BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G40790.1

Length=861
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg321767 jgi|Araly1|321767|fgenesh1_pm.C_scaffold_4001824           715    0.0  


> Ahg321767 jgi|Araly1|321767|fgenesh1_pm.C_scaffold_4001824
Length=465

 Score =  715 bits (387),  Expect = 0.0
 Identities = 440/466 (94%), Gaps = 2/466 (0%)
 Strand=Plus/Plus

Query  251  ATGGGGAATCATTGTACAAGAATTCCTTGTTGTAAAAAGGTGTGTTCATGTATCTGCTGT  310
            |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct  1    ATGGGGAATCATTGTACAAGAATTCCTTGTTGTAGAAAGGTGTGTTCATGTATATGCTGT  60

Query  311  TGCAACAGAAGGAACAAGACTCAAGCTAGGAGCCAGAAAGGGTCCTACTTTATAAAAGGG  370
            |||| | |||||||||||||||||||| || ||||||||||||||| |||||||||||||
Sbjct  61   TGCAGCGGAAGGAACAAGACTCAAGCTTGGGGCCAGAAAGGGTCCTGCTTTATAAAAGGG  120

Query  371  AAGGTCCATCCGGTAAGTAGAATGGAGAAGTGGGAGGAGAAGATCACAGAAGCTAATAGT  430
            ||||||||||| || |||||||||||||| ||||||||||||||||| ||||||||||| 
Sbjct  121  AAGGTCCATCCCGTTAGTAGAATGGAGAAATGGGAGGAGAAGATCACTGAAGCTAATAGG  180

Query  431  CATGGCAAAATTCTTGTAGTGAATTTCAAGGCTTCGTGGTGTTTACCTAGTAA-AACAAT  489
            || ||||||||||| ||||||||||||||||||||||||||||||||| |||| || |||
Sbjct  181  CAAGGCAAAATTCTCGTAGTGAATTTCAAGGCTTCGTGGTGTTTACCTTGTAAGAA-AAT  239

Query  490  ATTACCAATATACCAGGAGCTTGCATCCACATACACCTCAATGATATTTGTCACTATAGA  549
            |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  240  AGCACCAATATACCAGGAGCTTGCATCCACATACACCTCAATGATATTTGTCACTATAGA  299

Query  550  CGTCGAAGAGCTCGCTGAGTTTAGTCATGAATGGAACGTGGATGCAACTCCAACAGTAGT  609
            ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  300  CGTGGAAGAGCTCGCTGAGTTTAGTCATGAATGGAACGTGGACGCAACTCCAACAGTAGT  359

Query  610  GTTCCTTAAAGATGGGAGGCAAATGGATAAACTTGTAGGTGGAGATGCTGCAGAGCTTCA  669
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  360  GTTCCTTAAAGATGGGAGGCAAATGGATAAACTTGTAGGTGGAGATGCTGCAGAGCTTCA  419

Query  670  GAAGAAAACTGCAGCAGCTGCAAATCTCCTTCTTAGACAATCTTAA  715
            ||||||||||||||||| ||||  ||||||||| ||||| ||||||
Sbjct  420  GAAGAAAACTGCAGCAGTTGCAGCTCTCCTTCTCAGACAGTCTTAA  465



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31870758612


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5