCTCCACGCCAAGGCAGCGGAGAA 445
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TGACGGCTGCAGCAGAAGGATCCGGCGCTAGCGGTTCCTCCACGCCAAGGCAGCGGAGAA 418
Query 446 GGAAGGACGAAGGAGAAGAACAAACGGTGTTGGTGGCGGCGCTAAGGACGGGGAACACAG 505
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 419 GGAAGGACGAAGGAGAAGAACAAACTGTGTTGGTGGCGGCGCTAAGGACAGGGAACACAG 478
Query 506 ATCTGCCACCCGACGATAACCATACTTGGCGTAAATACGGTCAAAAAGAAATTCTTGGCT 565
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 479 ATCTGCCACCTGACGATAACCATACTTGGCGTAAATACGGTCAAAAGGAAATTCTTGGCT 538
Query 566 CTAGGTTTCCTAGGGCGTACTATAGGTGCACCCACCAAAAGCTATACAATTGCCCGGCCA 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 539 CTAGGTTTCCTAGGGCGTACTATAGGTGCACCCACCAAAAGCTATACAATTGCCCAGCCA 598
Query 626 AGAAACAAGTCCAACGCCTTAACGACGATCCCTTCACCTTCCGGGTCACATACCGTGGCT 685
||||||||||||||||||| ||||||||||| ||||||||||| || |||||||||||||
Sbjct 599 AGAAACAAGTCCAACGCCTCAACGACGATCCTTTCACCTTCCGAGTTACATACCGTGGCT 658
Query 686 CACACACTTGCTACA---ACTCAACCGCTCCAACCGCATCCTCTGCCACTCCAAGTACCA 742
||||||||||| ||| ||||||||||||||||||||||||||||| |||| | ||
Sbjct 659 CACACACTTGCCACATCTACTCAACCGCTCCAACCGCATCCTCTGCCGCTCCCA---CCG 715
Query 743 TTCCAATCTCATCCGTCACCACTGGTCATTCTGTTGACTACGGTCTTGCTGTCGTTGACA 802
||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 716 CTCCAATCCCATCCGTCACCACAGGTCATTCCGTTGACTACGGTCTTGCTGTCGTTGACA 775
Query 803 TGGCTGATGTTATGTTTGGTAGCGGCGGGGTCGGAACCAACATGGATTTCATATTTCCTA 862
||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 776 TGGCTGATGCTATGTTTGGTAGCGGCGGGGTCGGTACCAACATGGATTTCATATTTTCTA 835
Query 863 AAAACGATCCATCTTAAC 880
|||||||||||| |||
Sbjct 836 TCAACGATCCATCTCAAC 853
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32595094035
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5