BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40780.1
Length=1054
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483136 jgi|Araly1|483136|fgenesh2_kg.4__2196__AT2G40780.1 952 0.0
Ahg901661 jgi|Araly1|901661|Al_scaffold_0004_2311 828 0.0
Ahg932444 jgi|Araly1|932444|scaffold_400432.1 289 3e-77
> Ahg483136 jgi|Araly1|483136|fgenesh2_kg.4__2196__AT2G40780.1
Length=855
Score = 952 bits (515), Expect = 0.0
Identities = 562/584 (96%), Gaps = 6/584 (1%)
Strand=Plus/Plus
Query 331 TTGTGAAAGTTTCGGACT-TTTGGAATTTGAGGTAGAAGAGATGAACAGAGGAAGAAGGA 389
|||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||
Sbjct 276 TTGTGAAAGTTTCGGA-TATTTGGAATTTGA-GTAGAAGAGATGAACAGAGGAAGAAGGA 333
Query 390 ATCTGAAACAAGCGGCGTCGGACCAGGATTTCACGCTTGAGGAATGTCAGAGCATTGCCC 449
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 334 ATCTGAAACAAGCGGCGTCAGAGCAGGATTTCACGCTTGAGGAATGTCAGAGCATTGCCC 393
Query 450 AAGTCGTCTCTCTCAGAGGTTCCAATCAAATTGAGATAATGGATGCAAAAGGAGAGAACT 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 394 AAGTCGTCTCTCTCAGAGGTTCCAATCAAATTGAGATAATGGATGCAAAAGGAGAGAACT 453
Query 510 CATTAGCTTTGTTTCCAGCCAAGTTTCGTGAGAGCATGTGGATCAGACGAGGAAGCTTTG 569
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 454 CATTAGCTTTGTTTCCAGCTAAGTTTCGTGAGAGCATGTGGATCAGACGAGGAAGCTTTG 513
Query 570 TAGTGATTGACCATACAGGAAAGGAAAAGGCTCAAGAGTCTGGTAGCAAAGTTACATCTA 629
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 514 TAGTGATTGACCATACAGGAAAGGAAAAGGCTCAAGAGTCTGGTAGTAAAGTTACATCTA 573
Query 630 TTGTATGTAAAGTTCTATTCTTTGAGCAAGTCCGTCTTCTTCAAAAGTCTCCGGAATGGC 689
|||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 574 TTGTCTGTAAAGTTCTATTCTTTGAGCAAGTCCGTCTCCTTCAAAAGTCCCCGGAATGGC 633
Query 690 CAGAAATCTTCAAAGATACTAGACCGATTCCAGCTGAGAAAAGCTCACCCATTGAACAGC 749
| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 634 CGGAAATCTTCAAAGATACTAAACCGATTCCAGCTGATAAAAGCTCACCCATTGAACAGC 693
Query 750 ATGAAGATGACGGTGAAGTTGATTCGAGTGATGATGATGATGGTATGCCTCCATTGCAAG 809
||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||| |||
Sbjct 694 ATGAAGATGACGGTGAAATTGATTCGAGTGATGATGATGATGGCATGCCCCCATTGGAAG 753
Query 810 CAAACACAAACAGATTGAGACCGTTTGGGGTG-AAGTGTGATGCAGAAACTGATTCAGGG 868
|||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||
Sbjct 754 CAAACACAAACAGATTGAGACCGTTTGGGGTGCAA-TGTGATGCAGAAACAGATTCAGGG 812
Query 869 TCAGATTCCGATTCATAGAAACATCCGGTACATTTCTTTTCGCA 912
|||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 813 TCAGATTCCGATTCATAGAA-CATCCAGTACATTTCTTTTCGCA 855
Score = 335 bits (181), Expect = 4e-91
Identities = 258/291 (89%), Gaps = 21/291 (7%)
Strand=Plus/Plus
Query 6 ATTCCGAACCTGTGAAGTGAAAGAGAATTCGTTCAAAATTCAGAAATTGCGAATCGACGG 65
||||||||||||||||||||||||||||||| | || ||| |||||||||||
Sbjct 2 ATTCCGAACCTGTGAAGTGAAAGAGAATTCG------A-TC--AAA---CGAATCGACGG 49
Query 66 AGACT-ATGGAGGAGTGGAATTTC-AAGCGCCGGAGAAGATTAATAGACCGCCGCGTGAT 123
||| | || |||||||||| ||| ||||||||||||||||| |||||||||||||||
Sbjct 50 AGA-TGGTGAAGGAGTGGAA-TTCAAAGCGCCGGAGAAGATTCATAGACCGCCGCGTG-- 105
Query 124 ATAATAACGTATTGCCGGTTTATCTGCCAATTCGTTTGCACCGACGTGGCTTGAGAATGA 183
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 106 ATAATAACGAATTGCCGGTTTATCTGCCAATTCGTTTGCACCGACGTGGCTTGTGAATGA 165
Query 184 CAATAGTACCCTCAGCTTTTAAATA-AAATAACGAAACTACCTCCTCTTCTCTATTGGAA 242
||||| |||||||||| | |||||| ||||||||||| |||| |||||||||||||||||
Sbjct 166 CAATAATACCCTCAGCCTATAAATATAAATAACGAAATTACCCCCTCTTCTCTATTGGAA 225
Query 243 C-TATTCCGATTCCAGTAAAACGGCACACAACTGCAAAACCCTAATCTCAA 292
| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 226 CTTA-AGCGATTCCAGTAAAACGGCACACAACTGCAAAACCCTAATCTCAA 275
> Ahg901661 jgi|Araly1|901661|Al_scaffold_0004_2311
Length=519
Score = 828 bits (448), Expect = 0.0
Identities = 498/521 (96%), Gaps = 7/521 (1%)
Strand=Plus/Plus
Query 371 ATGAACAGAGGAAGAAGGAATCTGAAACAAGCGGCGTCGGACCAGGATTTCACGCTTGAG 430
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1 ATGAACAGAGGAAGAAGGAATCTGAAACAAGCGGCGTCAGAGCAGGATTTCACGCTTGAG 60
Query 431 GAATGTCAGAGCATTGCCCAAGTCGTCTCTCTCAGAGGTTCCAATCAAATTGAGATAATG 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAATGTCAGAGCATTGCCCAAGTCGTCTCTCTCAGAGGTTCCAATCAAATTGAGATAATG 120
Query 491 GATGCAAAAGGAGAGAACTCATTAGCTTTGTTTCCAGCCAAGTTTCGTGAGAGCATGTGG 550
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 GATGCAAAAGGAGAGAACTCATTAGCTTTGTTTCCAGCTAAGTTTCGTGAGAGCATGTGG 180
Query 551 ATCAGACGAGGAAGCTTTGTAGTGATTGACCATACAGGAAAGGAAAAGGCTCAAGAGTCT 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATCAGACGAGGAAGCTTTGTAGTGATTGACCATACAGGAAAGGAAAAGGCTCAAGAGTCT 240
Query 611 GGTAGCAAAGTTACATCTATTGTATGTAAAGTTCTATTCTTTGAGCAAGTCCGTCTTCTT 670
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 241 GGTAGTAAAGTTACATCTATTGTCTGTAAAGTTCTATTCTTTGAGCAAGTCCGTCTCCTT 300
Query 671 CAAAAGTCTCCGGAATGGCCAGAAATCTTCAAAGATACTAGACCGATTCCAGCTGAGAAA 730
|||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||| |||
Sbjct 301 CAAAAGTCCCCGGAATGGCCGGAAATCTTCAAAGATACTAAACCGATTCCAGCTGATAAA 360
Query 731 AGCTCACCCATTGAACAGCATGAAGATGACGGTGAAGTTGATTCGAGTGATGATGATGAT 790
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 361 AGCTCACCCATTGAACAGCATGAAGATGACGGTGAAATTGATTCGAGTGATGATGATGAT 420
Query 791 GGT---ATGCCTCCATTGCAAGCAAACACAAACAGATTGAGACCGTTTGGGGTG-AAGTG 846
| | ||||| |||||| ||||||||||||||||||||||||||||||| ||| || ||
Sbjct 421 GATGGCATGCCCCCATTGGAAGCAAACACAAACAGATTGAGACCGTTTGGTGTGCAA-TG 479
Query 847 TGA-TGCAGAAACTGATTCAGGGTCAGATTCCGATTCATAG 886
| | ||||||||| |||||||||||||||||||||||||||
Sbjct 480 T-ACTGCAGAAACAGATTCAGGGTCAGATTCCGATTCATAG 519
> Ahg932444 jgi|Araly1|932444|scaffold_400432.1
Length=258
Score = 289 bits (156), Expect = 3e-77
Identities = 173/181 (96%), Gaps = 2/181 (1%)
Strand=Plus/Plus
Query 364 AGAAGAGATGAACAGAGGAAGAAGGAATCTGAAACAAGCGGCGTCGGACCAGGATTTCAC 423
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 16 AGAAGAGATGAACAAAGGAAGAAGGAATCTGAAACAAGCGGCGTCGGAGCAGGATTTCAC 75
Query 424 GCTTGAGGAATGTCAGAGCATTGCCCAAGTCGTCTCTCTCAGAGGTTCCAATCAAATTGA 483
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 76 GTTTGAGGAATGTCAGAGCATTGCCCAAGTCGTCTCTCTCAGAGGTTCCAATCAAATTGA 135
Query 484 GATAATGGATGCAAAAGGAGAGAACTCATTAGCTTTGTTTCCAGCCAAG-TTTCGTGAGA 542
|||||||||||||||||||||||||||| |||| ||||||||| || || ||||||||||
Sbjct 136 GATAATGGATGCAAAAGGAGAGAACTCACTAGCATTGTTTCCA-CCTAGGTTTCGTGAGA 194
Query 543 G 543
|
Sbjct 195 G 195
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39228481593
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5