BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40820.1
Length=1908
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483142 jgi|Araly1|483142|fgenesh2_kg.4__2202__AT2G40820.1 2294 0.0
> Ahg483142 jgi|Araly1|483142|fgenesh2_kg.4__2202__AT2G40820.1
Length=2815
Score = 2294 bits (1242), Expect = 0.0
Identities = 1427/1515 (94%), Gaps = 17/1515 (1%)
Strand=Plus/Plus
Query 79 TCTCTCTGTTTCTGGGGTTGGCTT-AAAAACTTACAAGATCCTGACAATGACTAAAGTAT 137
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 21 TCTCTCTGTTTCTGGGGTTGGCTTAAAAAACTGACAAGATCCTGACAATGACTAAAGTAT 80
Query 138 GTCCTAAAACAGAAGAAAAGAGAGTGGTGTCTGAAGCTGTGGTTGAACCAATTTCAGCAG 197
|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 81 GTCCTAAAACAGAAGAAAAGAGAGTGGTGTGTGAAGCACTGGTTGAACCAATTTCAGCAG 140
Query 198 ATGTGAGCTTTGCTTCTAATCATTTTCCAACGTACAAGTTAGGACCTGATGATCAGATTG 257
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 141 ACGTGAGCTTTGCTTCTAATCATTTTCCATTATACAAGTTAGGACCTGATGATCAGATTG 200
Query 258 TTGATGAACCTGATG-AAGATGATAAAGTTCCATCTGTCAAAGATGTCGTCGGTAAG-GA 315
||||||||||||| | |||||||||||| ||||||||||||||||||||||| | || ||
Sbjct 201 TTGATGAACCTGA-GCAAGATGATAAAGGTCCATCTGTCAAAGATGTCGTCGAT-AGAGA 258
Query 316 GACCGGAGATTTGTCAGATCAGCACAAGAAGCTTTCTGTTCGTGATCTCGCTTGCAAATT 375
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 259 GACCGGAGATTTGTCAGATCAGCACAAGAAGCTTTCAGTTCGTGATCTAGCTTGCAAATT 318
Query 376 TGACAAGAATTTAGCTGCAGCTTCTAAGTTAGTTGATGAGGCAAAGTTAAACGATGTGAC 435
|||||||||||||||||||||||||| |||||||| |||||||||||||| || |||||
Sbjct 319 CGACAAGAATTTAGCTGCAGCTTCTAAATTAGTTGACGAGGCAAAGTTAAATGAGGTGAC 378
Query 436 TTCTTTGGAAGGACATGTTATGCTAAAGAAACTTAGGGATGCTTTAGAAACCATGAGAGG 495
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 379 TTCTTTGGAAGGACATGTTATGCTAAAGAAACTTAGGGATGCTCTAGAAACTATGAGAGG 438
Query 496 TCGTATGGATGGAAGAAACAGAGAAGCAGTGGAAAAAGCTATCTCCATGGTTGAGGCACT 555
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 439 CCGTATGGATGGGCGAAACAGAGAAGCAGTGGAAAAAGCTATCTCCATGGTTGAGGCGCT 498
Query 556 AGCCGTTAAGTTAACTCAAAATGAAGGTGAACTAATTCATGATAAGTTTGAAGTGAAGAA 615
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 499 AGCCGTTAAGTTAACTCAAAATGAAGGTGAACTAATTCAAGATAAGTTTGAAGTGAAGAA 558
Query 616 ACTGGCAAGCTTCCTCAAGAAGGCTTCAGACGACGCGAAGAAGTTAGTAAACCAAGAAAA 675
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 559 ACTGGCAAGCTTCCTCAAGAAGGCTTCAGATGATGCGAAGAAGTTAGTAAACCAAGAAAA 618
Query 676 GTCGTTTGCTTGTGCTGAAATAGAGAGTGCACGGGCTCTTGTGATGAAACTTGGAGGTGC 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 619 GTCGTTTGCTTGTGCTGAAATAGAGAGTGCACGGGCTCTTGTGATGAAACTTGGAGGGGA 678
Query 736 ATTTGAAGAACAGGAGCTTTGTTCTAAAGCTTCTAGAGATCAGGGACCGAATGTGGAGAA 795
||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 679 ATTCCAAGAACAGGAGCTTTGTTTTAAAGCTTCTAGAGATCAGGGACCTAATGTGGAGAA 738
Query 796 ATTGGTTGAGGAGGTTCAGGAGGCTAGACGAATTAGACGGTTGCATAAACCAACCATGGT 855
||| ||||||||||||||||||||||||||||| |||| | ||||||||||||||| |||
Sbjct 739 ATTAGTTGAGGAGGTTCAGGAGGCTAGACGAATCAGACAGATGCATAAACCAACCAAGGT 798
Query 856 GATCGGTATGCAACATGAGCTTCGTGATTTAAAGAGTCAAATCCAAGAGAAGTCTGCATA 915
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 799 GATTGGTATGCAACATGAGCTTCGTGATTTAAAGAGTCAAATCCAAGAGAAGTCTGCATA 858
Query 916 TTCCGTTAAACTTCAAAGAGAGATAGCAATAATTAAGAAAGCTGAGGGGTCCAAGTCATG 975
||||||||| ||||||||||||||| ||||||| |||||||| |||||||||||||||||
Sbjct 859 TTCCGTTAAGCTTCAAAGAGAGATAACAATAATCAAGAAAGCCGAGGGGTCCAAGTCATG 918
Query 976 TCCGTATGTTCTGGATGGTGCACAAAGTCTTGGCTCGTGCCTAAGAATCCGTGCCTCCTC 1035
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 919 TCCATATGTTTTGGATGGTGCACAAAGTCTTGGCTCGTGCCTAAGAATCCGTGCCTCGTC 978
Query 1036 AGACAGTGGTATAGATATTTCCAAATGCTCAATCCATTGGTACCGTGCAGCATCTGAGTC 1095
|||||||||| |||||||||||||||| ||||| || ||||||||||||||||| |||||
Sbjct 979 AGACAGTGGTTTAGATATTTCCAAATGTTCAATTCAGTGGTACCGTGCAGCATCCGAGTC 1038
Query 1096 TAGTCGAAGAGAAGCTATATCTGGTGCCAACCGGTCAGTATATGCTCCAGAACCATTTGA 1155
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1039 TAGTCGAAGAGAAGCTATATCTGGTGCCAACCGGTCCGTATATGCTCCAGAACCATTTGA 1098
Query 1156 TGTCGGGCGAGTGATACAAGCAGACATTGTTTCAAATGGCCAGAAGTTCACCGTTACAAC 1215
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1099 TGTCGGGCGAGTGATACAAGCAGACATTGTTTCAAACGGCCAGAAGTTCACCGTTACAAC 1158
Query 1216 CGATGGTCCAATTAATACTGCTGCTGGCTTGCAGTCACGCGTTGAATCACTCCTGCGCAA 1275
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||
Sbjct 1159 GGATGGTCCAATTAATACTGCTGCTGGCTTGCAGTCACGCGTTGAAGCACTACTGCGAAA 1218
Query 1276 ATCTAACAGTGAATTCACCGTGGTTATATCACAGATGAATGGACAAGACCATGCATCACG 1335
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1219 ATCTAACAGTGAATTCACCGTGATTATATCACAAATGAATGGACAAGACCATGCATCACG 1278
Query 1336 ATCCCATGTATTTACTGTTGGAAAGGCGAGGATAAAGCTGTCCCGAGGATGGATCACAAA 1395
|||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1279 ATCCCACGTCTTTACTGTTGGAAAGGCGAGAATAAAGCTGTCCCGAGGATGGATCACAAA 1338
Query 1396 GGCTAGAGAAATATATTCAACCTCCATGCAGCTCTGTG-GAG-TG----------AGAGG 1443
||||||||||||||||||||||||||||||||| | | || | | |||
Sbjct 1339 GGCTAGAGAAATATATTCAACCTCCATGCAGCTTTATTTGAAATTTCTTTCTTTCAAAGG 1398
Query 1444 CAATGCTAACGTTCCTGCAAAGGCATTGTTCTGGCAACTTAGAAAGGGTCTAACTTTCTT 1503
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1399 CAATGCTAATGTTCCTGCAAAGGCATTGTTCTGGCAACTAAGAAAGGGTCTAACTTTCTT 1458
Query 1504 ACTAACTTTCGAGTCAGAGCAAGAACGTAATGCAGCCATAGTACTCGCACGAACATATGC 1563
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1459 ACTAACTTTCGAGTCAGAGCAAGAACGTAATGCAGCCATAGTACTCGCCCGAACATATGC 1518
Query 1564 ATATGATTGTAATGT 1578
||||||||| |||||
Sbjct 1519 ATATGATTGCAATGT 1533
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71685841090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5