BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40800.1
Length=1600
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934889 jgi|Araly1|934889|scaffold_402877.1 1927 0.0
Ahg938598 jgi|Araly1|938598|scaffold_502789.1 929 0.0
> Ahg934889 jgi|Araly1|934889|scaffold_402877.1
Length=1178
Score = 1927 bits (1043), Expect = 0.0
Identities = 1134/1179 (96%), Gaps = 2/1179 (0%)
Strand=Plus/Plus
Query 181 GATCGATCTAAAAGGCTATAGAATATGGTGAAACCATCGGATTTCAAAGCAATTCAAGGG 240
||||||||||||||| |||| || |||||||||||||||||||| |||||||||||||||
Sbjct 1 GATCGATCTAAAAGGATATATAAGATGGTGAAACCATCGGATTTTAAAGCAATTCAAGGG 60
Query 241 TTTATTCGGCTGCATTACACTCGGGTCAACCCTGTCACAATTGGCCGATCAAACCCATCA 300
|||||||| |||||||||||||||||||||||||| | |||| ||||||||||||||||
Sbjct 61 TTTATTCGATTGCATTACACTCGGGTCAACCCTGTCTCCATTGCCCGATCAAACCCATCA 120
Query 301 GCTTTGTCTTCTCCAGCTATTCCCTCCAATGGTGTTTCTCAGCTTCAGCCTAAGTTTAGC 360
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 121 GCTTTGTCTTCTCCAGCTATTCCCTCCAATGGTGTTCCTCAGCTTCAGCCTAAGTTTAGC 180
Query 361 TTCCACAGCTTATCCTCGAAACCCACTTCCAAAAACGTGGGATTATATCAGATTCTGTCG 420
|| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 181 TTTCACAGCTTATCCTCGAAACCCACTTCCACAAACGTGGGATTATCTCAGATTCTGTCC 240
Query 421 TCTCCTAAGCTCAATCCTAAGTTGCAGCAAGCTTTGGGTTTGCCTCGTGTGAATGTGAGT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCTCCTAAGCTCAATCCTAAGTTGCAGCAAGCTTTGGGTTTGCCTCGTGTGAATGTGAGT 300
Query 481 TTTGCATCGGCGTTTAGATTGGTATCCACTAAGAGCTCTGGATTTCGAAAGGTTGATGGG 540
||||||||| ||||||||||||| |||| |||||||||||||||||||||| ||||||||
Sbjct 301 TTTGCATCGTCGTTTAGATTGGTCTCCAATAAGAGCTCTGGATTTCGAAAGATTGATGGG 360
Query 541 AGTTTTGCGAGAAAGGTTGTTGATAAGCCTGTCAAAGCTGTTAGTTCTACTTTTGCTAGA 600
| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 361 AACTTTGCGAGGAAGGTTGTTGATAAGCCTGTTAAAGCTGTTAGTTCTACTTTTGCTAGA 420
Query 601 TACCGTGAGGCTATAGGGTTGCACATTGATGCATTTTGGAAAAAGAATAGTCTTGTTGTG 660
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 421 TACCGTGAGGCTATTGGGTTGCACGTTGATGCATTTTGGAAAAAGAATAGTCTTGTTGTG 480
Query 661 TTTGGAGCTGCAGGTGTTTTTGTATGTATTTTCCTTTGGCGGATTATGTTTGGAATTGCT 720
|||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 481 TTTGGAGCTGGAGGTGTTTTTGTATGTATTTTCCTGTGGAGGATTATGTTTGGAATTGCT 540
Query 721 AGTACGTTTGTTGGCCTCTCAGAGGGCATGGCCAAGTATGGGTTTCTTGCACTCTCCTCA 780
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 541 AGTACGTTTGTTGGCCTCTCAGAGGGCATGGCCAAGTATGGGTTTCTAGCACTCTCCTCG 600
Query 781 GCCATTGTAGCATTTTCTGGATTATACCTCCGCTCAAGGTTTACAATTAATCCGGATAAA 840
||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 601 GCCATCGTAGCATTTTCTGGATTATACCTCCGCTCAAGGTTCACAATTAATCCCGATAAA 660
Query 841 GTTTATAGAATGACCATGAGGAAGATCAACACGGCAGCTGAAATTCTAGAAGTTATGGGT 900
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 661 GTTTATAGAATGACCATGAGGAAGATCAACACTGCAGCTGAAATTCTAGAAGTTATGGGT 720
Query 901 GCTCCTCTGTCAGGATCAGATTTACGAGCGTATGTGATGTCAGGTGGTGGCATAACATTT 960
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 721 GCTCCTCTGTCAGGATCAGATTTACGAGCTTATGTGATGTCAGGTGGTGGCATAACATTT 780
Query 961 AAGAAATTCAAGCCAACAATTAGGAGCAAGCGCTGCTTTCTTCTATTCCCCGTTCAGGGT 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AAGAAATTCAAGCCAACAATTAGGAGCAAGCGCTGCTTTCTTCTATTCCCCGTTCAGGGT 840
Query 1021 TCTGAGCA-AAAGGGCCTTGTTAGCGTTGAAGTTAAGAAGAAGAAAGGCCAGTATGACAT 1079
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TCTGAG-AGAAAGGGCCTTGTTAGCGTTGAAGTTAAGAAGAAGAAAGGCCAGTATGACAT 899
Query 1080 GAAGCTTTTGGCGGTAGATATTCCAATGGCATCTGGTCCCGACCAACGGTTATTTCTGAT 1139
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 900 GAAGCTTTTGGCGGTAGATATTCCAATGGCGTCTGGTCCCGACCAACGGCTATTTCTGAT 959
Query 1140 TGGCGATGAAGAAGAGTACAGAATTGGTGGTGGTTTAATCTCTGTGTTAAGAGACCCTGT 1199
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 960 TGGCGATGAAGAAGAGTACAGAATTGGTGGTGGTTTAATCTCTGTGTTAAGAGATCCTGT 1019
Query 1200 TGTGAAAGCAATGGCAGCAACTAAGGAGTTCGATAATCTTGATAGAATCgaagaggaaga 1259
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1020 TGTGAAAGCCATGGCAGCAACTAAGGAGTTTGATAATCTTGATAGAATCGAAGAGGAAGA 1079
Query 1260 agacgctgaaagagaacttcaagaagctgaaagaaagcatcgtgaagagaTCGAGAAACT 1319
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1080 AGACGCTGAAAGAGAACTTCAAGAAGCTGAAAGAAAGCACCGTGAAGAGATCGAGAAGCT 1139
Query 1320 CGAGAAGGAGGGCTCATAACTCGTATTTTCTTCCCCAGA 1358
||| || ||||||||||||||||||||||||||||||||
Sbjct 1140 CGAAAAAGAGGGCTCATAACTCGTATTTTCTTCCCCAGA 1178
> Ahg938598 jgi|Araly1|938598|scaffold_502789.1
Length=1360
Score = 929 bits (503), Expect = 0.0
Identities = 860/1029 (84%), Gaps = 38/1029 (4%)
Strand=Plus/Plus
Query 302 CTTTGTCTTCT-CCAG-CTATTCCCTCCAATGGTGTTTCTCAGCTTCAGCCTAAGTTTAG 359
||||| ||| | |||| | ||||||| ||||| |||||||||||||| |||||| ||
Sbjct 217 CTTTGGCTTGTCCCAGATTCTTCCCTCTAATGGGGTTTCTCAGCTTCAACCTAAGACCAG 276
Query 360 CTTCCACAGCTTATCCTCGAA-ACCCACTTCCAAAAACGTGGGATTATATCAGATTCT-G 417
||||||||||| | || || ||||||||| ||||| |||||||||| ||||||||
Sbjct 277 TTTCCACAGCTTTTTGTC-AAGACCCACTTCGAAAAATGTGGGATTATCCCAGATTCTAC 335
Query 418 TC-GT-CTCCTAAGCTCAAT-CCTAAG-TTGCAGCAAGCT-T--TG--G-G-T--TT--G 462
| || |||||||||| | ||| || |||||| || | | || | | | || |
Sbjct 336 CCAGTAGTCCTAAGCTC-GTACCT-AGTTTGCAG-AA-TTGTGGTGTAGCGTTGGTTAAG 391
Query 463 CCTCGTGTGAATGTGAGTTTTGCATCGGCGTTTAGATTGGTATCCACTAAGAGCTCTGGA 522
|| ||||| ||||||| ||||||||||| |||||||| || | | |||||||||
Sbjct 392 CCCCGTGTTAATGTGAACTTTGCATCGGCTTTTAGATT-GT-T----TTCGAGCTCTGGG 445
Query 523 TTTCGAAAGGTTGATGGGAGTTTTGCGAGAAAGGTTGTTGATAAGCCTGTCAAAGCTGTT 582
|||||||| || ||||||| ||| || |||||||||||||| ||||| || ||||||||
Sbjct 446 TTTCGAAAAGTCGATGGGAATTTCGCTAGAAAGGTTGTTGACAAGCCAATCCAAGCTGTT 505
Query 583 AGTTCTACTTTTGCTAGATACCGTGA-GGCTATAGGGTTGCACATTGATGCATTTTGGAA 641
||||| ||||||||||||||||| | |||| ||||||||||||||||||| ||||||||
Sbjct 506 AGTTCGACTTTTGCTAGATACCG-AATGGCTTTAGGGTTGCACATTGATGCGTTTTGGAA 564
Query 642 AAAGAATAGTCTTGTT-GTGTTTGGAGCTGCAGGTGTTTTTGTATGTATTTTCCTT-TGG 699
||||||| ||| || ||||||||||| | || |||||||||||||||||| ||| |||
Sbjct 565 GAAGAATAACCTT-TTGGTGTTTGGAGCAGGAGCTGTTTTTGTATGTATTTT-CTTGTGG 622
Query 700 CGGATTATGTTTGGAATTGCTAGTACGTTTGTTGGCCTCTCAGAGGGCATGGCCAAGTAT 759
|||| ||||||||||||||||| || || ||||| ||||| ||||| |||||||||||
Sbjct 623 AGGATCATGTTTGGAATTGCTAGCACATTCGTTGGTCTCTCTGAGGGAATGGCCAAGTAC 682
Query 760 GGGTTTCTTGCACTCTCCTCAGCCATTGTAGCATTTTCTGGATTATACCTCCGCTCAAGG 819
|| || ||||| ||||| || |||||||| |||||| |||| |||||||| ||| |||||
Sbjct 683 GGCTTCCTTGCTCTCTCATCTGCCATTGTTGCATTTGCTGGTTTATACCTTCGCGCAAGG 742
Query 820 TTTACAATTAATCCGGATAAAGTTTATAGAATGACCATGAGGAAGATCAACACGGCAGCT 879
|| || || ||||| |||||||| ||||| || || ||||||||| |||| || || |||
Sbjct 743 TTCACGATAAATCCCGATAAAGTCTATAGGATCACTATGAGGAAGCTCAATACAGCGGCT 802
Query 880 GAAATTCTAGAAGTTATGGGTGCTCCTCTGTCAGGATCAGATTTACGAGCGTATGTGATG 939
|| |||| ||||||||||||||||||||| ||||||||||||| || || |||||||||
Sbjct 803 GATGTTCTTGAAGTTATGGGTGCTCCTCTGGCAGGATCAGATTTGCGTGCTTATGTGATG 862
Query 940 TCAGGTGGTGGCATAACATTTAAGAAATTCAAGCCAACAATTAGGAGCAAGCGCTGCTTT 999
|||||||||||||||||||| || |||||||||||||||||||||| |||||| |||||
Sbjct 863 TCAGGTGGTGGCATAACATTCAAAAAATTCAAGCCAACAATTAGGAACAAGCGTTGCTTC 922
Query 1000 CTTCTATTCCCCGTTCAGGGTTCTGAGCA-AAAGGGCCTTGTTAGCGTTGAAGTTAAGAA 1058
|| |||||||| ||||| ||||| ||| | ||||||||||||||| || ||||| |||||
Sbjct 923 CTCCTATTCCCGGTTCAAGGTTCCGAG-AGAAAGGGCCTTGTTAGTGTCGAAGTCAAGAA 981
Query 1059 GAAGAAAGGCCAGTATGACATGAAGCTTTTGGCGGTAGATATTCCAATGGCATCTGGTCC 1118
|||||||||||||||||| ||||| || |||| || |||||||||||||| ||||||||
Sbjct 982 GAAGAAAGGCCAGTATGATATGAAACTACTGGCAGTGGATATTCCAATGGCGTCTGGTCC 1041
Query 1119 CGACCAACGGTTATTTCTGATTGGCGATGAAGAAGAGTACAGAATTGGTGGTGGTTTAAT 1178
|| ||||| ||||| || ||||| |||||||||||||||||| | ||||||||||| ||
Sbjct 1042 TGATCAACGCTTATTCCTTATTGGTGATGAAGAAGAGTACAGAGTCGGTGGTGGTTTGAT 1101
Query 1179 CTCTGTGTTAAGAGACCCTGTTGTGAAAGCAATGGCAGCAACTAAGGAGTTCGATAATCT 1238
||||| ||||||||| ||||| || ||||||||||||||||| || || || ||||||||
Sbjct 1102 CTCTGAGTTAAGAGATCCTGTGGTAAAAGCAATGGCAGCAACCAAAGAATTTGATAATCT 1161
Query 1239 TGATAGAATCgaagaggaagaagacgctgaaagagaacttcaagaagctgaaagaaagca 1298
||| ||||| ||||||||||||||||| |||||||||||||||||||| ||||| ||| |
Sbjct 1162 TGACAGAATTGAAGAGGAAGAAGACGCCGAAAGAGAACTTCAAGAAGCCGAAAGGAAGGA 1221
Query 1299 tcgtgaaga 1307
||||||||
Sbjct 1222 ACGTGAAGA 1230
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59954045630
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5