BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40802.1
Length=102
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934890 jgi|Araly1|934890|scaffold_402878.1 178 6e-45
Ahg934445 jgi|Araly1|934445|scaffold_402433.1 178 6e-45
> Ahg934890 jgi|Araly1|934890|scaffold_402878.1
Length=191
Score = 178 bits (96), Expect = 6e-45
Identities = 100/102 (98%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 1 ATGATTAATGATAATGATGGTGGTGATGTTGGGTCATTGTCTTCATGGGATTCAGGGAAA 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 15 ATGATTAATGATGATGATGGTGGTGATGTTGGGTCATTGTCTTCATGGGATTCAGGGAAA 74
Query 61 GCTAACTGTTTCTTCATATCTCACCATATCTTCCATAAATGA 102
|||||||||||||||||||||||||||||||| |||||||||
Sbjct 75 GCTAACTGTTTCTTCATATCTCACCATATCTTACATAAATGA 116
> Ahg934445 jgi|Araly1|934445|scaffold_402433.1
Length=257
Score = 178 bits (96), Expect = 6e-45
Identities = 100/102 (98%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 1 ATGATTAATGATAATGATGGTGGTGATGTTGGGTCATTGTCTTCATGGGATTCAGGGAAA 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 15 ATGATTAATGATGATGATGGTGGTGATGTTGGGTCATTGTCTTCATGGGATTCAGGGAAA 74
Query 61 GCTAACTGTTTCTTCATATCTCACCATATCTTCCATAAATGA 102
|||||||||||||||||||||||||||||||| |||||||||
Sbjct 75 GCTAACTGTTTCTTCATATCTCACCATATCTTACATAAATGA 116
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 3057674640
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5