BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40745.1
Length=744
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483132 jgi|Araly1|483132|fgenesh2_kg.4__2192__AT2G40745.1 1024 0.0
> Ahg483132 jgi|Araly1|483132|fgenesh2_kg.4__2192__AT2G40745.1
Length=732
Score = 1024 bits (554), Expect = 0.0
Identities = 677/736 (92%), Gaps = 9/736 (1%)
Strand=Plus/Plus
Query 12 attcaaacaacatttatttctcattgtttagcatctattttttcttgtttatAAACAAAG 71
|||||||||||||||||| |||||| ||||||||| ||||||| ||||||||| ||||
Sbjct 1 ATTCAAACAACATTTATTACTCATTATTTAGCATC-CGTTTTTCTCGTTTATAAATAAAG 59
Query 72 AATTACAACATGAAACACGTGCATTTTAACATAAATATATTTAG-AAAATGTCGAATTTC 130
|||||| |||||||||||||||||||||||||| |||||| | | |||||||||||||||
Sbjct 60 AATTACGACATGAAACACGTGCATTTTAACATACATATATATGGAAAAATGTCGAATTTC 119
Query 131 GTGAATTAGTGAGAG---AAAAAACCACAAAAACAATTGTTGAGGTGTAGT-TAAGTTGA 186
||||||||||||||| |||||| ||||||| ||| | ||||||||| | ||||||||
Sbjct 120 GTGAATTAGTGAGAGAAAAAAAAAACACAAAATCAAATACTGAGGTGTA-TATAAGTTGA 178
Query 187 CATATCAATCACACATATTATTCTACTCAGATTTATTATTTGAAAAGAAGAAAAATGCGA 246
| |||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 179 TACATCAATCACAAATATTATTCTACTCAAATTTCTTATTTGAAAAGAAGAAAAATGCGA 238
Query 247 GGGAAAAAGATAATAATCACAGGTGAAGATGTGAAGCTACTTGTGAATATCTTTGGTACA 306
|||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 239 GGGAAAAAAATAATAATCACAGGTGAAGATGTGAAGCTACTTGTGAAAATCATTGGTACA 298
Query 307 ATCGGAGTCACCAATGGTCGCCCATATCAATACAAGGTTGAAGCTTGGACAAATGAAAAC 366
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 299 ATCGGAGTCACCAATGGTCGCCCATATCAATACAAGGTTGAAGCATGGACAAATGAAAAC 358
Query 367 GAGAAACATGAAACAAAGGTTGTAGCAACCGAAGGAGATCCTGAGTTTGATGAAGAATTA 426
|| ||| ||||||||||||||||| |||||||||||||||| ||||| |||||||| ||
Sbjct 359 GAAAAATATGAAACAAAGGTTGTACCAACCGAAGGAGATCCCGAGTTCGATGAAGAGCTA 418
Query 427 CAACTTTTTCAAGATCAGAATTTTCCCGTAGAATCTTTATATGTAGATGTTTTCAAAACG 486
||| ||||||||||| |||||||||| | |||||||||||||||||||||||||||||
Sbjct 419 CAAATTTTTCAAGATAAGAATTTTCCAGCCCAATCTTTATATGTAGATGTTTTCAAAACG 478
Query 487 AATTCAACTGGTACCTATTTCGTTGGGAGAAGAGTCACATTGTTGCCAACGGTTAAAGGG 546
||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 479 AATTCAATTGGCACCTATTTCGTTGGGAGGGGAGTCACATTGTTGCCAACGGTTAAAGGG 538
Query 547 GTTGATTTTTACCGTGAAGTTAACCTCTCTGGTCCTGAGGAAACCGGATTTCTTCAATTG 606
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 539 GTTGATTTTTACCGTGAAGTTGAGCTCTCTGGTCCTGAGGAAACCGGATTTCTTCAATTG 598
Query 607 TCACTTACTCTCATGGAATTTGAGATACTTGGTTATGTTCCTTCATGATTTATCATCTGT 666
||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 599 TCACTTAATCTCATGGAATTCGAGATACTTGGTTATGTTTCTTCATGATTTATCATCTAC 658
Query 667 ATGTGGTTGTGAATTCTTAATTTGATATTGTTATGAATAATGAATAATGCATACTGATAA 726
|||||||||| | || ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 659 ATGTGGTTGT-ATTT-TTAATTTGATATTGTTATGAATAATGAATAATGCATATTGATAA 716
Query 727 TAAGTTATCATAAATT 742
||||||||||||||||
Sbjct 717 TAAGTTATCATAAATT 732
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27410377323
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5