BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40750.1
Length=1337
Score E
Sequences producing significant alignments: (Bits) Value
Ahg901655 jgi|Araly1|901655|Al_scaffold_0004_2305 1604 0.0
Ahg321761 jgi|Araly1|321761|fgenesh1_pm.C_scaffold_4001818 1604 0.0
Ahg486080 jgi|Araly1|486080|fgenesh2_kg.5__2072__AT3G56400.1 167 2e-40
> Ahg901655 jgi|Araly1|901655|Al_scaffold_0004_2305
Length=1014
Score = 1604 bits (868), Expect = 0.0
Identities = 968/1017 (95%), Gaps = 4/1017 (0%)
Strand=Plus/Plus
Query 115 ATGGATTCGAATAGTAACAACACGAAATCCATAAAGAGAAAAGTTGTCGACCAACTTGTC 174
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATTCAAATAGTAACAACACCAAATCCATAAAGAGAAAAGTTGTCGACCAACTTGTC 60
Query 175 GAAGGCTATGAATTCGCTACTCAGCTTCAGCTTCTCCTTTCTCATCAACACTCTAACCAG 234
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 61 GAAGGCTATGAATTCGCTACTCAGCTTCAGCTTCTCCTCTCTCATCAACACTCTAAACAG 120
Query 235 TACCACATCGATGAGACCCGTCTTGTTTCCGGGTCGGGTTCAGTTTCCGGTGGTCCAGAT 294
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 121 TACCACATCGATCAGACCCGTCTTGTTTCCGGGTCGGGTTCAGTTTCCGGTGTTCCAGAT 180
Query 295 CCCGTTGATGAGCTCATGTCTAAGATCTTGGGATCTTTCCATAAAACTATATCGGTTCTT 354
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 181 CCCGTTGATGAGCTCATGTCTAAGATCTTGGGATCTTTCCATAAAACTATTTCCGTTCTT 240
Query 355 GATTCTTTTGATCCCGTCGCCGTCTCTGTCCCCATCGCCGTCGAGGGTTCATGGAATGCT 414
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 241 GATTCTTTTGATCCCGTCACCGTCTCTGTCCCCATCTCCGTCGAGGGTTCATGGAATGCT 300
Query 415 TCATGTGGGGATGATTCGGCGACTCCGGTGAGTTGCAACGGTGGAGATTCCGGTGAGAGT 474
|||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 301 TCATGTGGAGATGATTCGGCGACTCCGGCGAGTTGCAACGGTGGAGATTCCGGTGATAGT 360
Query 475 AAGAAGAAGAGATTAGGGGTTGGTAAGGGTAAAAGAGGATGCTACACTAGAAAGACGAGA 534
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 361 AAGAAGAAGAGATTAGGAGTTGGTAAGGGTAAAAGAGGATGCTACACTAGAAAGAAGAGA 420
Query 535 TCACATACAAGGATCGTGGAAGCTAAAAGTTCTGAAGACAGATATGCTTGGAGGAAATAT 594
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 421 TCACATACAAGGATCGTGGAAGCTAGAAGTTCTGAAGATAGATATGCTTGGAGGAAATAT 480
Query 595 GGACAAAAGGAGATTCTTAATACCACATTCCCAAGAAGTTACTTTAGATGCACACACAAG 654
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 481 GGACAAAAGGAGATTCTTAATACCACATTCCCAAGAAGTTATTTTAGATGCACACACAAG 540
Query 655 CCAACGCAAGGATGCAAAGCAACAAAGCAAGTTCAGAAACAGGATCAAGATTCTGAGATG 714
|||||||||||||||||||||||||||||||| |||||| |||| ||||| ||||||||
Sbjct 541 CCAACGCAAGGATGCAAAGCAACAAAGCAAGTACAGAAAAAGGAGCAAGACCCTGAGATG 600
Query 715 TTCCAAATCACATACATTGGCTACCACACATGCACTGCCAATGACCAAACGCACGCGAAG 774
||||||||||||||||||||||| |||||||||||||||| ||||||||| ||| |||||
Sbjct 601 TTCCAAATCACATACATTGGCTATCACACATGCACTGCCACTGACCAAACACACACGAAG 660
Query 775 ACCGAGCCTTTTGATCAAGAAATCATTATGGATTCGGAAAAGACATTGGCTGCTAGCACT 834
||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 661 ACCGAGCCTTTCGATCAAGAAATCATTATGGATTTGGAAAAGACATTGGCTGCAAGCACT 720
Query 835 GCTCAGAACCATGTCAATGCTATGGTGCAAGAGCAAGAGAACAACACCAGCAGTGTGACA 894
| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
Sbjct 721 GTTCAGAACCATGTCAATGCTATGGTGCAAGAGCAAGAGAACAACATCAGTAGTGTGATA 780
Query 895 GCAATAGACGCAGGCATGGTTAAGGAGGAACAAAATAACAATGGTGATCAGAGTAAAGAT 954
|| ||| |||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 781 GCTGTAGGCGCAGGCATGGTTAAGGAGGAAGAGAATAACAATGGTGATCAGAGTAAAGAT 840
Query 955 TATTATGAGGGCTCTTCGACAGGTGAGGACTTGTCATTGGTTTGGCAAGAGACGATGATG 1014
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 841 TATTGTGAGGGCTCTTCGACAGGTGAGGACTTGTCGTTGGTTTGGCAAGAGACGATGATG 900
Query 1015 TTTGATGATCATCAAAATCACTACTATTGTGGTGAAACCAGTACTACTTCTCATCAATTT 1074
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 901 TTTGATGATCATCAAAATAACTACTATTGTGGTGAAATCAGTACTACTTCTCATCAATTT 960
Query 1075 GGTTTCATCGACAACGATGATCAGTTTTCCTCCTTCTTCGACTCATATTGTGC-TGA 1130
|||||||||||||||||| ||| |||||||||| ||||||||||||||||| |||
Sbjct 961 GGTTTCATCGACAACGAT---CAGCTTTCCTCCTTATTCGACTCATATTGTGCCTGA 1014
> Ahg321761 jgi|Araly1|321761|fgenesh1_pm.C_scaffold_4001818
Length=1014
Score = 1604 bits (868), Expect = 0.0
Identities = 968/1017 (95%), Gaps = 4/1017 (0%)
Strand=Plus/Plus
Query 115 ATGGATTCGAATAGTAACAACACGAAATCCATAAAGAGAAAAGTTGTCGACCAACTTGTC 174
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATTCAAATAGTAACAACACCAAATCCATAAAGAGAAAAGTTGTCGACCAACTTGTC 60
Query 175 GAAGGCTATGAATTCGCTACTCAGCTTCAGCTTCTCCTTTCTCATCAACACTCTAACCAG 234
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 61 GAAGGCTATGAATTCGCTACTCAGCTTCAGCTTCTCCTCTCTCATCAACACTCTAAACAG 120
Query 235 TACCACATCGATGAGACCCGTCTTGTTTCCGGGTCGGGTTCAGTTTCCGGTGGTCCAGAT 294
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 121 TACCACATCGATCAGACCCGTCTTGTTTCCGGGTCGGGTTCAGTTTCCGGTGTTCCAGAT 180
Query 295 CCCGTTGATGAGCTCATGTCTAAGATCTTGGGATCTTTCCATAAAACTATATCGGTTCTT 354
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 181 CCCGTTGATGAGCTCATGTCTAAGATCTTGGGATCTTTCCATAAAACTATTTCCGTTCTT 240
Query 355 GATTCTTTTGATCCCGTCGCCGTCTCTGTCCCCATCGCCGTCGAGGGTTCATGGAATGCT 414
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 241 GATTCTTTTGATCCCGTCACCGTCTCTGTCCCCATCTCCGTCGAGGGTTCATGGAATGCT 300
Query 415 TCATGTGGGGATGATTCGGCGACTCCGGTGAGTTGCAACGGTGGAGATTCCGGTGAGAGT 474
|||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 301 TCATGTGGAGATGATTCGGCGACTCCGGCGAGTTGCAACGGTGGAGATTCCGGTGATAGT 360
Query 475 AAGAAGAAGAGATTAGGGGTTGGTAAGGGTAAAAGAGGATGCTACACTAGAAAGACGAGA 534
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 361 AAGAAGAAGAGATTAGGAGTTGGTAAGGGTAAAAGAGGATGCTACACTAGAAAGAAGAGA 420
Query 535 TCACATACAAGGATCGTGGAAGCTAAAAGTTCTGAAGACAGATATGCTTGGAGGAAATAT 594
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 421 TCACATACAAGGATCGTGGAAGCTAGAAGTTCTGAAGATAGATATGCTTGGAGGAAATAT 480
Query 595 GGACAAAAGGAGATTCTTAATACCACATTCCCAAGAAGTTACTTTAGATGCACACACAAG 654
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 481 GGACAAAAGGAGATTCTTAATACCACATTCCCAAGAAGTTATTTTAGATGCACACACAAG 540
Query 655 CCAACGCAAGGATGCAAAGCAACAAAGCAAGTTCAGAAACAGGATCAAGATTCTGAGATG 714
|||||||||||||||||||||||||||||||| |||||| |||| ||||| ||||||||
Sbjct 541 CCAACGCAAGGATGCAAAGCAACAAAGCAAGTACAGAAAAAGGAGCAAGACCCTGAGATG 600
Query 715 TTCCAAATCACATACATTGGCTACCACACATGCACTGCCAATGACCAAACGCACGCGAAG 774
||||||||||||||||||||||| |||||||||||||||| ||||||||| ||| |||||
Sbjct 601 TTCCAAATCACATACATTGGCTATCACACATGCACTGCCACTGACCAAACACACACGAAG 660
Query 775 ACCGAGCCTTTTGATCAAGAAATCATTATGGATTCGGAAAAGACATTGGCTGCTAGCACT 834
||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 661 ACCGAGCCTTTCGATCAAGAAATCATTATGGATTTGGAAAAGACATTGGCTGCAAGCACT 720
Query 835 GCTCAGAACCATGTCAATGCTATGGTGCAAGAGCAAGAGAACAACACCAGCAGTGTGACA 894
| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
Sbjct 721 GTTCAGAACCATGTCAATGCTATGGTGCAAGAGCAAGAGAACAACATCAGTAGTGTGATA 780
Query 895 GCAATAGACGCAGGCATGGTTAAGGAGGAACAAAATAACAATGGTGATCAGAGTAAAGAT 954
|| ||| |||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 781 GCTGTAGGCGCAGGCATGGTTAAGGAGGAAGAGAATAACAATGGTGATCAGAGTAAAGAT 840
Query 955 TATTATGAGGGCTCTTCGACAGGTGAGGACTTGTCATTGGTTTGGCAAGAGACGATGATG 1014
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TATTGTGAGGTCTCTTCGACAGGTGAGGACTTGTCATTGGTTTGGCAAGAGACGATGATG 900
Query 1015 TTTGATGATCATCAAAATCACTACTATTGTGGTGAAACCAGTACTACTTCTCATCAATTT 1074
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 901 TTTGATGATCATCAAAATAACTACTATTGTGGTGAAATCAGTACTACTTCTCATCAATTT 960
Query 1075 GGTTTCATCGACAACGATGATCAGTTTTCCTCCTTCTTCGACTCATATTGTGC-TGA 1130
|||||||||||||||||| ||| |||||||||| ||||||||||||||||| |||
Sbjct 961 GGTTTCATCGACAACGAT---CAGCTTTCCTCCTTATTCGACTCATATTGTGCCTGA 1014
> Ahg486080 jgi|Araly1|486080|fgenesh2_kg.5__2072__AT3G56400.1
Length=1073
Score = 167 bits (90), Expect = 2e-40
Identities = 200/252 (79%), Gaps = 12/252 (5%)
Strand=Plus/Plus
Query 498 TAAGGGTAAAAGAGGATGCTACACTAGAAAGACGAGATCACATACAAGGATCGT--GGAA 555
||||||||||||||||||||||| ||||||| ||||| | || ||| | | |||
Sbjct 361 TAAGGGTAAAAGAGGATGCTACAAAAGAAAGAAAAGATCGGAGACGTGGA-C-TAAAGAA 418
Query 556 GCTAAAAGTTC-TGAAGACAG-ATATGCTTGGAGGAAATATGGACAAAAGGAGATTCTTA 613
| | | | | ||| ||| | || | |||||||||||||||||||||||||||||||||
Sbjct 419 TCGACTA-TACTTGAGGAC-GAATTTTCTTGGAGGAAATATGGACAAAAGGAGATTCTTA 476
Query 614 ATACCACATTCCCAAGAAGTTACTTTAGATGCACACACAAGC-CAACGCAAGGATGCAAA 672
|| ||| ||||||||| |||||||||||||||||||||||| || | ||||| |||||
Sbjct 477 ATGCCAAATTCCCAAGGAGTTACTTTAGATGCACACACAAGTACA-CTCAAGGGTGCAAG 535
Query 673 GCAACAAAGCAAGTTCAGAAACAGGATCAAGATTCTGAGATGTTCCAA-ATCACATACAT 731
|||||||||||||| ||||| ||| | || | |||||||| | |||||||||||
Sbjct 536 GCAACAAAGCAAGTCCAGAAGGTGGAGCTCGAACCCAAGATGTTC-AGTATCACATACAT 594
Query 732 TGGCTACCACAC 743
|| |||||||
Sbjct 595 AGGAAACCACAC 606
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50017267104
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5