BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G40760.1 Length=1526 Score E Sequences producing significant alignments: (Bits) Value Ahg483133 jgi|Araly1|483133|fgenesh2_kg.4__2193__AT2G40760.1 2241 0.0 Ahg934442 jgi|Araly1|934442|scaffold_402430.1 859 0.0 Ahg934441 jgi|Araly1|934441|scaffold_402429.1 512 3e-144 > Ahg483133 jgi|Araly1|483133|fgenesh2_kg.4__2193__AT2G40760.1 Length=1496 Score = 2241 bits (1213), Expect = 0.0 Identities = 1425/1523 (94%), Gaps = 31/1523 (2%) Strand=Plus/Plus Query 1 CAATGCTACGGTTTTACCACTGGAGATTTCCGCCGTCCCTCGCCGTCGTTAGAATGCTCT 60 ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1 CAATGCTACGGTTTTGCCACTGGAGATTTCCGCCGTCCCTCGCCGTCGCTAGAATGCTCT 60 Query 61 CATCACCACCCCCTCCTCACTCACACTCTCCATTCTCCGGCGGCGGC-GTGAATTCGAAC 119 |||| ||||| || | |||||||||||||||||||||||| |||| | || ||||||| | Sbjct 61 CATCGCCACCACCGCTTCACTCACACTCTCCATTCTCCGGTGGCGTCGGT-AATTCGAGC 119 Query 120 TCAGTCGGTGGAAACTCCAAACCCGAGTTACAATTCCCTCAATCCCAACCCCATAAACTC 179 ||| ||||||||||||||||||||||||||| ||||||||||||||||||||| || ||| Sbjct 120 TCAATCGGTGGAAACTCCAAACCCGAGTTACTATTCCCTCAATCCCAACCCCAGAATCTC 179 Query 180 TCTTCCTCTCCTTCCTCTTCTCTGAAATCCACGGTGGCTTGTTCAAACGCCGGAGCTATA 239 |||||||| ||||| || ||||||||||||||||| |||||||| ||||||||||||||| Sbjct 180 TCTTCCTCCCCTTCTTCCTCTCTGAAATCCACGGTTGCTTGTTCGAACGCCGGAGCTATA 239 Query 240 CGGAGAAGCATGGCTACTGTTTCTCAGGCATTCTCAGAGAGAACAGAGTCTATTGATTCG 299 |||||||||||| |||||||||||||| |||||||||| ||||||||||||| |||||| Sbjct 240 CGGAGAAGCATGACTACTGTTTCTCAGTCATTCTCAGATAGAACAGAGTCTAGCGATTCG 299 Query 300 GATTTAGGCTCGCTCGTTGTAGTTTCATTCTACAAATTCGCTGATTTTCCTGAGCATGCT 359 |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 300 GATTTAGGCTCGCTCGTTGTGGTTTCATTCTACAAATTCGCTGATTTTCCTGACCATGCT 359 Query 360 GATTTCAGGAAG-CCTCTCAAGGATCTCTGCGAAAAATTGCGTGTTTCAGGTGGAATCAT 418 |||||||||||| ||| | ||||||||||||||| ||||||||||||||||||||||||| Sbjct 360 GATTTCAGGAAGCCCT-TGAAGGATCTCTGCGAAGAATTGCGTGTTTCAGGTGGAATCAT 418 Query 419 TCTTGCACCAGAAGGGATAAATGGAAGTATCTGTGGGATTCGTGAATCAGTGGAGGA-AG 477 |||||||||||||||||| ||||||||||||||||||||||||||||||||||| || || Sbjct 419 TCTTGCACCAGAAGGGATCAATGGAAGTATCTGTGGGATTCGTGAATCAGTGGA-GAGAG 477 Query 478 TGTTGGCATTTATACAGAGAGATGTCCGGTTAAATGGTTTGAGGCAAGTGGAGACACCTG 537 ||||||||||||||||||| ||| |||| || |||||||||||||||||||||||||||| Sbjct 478 TGTTGGCATTTATACAGAGTGATATCCGATTGAATGGTTTGAGGCAAGTGGAGACACCTG 537 Query 538 TGAGTCCTGAGCAAGAAGCAATTCACCATGGACATAGTAGTAGCTCTCCTCTTGCAGCTG 597 |||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||| Sbjct 538 TGAGTCCTGAACAAGAAGCAATCCACCATGGACATAGCAGTAGCTCTCCTCTTGCAGCTG 597 Query 598 GTGAAGATGCTCCATTTAGATGGGATCATGTTAGGGTCAAACTTAAGAAAGAGATTGTTA 657 ||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 598 GTGAAGATGCTCCCTTTAGATGGGATCACGTTAGGGTCAAACTCAAGAAAGAGATTGTTA 657 Query 658 CGCTTGGAATTCCTAGTGTCTCGCCAATTGAAAGAGTTGGAACATATGTGAGTCCCGAAG 717 |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 658 CGCTTGGAATGCCTAGTGTCTCGCCAATTGAAAGAGTTGGAACATATGTGAGCCCCGAAG 717 Query 718 AATGGAACGAACTGATCAGTGATCCAGAAACTGTAGTGATTGATGTGCGTAATACCTATG 777 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 718 AATGGAACGAACTGATCAGTGATCCAGAAACTGTAGTGATCGATGTGCGTAATACCTATG 777 Query 778 AGACTAGAATTGGGAAGTTTAAAGGAGCTGTGGATCCATGTACCACAGCTTTCAGAAATT 837 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 778 AGACTAGAATTGGGAAGTTTAAAGGAGCTGTGGATCCATGTACCACAGCTTTCAGAAATT 837 Query 838 TCCCATCTTGGGTGGAGAATCAATTTGCATTGAAGCAAGAAGGCAATGAAACGCAAGCAA 897 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 838 TCCCAACTTGGGTGGAGAATCAATTTGCATTGAAGCAAGAAGGCAATGAAACGCAAGCAA 897 Query 898 AGGTGGAGAAAGAGGATTTTTCTGAAATCACCCATAAAGAAGACAAAGCTGAAAAACCGA 957 | |||||| |||| || | |||||||| | | | | ||||||||||| Sbjct 898 ATGTGGAGCAAGAAGAATGTTCTGAAA-C-C--A---------C-----TGAAAAACCGA 939 Query 958 AGACGCTGCCACGAATTGCTATGTATTGCACTGGAGGAATCAGGTGTGAGAAAGCTTCAA 1017 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 940 AGACGCTGCCACGAATTGCTATGTATTGCACTGGAGGAATCAGGTGTGAGAAAGCTTCAA 999 Query 1018 GCCTCCTTCTTAGCCAAGGTTTCGAAGAGGTATATCATCTGAAAGGTGGGATATTAAAGT 1077 || | |||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1000 GCTTTCTTCTTAGCCAAGGTTTCGAAGAGGTGTATCATCTGAAAGGTGGGATATTAAAGT 1059 Query 1078 ACCTTGAAGAAGTCCCTAAAACCGAGAGCTTATGGGAAGGGGAATGCTTTGTGTTCGACA 1137 |||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||| Sbjct 1060 ACCTTGAAGAAGTCCCTAAAACAGAGAGCTTGTGGGAAGGCGAATGCTTTGTGTTCGACA 1119 Query 1138 AACGTGTATCTGTGGAACATGGTCTAGCTCAAGGAACACATAAACTCTGCTATGGATGCA 1197 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1120 AGCGTGTATCTGTGGAACATGGTCTAGCTCAAGGAACACATAAACTCTGCTATGGATGCA 1179 Query 1198 AGCAACCTATAAGTGATGAAGACATGGAAGCTCCAGAGTACGAGTATGGAGTTTCTTGCC 1257 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 1180 AGCAACCTATAAGTGATGAAGACATGGAAGCTCCAGAGTATGAGTATGGAGTTTCTTGTC 1239 Query 1258 CTTACTGTTACTCCAAGAAATCAGAAGAGGAGAAAGAAAGGGCAAGAGCAAGGCAGACAC 1317 |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1240 CTTACTGTTACTCCAAAAAATCCGAAGAGGAGAAAGAAAGGGCAAGAGCAAGGCAGACAC 1299 Query 1318 AGTTTGAGGAATGGGGTGTAATTGGTGGTCCGGACAAAGGTCGTCGACCCGCCACTAAAC 1377 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1300 AGTTTGAGGAATGGGGTGTAATTGGTGGTCCGGACAAAGGTCGTCGACCCGCCACTAAAC 1359 Query 1378 CTGATAGTCCAAGGAAGAAGATCAATGCAAAGCTTGGTTCTTCAATATAGAATGATGTTG 1437 | ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| Sbjct 1360 CAGATAGTCCAAGGAAGAAGAGCAATACAAAGCTTGGTTCTTCAATATAGAATGATGTTG 1419 Query 1438 TTTTGTTCTTCTTCTTGAAATCATTTGCATTGTTACATACTTACATTAAAGAGTTTAAAC 1497 ||||||||||||||||||||||| ||| | | ||| |||||||||||||||||||| Sbjct 1420 TTTTGTTCTTCTTCTTGAAATCAAATGC-T-G---CATTGTTACATTAAAGAGTTTAAAC 1474 Query 1498 GCTAATCAATGA-GGCAATGATC 1519 || ||||| | | |||||||||| Sbjct 1475 GCCAATCA-TCAAGGCAATGATC 1496 > Ahg934442 jgi|Araly1|934442|scaffold_402430.1 Length=727 Score = 859 bits (465), Expect = 0.0 Identities = 555/595 (93%), Gaps = 20/595 (3%) Strand=Plus/Plus Query 399 CGTGTTTCAGGTGGAATCATTCTTGCACCAGAAGGGATAAATGGAAGTATCTGTGGGATT 458 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 129 CGTGTTTCAGGTGGAATCATTCTTGCACCAGAAGGGATCAATGGAAGTATCTGTGGGATT 188 Query 459 CGTGAATCAGTGGAGGA-AGTGTTGGCATTTATACAGAGAGATGTCCGGTTAAATGGTTT 517 |||||||||||||| || ||||||||||||||||||||| ||| |||| || |||||||| Sbjct 189 CGTGAATCAGTGGA-GAGAGTGTTGGCATTTATACAGAGTGATATCCGATTGAATGGTTT 247 Query 518 GAGGCAAGTGGAGACACCTGTGAGTCCTGAGCAAGAAGCAATTCACCATGGACATAGTAG 577 |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || Sbjct 248 GAGGCAAGTGGAGACACCTGTGAGTCCTGAACAAGAAGCAATCCACCATGGACATAGCAG 307 Query 578 TAGCTCTCCTCTTGCAGCTGGTGAAGATGCTCCATTTAGATGGGATCATGTTAGGGTCAA 637 ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 308 TAGCTCTCCTCTTGCAGCTGGTGAAGATGCTCCCTTTAGATGGGATCACGTTAGGGTCAA 367 Query 638 ACTTAAGAAAGAGATTGTTACGCTTGGAATTCCTAGTGTCTCGCCAATTGAAAGAGTTGG 697 ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 368 ACTCAAGAAAGAGATTGTTACGCTTGGAATGCCTAGTGTCTCGCCAATTGAAAGAGTTGG 427 Query 698 AACATATGTGAGTCCCGAAGAATGGAACGAACTGATCAGTGATCCAGAAACTGTAGTGAT 757 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 428 AACATATGTGAGCCCCGAAGAATGGAACGAACTGATCAGTGATCCAGAAACTGTAGTGAT 487 Query 758 TGATGTGCGTAATACCTATGAGACTAGAATTGGGAAGTTTAAAGGAGCTGTGGATCCATG 817 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 488 CGATGTGCGTAATACCTATGAGACTAGAATTGGGAAGTTTAAAGGAGCTGTGGATCCATG 547 Query 818 TACCACAGCTTTCAGAAATTTCCCATCTTGGGTGGAGAATCAATTTGCATTGAAGCAAGA 877 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 548 TACCACAGCTTTCAGAAATTTCCCAACTTGGGTGGAGAATCAATTTGCATTGAAGCAAGA 607 Query 878 AGGCAATGAAACGCAAGCAAAGGTGGAGAAAGAGGATTTTTCTGAAATCACCCATAAAGA 937 ||||||||||||||||||||| |||||| |||| || | |||||||| | | | Sbjct 608 AGGCAATGAAACGCAAGCAAATGTGGAGCAAGAAGAATGTTCTGAAA-C-C--A------ 657 Query 938 AGACAAAGCTGAAAAACCGAAGACGCTGCCACGAATTGCTATGTATTGCACTGGA 992 | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 658 ---C-----TGAAAAACCGAAGACGCTGCCACGAATTGCTATGTATTGCACTGGA 704 Score = 161 bits (87), Expect = 1e-38 Identities = 113/125 (90%), Gaps = 3/125 (2%) Strand=Plus/Plus Query 245 AAGCATGGCTACTGTTTCTCAGGCATTCTCAGAGAGAACAGAGTCTATTGATTCGGATTT 304 ||||||| |||||||||||||| |||||||||| ||||||||||||| ||||| ||||| Sbjct 17 AAGCATGACTACTGTTTCTCAGTCATTCTCAGATAGAACAGAGTCTAGCGATTCAGATTT 76 Query 305 AGGCTCGCTCGTTGTAGTTTCATTCTACAAATTCGCTGATTTTCCTGAGCAT-GCTGATT 363 |||||||||||||||||||||||||||||||||| |||| |||||||| ||| | || || Sbjct 77 AGGCTCGCTCGTTGTAGTTTCATTCTACAAATTCACTGACTTTCCTGACCATCG-TG-TT 134 Query 364 TCAGG 368 ||||| Sbjct 135 TCAGG 139 > Ahg934441 jgi|Araly1|934441|scaffold_402429.1 Length=406 Score = 512 bits (277), Expect = 3e-144 Identities = 334/362 (92%), Gaps = 2/362 (1%) Strand=Plus/Plus Query 1 CAATGCTACGGTTTTACCACTGGAGATTTCCGCCGTCCCTCGCCGTCGTTAGAATGCTCT 60 ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct 22 CAATGCTACGGTTTTGCCACTGGAGATTTCCGCCGTCCCTCGCCGTCGCTAGAATGCTCT 81 Query 61 CATCACCACCCCCTCCTCACTCACACTCTCCATTCTCCGGCGGCGGCG-TGAATTCGAAC 119 |||| ||||| || | |||||||||||||||||||||||| |||| || | ||||||| | Sbjct 82 CATCGCCACCACCGCTTCACTCACACTCTCCATTCTCCGGTGGCGTCGGT-AATTCGAGC 140 Query 120 TCAGTCGGTGGAAACTCCAAACCCGAGTTACAATTCCCTCAATCCCAACCCCATAAACTC 179 ||| ||||||||||||||||||||||||||| ||||||||||||||||||||| || ||| Sbjct 141 TCAATCGGTGGAAACTCCAAACCCGAGTTACTATTCCCTCAATCCCAACCCCAGAATCTC 200 Query 180 TCTTCCTCTCCTTCCTCTTCTCTGAAATCCACGGTGGCTTGTTCAAACGCCGGAGCTATA 239 |||||||| ||||| || ||||||||||||||||| |||||||| ||||||||||||||| Sbjct 201 TCTTCCTCCCCTTCTTCCTCTCTGAAATCCACGGTTGCTTGTTCGAACGCCGGAGCTATA 260 Query 240 CGGAGAAGCATGGCTACTGTTTCTCAGGCATTCTCAGAGAGAACAGAGTCTATTGATTCG 299 |||||||||||| |||||||||||||| |||||||||| ||||||||||||| |||||| Sbjct 261 CGGAGAAGCATGACTACTGTTTCTCAGTCATTCTCAGATAGAACAGAGTCTAGCGATTCG 320 Query 300 GATTTAGGCTCGCTCGTTGTAGTTTCATTCTACAAATTCGCTGATTTTCCTGAGCATGCT 359 |||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||| Sbjct 321 GATTTAGGCTCGCTCGTTGTGGTTTCATTCTACAAATTCGCTGACTTTCCTGACCATGCT 380 Query 360 GA 361 || Sbjct 381 GA 382 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57135367500 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5