BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40830.2
Length=1551
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483145 jgi|Araly1|483145|fgenesh2_kg.4__2205__AT2G40830.1 1740 0.0
> Ahg483145 jgi|Araly1|483145|fgenesh2_kg.4__2205__AT2G40830.1
Length=1357
Score = 1740 bits (942), Expect = 0.0
Identities = 1061/1118 (95%), Gaps = 10/1118 (1%)
Strand=Plus/Plus
Query 216 AGGTTTTTAACTGAGACCTGTCAAATAAGCTAAAGCTTCTTCTAAGAGCTTCAAGGAAAG 275
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 98 AGGTTTATAACTGAGACCTGTCAAATAAGCTAAAGCTTCTTCTAAGGGCTTCAAGGAAAG 157
Query 276 CA-TTGCATTGTTGTGGTCTTGTTTGTGTCCACAGAAGGAAAGAAGAGTGAGAAGCTCAG 334
| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 158 GATTTGCATTGTTGTGCTCTTGTTTGTGTCCACAGAAGGAAAGAAGAGTGAGAAGCTCAG 217
Query 335 GATGTCAAGCAGTCGAAATACCCACTGGTGTCACAGATGTCAGCGTGCTGTCCGCCTTCA 394
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 218 GATGTCAAGCAGTCGAAATACCCACTGGTGTCACAGATGCCAGCGTGCTGTCCGGCTTCA 277
Query 395 CGGCCAAGAGCCTGTATGCTTTTATTGCGGAGGTGGATTTGTTGAAGAACTTGATATGGC 454
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 278 CGGCCAAGATCCTGTATGCTCTTATTGCGGAGGTGGATTTGTTGAAGAACTTGATATGGC 337
Query 455 TCAAGCCAGCCCCTTTGATATGTTTAGA--TC-C---CACAGGGGTGTTGTAGAACGTGA 508
| |||||||||||||||||||||||||| || | |||||||||||||||||||||||
Sbjct 338 TGAAGCCAGCCCCTTTGATATGTTTAGAGCTCACAGTCACAGGGGTGTTGTAGAACGTGA 397
Query 509 TCAGACTTTTGATCTCATGGATGCTTTCTCTGTGTTTATGAGGAACCGCTTAGCTGAAAG 568
|| ||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||
Sbjct 398 TCCGACTTTTGATCTCATGGATGCTTTCTCTGCGTTTATGAGGAATCGCTTAGCCGAAAG 457
Query 569 GAGCCACGACAGAGAAATCAGAGGAAGAACCATCAGTTCAGGTCCTGAAAACTTTCCTGG 628
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 458 GAGCCACGACAGAGAAATCAGGGGAAGAACCATCAGTTCAGGTCCTGAAAACTTTCCTGG 517
Query 629 TCTGGCCCCTTTGTTGATCTTTGGTGGTCAAGTCCCTTATAGACTAACTGGCGACAATGC 688
|||||||||||| ||||||||||||||||| || |||||||||||| |||| ||||||||
Sbjct 518 TCTGGCCCCTTTATTGATCTTTGGTGGTCAGGTTCCTTATAGACTATCTGGAGACAATGC 577
Query 689 AGTCGAAGCCCTCTTCAATGGCGGCTCCCCTGGCATTGGCATCACACGTGGTAACACCGG 748
||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 578 AGTTGAAGCCCTCTTCAATGGCGGATCACCTGGCATTGGCATCACACGTGGTAACACCGG 637
Query 749 CGACTACTTCTTCGGTCCCGGCCTTGAAGAATTGTTCGAGCAGCTTTCAGCTGGCACTAC 808
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 638 CGACTACTTCTTCGGTCCCGGTCTTGAAGAATTGTTCGAGCAGCTTTCAGCTGGCACTAC 697
Query 809 TCGCCGAGGCCCACCACCCGCACCGAGATCAGCAATAGACGCATTGCCAACTATCAAGAT 868
||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 698 TCGCCGAGGTCCACCACCCGCACCGAGATCATCAATAGACGCATTGCCAACCATCAAGAT 757
Query 869 CGCGCAGAGGCATCTTAGGTCATCGGACTCGAATTGTCCCGTGTGCAAAGACGAATTCGA 928
|||||||||||||| || ||||| |||||||| ||||| ||||||||||||||||||||
Sbjct 758 TGCGCAGAGGCATCTCAGATCATCAGACTCGAACTGTCCTGTGTGCAAAGACGAATTCGA 817
Query 929 ACTGGGATCAGAAGCGAAACAGATGCCGTGTAACCACATCTATCATTCTGACTGCATTGT 988
||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||
Sbjct 818 ACTGGGATCAGAAGCAAAACAGATGCCATGCAACCACATCTATCATTCTGACTGCATTGT 877
Query 989 CCCGTGGCTGGTTCAGCACAACTCTTGCCCGGTCTGTCGCCAAGAGCTACCATCAGCTAG 1048
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 878 CCCGTGGCTGGTTCAGCACAACTCTTGCCCGGTCTGTCGCCAAGAGCTACCATCAGCTAG 937
Query 1049 CGGACCTTCAAGCAGTCAAAACAGAACCACCCCTACCAGAAACTACAGAAGCagtagtag 1108
||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 938 AGGACCTTCAGGCAGTCAAAACAGAACCACC---ACCAGAAACTACAGAAGTAGTAGTAG 994
Query 1109 tagtagtagtagtaACAGTCGTGAGAACGGGAATGAAAGAAGGAATCCTTTCTCTTCCTT 1168
|| ||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 995 TAATAGCAGTAGTAACAATCGTGAGAACGGCAATGAAAGAAGGAATCCTTTCTCTTCCTT 1054
Query 1169 CTGGCCATTCCGTTCGTCAGGTTCAAGCTCAAGCTCCACTCAAAACCGTGGAGGCACAAG 1228
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1055 TTGGCCATTCCGTTCGTCAGGTTCAAGCTCAAGCTCCAGTCAAAACCGTGGAGGCACAAG 1114
Query 1229 AAACTCGGATACAAGCGATGAGAACCATAACTACCATCAACAGCAACATCAACAATCATA 1288
|||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1115 AAACTCAGACACAACCGATGAGAACCATAACTACCATCAACAGCAACATCAACAATCATA 1174
Query 1289 TATGGGTTACAGTGGCTGGCCTTTTGATTACTAAAAGT 1326
||||||||||||||||||||||||||||||||||||||
Sbjct 1175 TATGGGTTACAGTGGCTGGCCTTTTGATTACTAAAAGT 1212
Score = 134 bits (72), Expect = 3e-30
Identities = 95/106 (90%), Gaps = 1/106 (1%)
Strand=Plus/Plus
Query 1371 TTACTTAAA-TATGCTTGTGATTCTGCATATGCCTTGTGCTTCActctctatctctctca 1429
||||| ||| ||||||| |||||||| | |||||||||| || |||| ||||||||||
Sbjct 1202 TTACTAAAAGTATGCTTATGATTCTGTGTCTGCCTTGTGCATCCCTCTTTATCTCTCTCT 1261
Query 1430 ctctctTTTATCAACATAAATAATGGAGAACTGTATTTGTTACTGT 1475
||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1262 CTCTCTTTTATCAACATAAATAATGGAGAACTGTAATTGTTACTGT 1307
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58087623625
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5