BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40760.1
Length=1526
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483133 jgi|Araly1|483133|fgenesh2_kg.4__2193__AT2G40760.1 2241 0.0
Ahg934442 jgi|Araly1|934442|scaffold_402430.1 859 0.0
Ahg934441 jgi|Araly1|934441|scaffold_402429.1 512 3e-144
> Ahg483133 jgi|Araly1|483133|fgenesh2_kg.4__2193__AT2G40760.1
Length=1496
Score = 2241 bits (1213), Expect = 0.0
Identities = 1425/1523 (94%), Gaps = 31/1523 (2%)
Strand=Plus/Plus
Query 1 CAATGCTACGGTTTTACCACTGGAGATTTCCGCCGTCCCTCGCCGTCGTTAGAATGCTCT 60
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 CAATGCTACGGTTTTGCCACTGGAGATTTCCGCCGTCCCTCGCCGTCGCTAGAATGCTCT 60
Query 61 CATCACCACCCCCTCCTCACTCACACTCTCCATTCTCCGGCGGCGGC-GTGAATTCGAAC 119
|||| ||||| || | |||||||||||||||||||||||| |||| | || ||||||| |
Sbjct 61 CATCGCCACCACCGCTTCACTCACACTCTCCATTCTCCGGTGGCGTCGGT-AATTCGAGC 119
Query 120 TCAGTCGGTGGAAACTCCAAACCCGAGTTACAATTCCCTCAATCCCAACCCCATAAACTC 179
||| ||||||||||||||||||||||||||| ||||||||||||||||||||| || |||
Sbjct 120 TCAATCGGTGGAAACTCCAAACCCGAGTTACTATTCCCTCAATCCCAACCCCAGAATCTC 179
Query 180 TCTTCCTCTCCTTCCTCTTCTCTGAAATCCACGGTGGCTTGTTCAAACGCCGGAGCTATA 239
|||||||| ||||| || ||||||||||||||||| |||||||| |||||||||||||||
Sbjct 180 TCTTCCTCCCCTTCTTCCTCTCTGAAATCCACGGTTGCTTGTTCGAACGCCGGAGCTATA 239
Query 240 CGGAGAAGCATGGCTACTGTTTCTCAGGCATTCTCAGAGAGAACAGAGTCTATTGATTCG 299
|||||||||||| |||||||||||||| |||||||||| ||||||||||||| ||||||
Sbjct 240 CGGAGAAGCATGACTACTGTTTCTCAGTCATTCTCAGATAGAACAGAGTCTAGCGATTCG 299
Query 300 GATTTAGGCTCGCTCGTTGTAGTTTCATTCTACAAATTCGCTGATTTTCCTGAGCATGCT 359
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 300 GATTTAGGCTCGCTCGTTGTGGTTTCATTCTACAAATTCGCTGATTTTCCTGACCATGCT 359
Query 360 GATTTCAGGAAG-CCTCTCAAGGATCTCTGCGAAAAATTGCGTGTTTCAGGTGGAATCAT 418
|||||||||||| ||| | ||||||||||||||| |||||||||||||||||||||||||
Sbjct 360 GATTTCAGGAAGCCCT-TGAAGGATCTCTGCGAAGAATTGCGTGTTTCAGGTGGAATCAT 418
Query 419 TCTTGCACCAGAAGGGATAAATGGAAGTATCTGTGGGATTCGTGAATCAGTGGAGGA-AG 477
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||
Sbjct 419 TCTTGCACCAGAAGGGATCAATGGAAGTATCTGTGGGATTCGTGAATCAGTGGA-GAGAG 477
Query 478 TGTTGGCATTTATACAGAGAGATGTCCGGTTAAATGGTTTGAGGCAAGTGGAGACACCTG 537
||||||||||||||||||| ||| |||| || ||||||||||||||||||||||||||||
Sbjct 478 TGTTGGCATTTATACAGAGTGATATCCGATTGAATGGTTTGAGGCAAGTGGAGACACCTG 537
Query 538 TGAGTCCTGAGCAAGAAGCAATTCACCATGGACATAGTAGTAGCTCTCCTCTTGCAGCTG 597
|||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 538 TGAGTCCTGAACAAGAAGCAATCCACCATGGACATAGCAGTAGCTCTCCTCTTGCAGCTG 597
Query 598 GTGAAGATGCTCCATTTAGATGGGATCATGTTAGGGTCAAACTTAAGAAAGAGATTGTTA 657
||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 598 GTGAAGATGCTCCCTTTAGATGGGATCACGTTAGGGTCAAACTCAAGAAAGAGATTGTTA 657
Query 658 CGCTTGGAATTCCTAGTGTCTCGCCAATTGAAAGAGTTGGAACATATGTGAGTCCCGAAG 717
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 658 CGCTTGGAATGCCTAGTGTCTCGCCAATTGAAAGAGTTGGAACATATGTGAGCCCCGAAG 717
Query 718 AATGGAACGAACTGATCAGTGATCCAGAAACTGTAGTGATTGATGTGCGTAATACCTATG 777
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 718 AATGGAACGAACTGATCAGTGATCCAGAAACTGTAGTGATCGATGTGCGTAATACCTATG 777
Query 778 AGACTAGAATTGGGAAGTTTAAAGGAGCTGTGGATCCATGTACCACAGCTTTCAGAAATT 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 AGACTAGAATTGGGAAGTTTAAAGGAGCTGTGGATCCATGTACCACAGCTTTCAGAAATT 837
Query 838 TCCCATCTTGGGTGGAGAATCAATTTGCATTGAAGCAAGAAGGCAATGAAACGCAAGCAA 897
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 TCCCAACTTGGGTGGAGAATCAATTTGCATTGAAGCAAGAAGGCAATGAAACGCAAGCAA 897
Query 898 AGGTGGAGAAAGAGGATTTTTCTGAAATCACCCATAAAGAAGACAAAGCTGAAAAACCGA 957
| |||||| |||| || | |||||||| | | | | |||||||||||
Sbjct 898 ATGTGGAGCAAGAAGAATGTTCTGAAA-C-C--A---------C-----TGAAAAACCGA 939
Query 958 AGACGCTGCCACGAATTGCTATGTATTGCACTGGAGGAATCAGGTGTGAGAAAGCTTCAA 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 940 AGACGCTGCCACGAATTGCTATGTATTGCACTGGAGGAATCAGGTGTGAGAAAGCTTCAA 999
Query 1018 GCCTCCTTCTTAGCCAAGGTTTCGAAGAGGTATATCATCTGAAAGGTGGGATATTAAAGT 1077
|| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1000 GCTTTCTTCTTAGCCAAGGTTTCGAAGAGGTGTATCATCTGAAAGGTGGGATATTAAAGT 1059
Query 1078 ACCTTGAAGAAGTCCCTAAAACCGAGAGCTTATGGGAAGGGGAATGCTTTGTGTTCGACA 1137
|||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||
Sbjct 1060 ACCTTGAAGAAGTCCCTAAAACAGAGAGCTTGTGGGAAGGCGAATGCTTTGTGTTCGACA 1119
Query 1138 AACGTGTATCTGTGGAACATGGTCTAGCTCAAGGAACACATAAACTCTGCTATGGATGCA 1197
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1120 AGCGTGTATCTGTGGAACATGGTCTAGCTCAAGGAACACATAAACTCTGCTATGGATGCA 1179
Query 1198 AGCAACCTATAAGTGATGAAGACATGGAAGCTCCAGAGTACGAGTATGGAGTTTCTTGCC 1257
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1180 AGCAACCTATAAGTGATGAAGACATGGAAGCTCCAGAGTATGAGTATGGAGTTTCTTGTC 1239
Query 1258 CTTACTGTTACTCCAAGAAATCAGAAGAGGAGAAAGAAAGGGCAAGAGCAAGGCAGACAC 1317
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1240 CTTACTGTTACTCCAAAAAATCCGAAGAGGAGAAAGAAAGGGCAAGAGCAAGGCAGACAC 1299
Query 1318 AGTTTGAGGAATGGGGTGTAATTGGTGGTCCGGACAAAGGTCGTCGACCCGCCACTAAAC 1377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1300 AGTTTGAGGAATGGGGTGTAATTGGTGGTCCGGACAAAGGTCGTCGACCCGCCACTAAAC 1359
Query 1378 CTGATAGTCCAAGGAAGAAGATCAATGCAAAGCTTGGTTCTTCAATATAGAATGATGTTG 1437
| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1360 CAGATAGTCCAAGGAAGAAGAGCAATACAAAGCTTGGTTCTTCAATATAGAATGATGTTG 1419
Query 1438 TTTTGTTCTTCTTCTTGAAATCATTTGCATTGTTACATACTTACATTAAAGAGTTTAAAC 1497
||||||||||||||||||||||| ||| | | ||| ||||||||||||||||||||
Sbjct 1420 TTTTGTTCTTCTTCTTGAAATCAAATGC-T-G---CATTGTTACATTAAAGAGTTTAAAC 1474
Query 1498 GCTAATCAATGA-GGCAATGATC 1519
|| ||||| | | ||||||||||
Sbjct 1475 GCCAATCA-TCAAGGCAATGATC 1496
> Ahg934442 jgi|Araly1|934442|scaffold_402430.1
Length=727
Score = 859 bits (465), Expect = 0.0
Identities = 555/595 (93%), Gaps = 20/595 (3%)
Strand=Plus/Plus
Query 399 CGTGTTTCAGGTGGAATCATTCTTGCACCAGAAGGGATAAATGGAAGTATCTGTGGGATT 458
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 129 CGTGTTTCAGGTGGAATCATTCTTGCACCAGAAGGGATCAATGGAAGTATCTGTGGGATT 188
Query 459 CGTGAATCAGTGGAGGA-AGTGTTGGCATTTATACAGAGAGATGTCCGGTTAAATGGTTT 517
|||||||||||||| || ||||||||||||||||||||| ||| |||| || ||||||||
Sbjct 189 CGTGAATCAGTGGA-GAGAGTGTTGGCATTTATACAGAGTGATATCCGATTGAATGGTTT 247
Query 518 GAGGCAAGTGGAGACACCTGTGAGTCCTGAGCAAGAAGCAATTCACCATGGACATAGTAG 577
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct 248 GAGGCAAGTGGAGACACCTGTGAGTCCTGAACAAGAAGCAATCCACCATGGACATAGCAG 307
Query 578 TAGCTCTCCTCTTGCAGCTGGTGAAGATGCTCCATTTAGATGGGATCATGTTAGGGTCAA 637
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 308 TAGCTCTCCTCTTGCAGCTGGTGAAGATGCTCCCTTTAGATGGGATCACGTTAGGGTCAA 367
Query 638 ACTTAAGAAAGAGATTGTTACGCTTGGAATTCCTAGTGTCTCGCCAATTGAAAGAGTTGG 697
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 368 ACTCAAGAAAGAGATTGTTACGCTTGGAATGCCTAGTGTCTCGCCAATTGAAAGAGTTGG 427
Query 698 AACATATGTGAGTCCCGAAGAATGGAACGAACTGATCAGTGATCCAGAAACTGTAGTGAT 757
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 428 AACATATGTGAGCCCCGAAGAATGGAACGAACTGATCAGTGATCCAGAAACTGTAGTGAT 487
Query 758 TGATGTGCGTAATACCTATGAGACTAGAATTGGGAAGTTTAAAGGAGCTGTGGATCCATG 817
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 CGATGTGCGTAATACCTATGAGACTAGAATTGGGAAGTTTAAAGGAGCTGTGGATCCATG 547
Query 818 TACCACAGCTTTCAGAAATTTCCCATCTTGGGTGGAGAATCAATTTGCATTGAAGCAAGA 877
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 548 TACCACAGCTTTCAGAAATTTCCCAACTTGGGTGGAGAATCAATTTGCATTGAAGCAAGA 607
Query 878 AGGCAATGAAACGCAAGCAAAGGTGGAGAAAGAGGATTTTTCTGAAATCACCCATAAAGA 937
||||||||||||||||||||| |||||| |||| || | |||||||| | | |
Sbjct 608 AGGCAATGAAACGCAAGCAAATGTGGAGCAAGAAGAATGTTCTGAAA-C-C--A------ 657
Query 938 AGACAAAGCTGAAAAACCGAAGACGCTGCCACGAATTGCTATGTATTGCACTGGA 992
| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 ---C-----TGAAAAACCGAAGACGCTGCCACGAATTGCTATGTATTGCACTGGA 704
Score = 161 bits (87), Expect = 1e-38
Identities = 113/125 (90%), Gaps = 3/125 (2%)
Strand=Plus/Plus
Query 245 AAGCATGGCTACTGTTTCTCAGGCATTCTCAGAGAGAACAGAGTCTATTGATTCGGATTT 304
||||||| |||||||||||||| |||||||||| ||||||||||||| ||||| |||||
Sbjct 17 AAGCATGACTACTGTTTCTCAGTCATTCTCAGATAGAACAGAGTCTAGCGATTCAGATTT 76
Query 305 AGGCTCGCTCGTTGTAGTTTCATTCTACAAATTCGCTGATTTTCCTGAGCAT-GCTGATT 363
|||||||||||||||||||||||||||||||||| |||| |||||||| ||| | || ||
Sbjct 77 AGGCTCGCTCGTTGTAGTTTCATTCTACAAATTCACTGACTTTCCTGACCATCG-TG-TT 134
Query 364 TCAGG 368
|||||
Sbjct 135 TCAGG 139
> Ahg934441 jgi|Araly1|934441|scaffold_402429.1
Length=406
Score = 512 bits (277), Expect = 3e-144
Identities = 334/362 (92%), Gaps = 2/362 (1%)
Strand=Plus/Plus
Query 1 CAATGCTACGGTTTTACCACTGGAGATTTCCGCCGTCCCTCGCCGTCGTTAGAATGCTCT 60
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 22 CAATGCTACGGTTTTGCCACTGGAGATTTCCGCCGTCCCTCGCCGTCGCTAGAATGCTCT 81
Query 61 CATCACCACCCCCTCCTCACTCACACTCTCCATTCTCCGGCGGCGGCG-TGAATTCGAAC 119
|||| ||||| || | |||||||||||||||||||||||| |||| || | ||||||| |
Sbjct 82 CATCGCCACCACCGCTTCACTCACACTCTCCATTCTCCGGTGGCGTCGGT-AATTCGAGC 140
Query 120 TCAGTCGGTGGAAACTCCAAACCCGAGTTACAATTCCCTCAATCCCAACCCCATAAACTC 179
||| ||||||||||||||||||||||||||| ||||||||||||||||||||| || |||
Sbjct 141 TCAATCGGTGGAAACTCCAAACCCGAGTTACTATTCCCTCAATCCCAACCCCAGAATCTC 200
Query 180 TCTTCCTCTCCTTCCTCTTCTCTGAAATCCACGGTGGCTTGTTCAAACGCCGGAGCTATA 239
|||||||| ||||| || ||||||||||||||||| |||||||| |||||||||||||||
Sbjct 201 TCTTCCTCCCCTTCTTCCTCTCTGAAATCCACGGTTGCTTGTTCGAACGCCGGAGCTATA 260
Query 240 CGGAGAAGCATGGCTACTGTTTCTCAGGCATTCTCAGAGAGAACAGAGTCTATTGATTCG 299
|||||||||||| |||||||||||||| |||||||||| ||||||||||||| ||||||
Sbjct 261 CGGAGAAGCATGACTACTGTTTCTCAGTCATTCTCAGATAGAACAGAGTCTAGCGATTCG 320
Query 300 GATTTAGGCTCGCTCGTTGTAGTTTCATTCTACAAATTCGCTGATTTTCCTGAGCATGCT 359
|||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||
Sbjct 321 GATTTAGGCTCGCTCGTTGTGGTTTCATTCTACAAATTCGCTGACTTTCCTGACCATGCT 380
Query 360 GA 361
||
Sbjct 381 GA 382
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57135367500
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5