BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G40765.1

Length=521
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg483134 jgi|Araly1|483134|fgenesh2_kg.4__2194__AT2G40765.1         701    0.0  


> Ahg483134 jgi|Araly1|483134|fgenesh2_kg.4__2194__AT2G40765.1
Length=434

 Score =  701 bits (379),  Expect = 0.0
 Identities = 419/438 (96%), Gaps = 4/438 (1%)
 Strand=Plus/Plus

Query  1    AAAAATTCCGCAGAATTGATTATCGTCATTTCGTTAAGGATCTCTGTGGGGTTTGATCGA  60
            ||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  1    AAAAATTCCCCAAAATTGATTATCGTCATTTCGTTAAGGATCTTTGTGGGGTTTGATCGA  60

Query  61   ATTTCATAGCGAAGgagagagtgagagagagaTTGAAGCAGTAATGGCAGGAACATCTGG  120
            |||| |||||||| | ||||  ||||||||||| |||||||| |||||||||||||||||
Sbjct  61   ATTTGATAGCGAA-G-GAGA--GAGAGAGAGATCGAAGCAGTGATGGCAGGAACATCTGG  116

Query  121  ATTGCTCAACGCAGTGAAGCCAAAGATCCAAACGATTGATATTCAGGCCGCCGCTGGATG  180
             ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  117  TTTGCTCAACGCCGTGAAGCCAAAGATCCAAACGATTGATATTCAGGCCGCCGCTGGATG  176

Query  181  GGGAATCGCCGCCGCAGCCGGTGCCATCTGGGTCGTCCAACCATTTGGTTGGATAAAGAA  240
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  177  GGGAATCGCCGCCGCAGCTGGTGCCATCTGGGTCGTCCAACCATTTGGTTGGATAAAGAA  236

Query  241  GACATTCATTGACCCACCCCCAACTGAAGAGAAGTGAGATATCACCAAGATTCAAGACTA  300
            |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct  237  GACATTCATTGACCCACCTCCAACTGAAGAGAAGTGAGACATCACCAAGATTCAAGACTA  296

Query  301  AGTGAAGAGTTTTCCAGTTTCTAAGTTTGTTACCGCCTCTTTGGCGTGGAGCTGAATAAA  360
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  297  AGTGAAGAGTTTTCCAGTTTCTAAGTTTGTTATCGCCTCTTTGGCGTGGAGCTGAATAAA  356

Query  361  TTTTGGTTCTTTTCTGGGGCTTTCTGGTTTCATTTCTTCAATGTAGTTGACTGATTTGTC  420
            ||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||
Sbjct  357  TTTTGGTTCTTTTCTGGGGTTTTGTGGTTTCATTTCTTCAATGTAGTAGACTGATTTGTC  416

Query  421  TTCTCAAATGTTATAACA  438
            ||||||||||||||||||
Sbjct  417  TTCTCAAATGTTATAACA  434



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18963327733


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5