BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40850.1
Length=2080
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483147 jgi|Araly1|483147|fgenesh2_kg.4__2207__AT2G40850.1 3376 0.0
Ahg938620 jgi|Araly1|938620|scaffold_502811.1 736 0.0
> Ahg483147 jgi|Araly1|483147|fgenesh2_kg.4__2207__AT2G40850.1
Length=2080
Score = 3376 bits (1828), Expect = 0.0
Identities = 2002/2086 (96%), Gaps = 12/2086 (1%)
Strand=Plus/Plus
Query 1 aaaaaataagaaaacaaaaaaaaagaaaGGAGGAAGAAGTATCGTTTCGAAAGAGGGGAG 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAAATAAGAAAACCAAAAAAAAGAAAGGAGGAAGAAGTATCGTTTCGAAAGAGGGGAG 60
Query 61 TCTCAGGaaaaaaaGGACAGAAtttttttCCGGTGACAGTGTCGGTGTCTCTGACGCTCC 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTCAGGAAAAAAAGGACAG-ATTTTTTTCCGGTGACAGTGTCGGTGTCTCTGACGCTCC 119
Query 121 TCTCTG-TTTTCAATCTTTCTCCGTCTCTCCCTGAATGCCTTCGTCCGTATTCAGGAAAA 179
|||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 120 TCTCTGTTTTTCAATCTTTCTCCGTCTCTCCCTGAATGCCTTCATCCGTATTCAGGCAAA 179
Query 180 TTGCGGCGATTCATGGTTGGAGGAGCGAATACTTAAAGGGCACAATGGATTCAAGCGAAG 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TTGCGGCGATTCATGGTTGGAGGAGCGAATACTTAAAGGGCACAATGGATTCAAGCGAAG 239
Query 240 CAAAGGACACACCATCTTGTGGCTGTATATAGATCCAAGTTGATTTGTAGGTTTTTGaaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CAAAGGACACACCATCTTGTGGCTGTATATAGATCCAAGTTGATTTGTAGGTTTTTGAAA 299
Query 300 aaaaaTACGAAATTTTGTTTTAGTTGTGTAAATATATAAATAGGAGTGCCAA-AGAGTTT 358
||||||||| |||||| ||||||||||||||||||||||||||||||||||| | |||||
Sbjct 300 AAAAATACG-AATTTTTTTTTAGTTGTGTAAATATATAAATAGGAGTGCCAACAAAGTTT 358
Query 359 TGGCATGAATTGCTTGGCTACGACCATAATCATCACCTGCAAGCCCACATTGATCTCGGA 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TGGCATGAATTGCTTGGCTACGACCATAATCATCACCTGCAAGCCCACATTGATCTCGGA 418
Query 419 TATGGCCGTGGCTATTGATCCTTTCAGTGACAAGTTCCCTTACTTTAACCGATCCTCTCA 478
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 419 TATGGCCGTGGCTTTTGATCCTTTCAGTGACCAGTTCCCTTACTTTAACCGATCCTCTCA 478
Query 479 AAGATGCAGACTTCAATCCCTTACCAACCTTGACTTCAACTTCCTCGCGCAATCCTTTAA 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 AAGATGCAGACTTCAATCCCTTACCAACCTTGACTTCAACTTCCTCGCGCAATCCTTTAA 538
Query 539 TCATACGTTTGAAGATGACAACATCCATCGTAGTGTTTCCTCTCCTTGCTTT-TCCATAG 597
||||||| |||||||||||||||||||||| ||||||||||||||||| ||| |||||||
Sbjct 539 TCATACGGTTGAAGATGACAACATCCATCGAAGTGTTTCCTCTCCTTG-TTTCTCCATAG 597
Query 598 CTGCGTCTGCTAATATGGAGGAAGATCTCAAAGCAACCACGGCTCCACGGATTGAGATTC 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 CTGCGTCTGCTAATATGGAGGAAGATCTCAAAGCAACCACGGCTCCACGGATTGAGATTC 657
Query 658 TTGGTGGACAGAGAGTGCCCACCGTTCGTGCTCTTGTGGCTGAGGTGACCATGGCTATGG 717
|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 658 TTGGAGGACAGAGAGTGCCCACCGTTCGTGCCCTTGTGGCTGAGGTGACCATGGCTATTG 717
Query 718 TTTCTGGAGCTCAGCCTTTGCTTTTACCAAGTGGCATGGGAGGTGCTTATCTCTTGCAAA 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TTTCTGGAGCTCAGCCTTTGCTTTTACCAAGTGGCATGGGAGGTGCTTATCTCTTGCAAA 777
Query 778 CCGGAAAGGGACATAACATTGCTGTGGCTAAACCGGTTGATGAAGAGCCTCTAGCTTTCA 837
||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 778 CCGGAAAAGGACATAATATTGCTGTGGCTAAACCGGTTGATGAAGAGCCTCTAGCCTTCA 837
Query 838 ATAATCCTAAAAAGTCTGGAAATTTGATGCTCGGGCAACCGGGAATGAAACATTCAATTC 897
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 838 ATAATCCTAAAAAGTCCGGAAATTTGATGCTCGGGCAACCGGGAATGAAACACTCAATTC 897
Query 898 CTGTTGGCGAGACGGGTATCAGAGAACTAGCTGCCTACCTTTTGGATTACCAAGGCTTTT 957
||||||| || ||||||||| ||||||||||||| ||||||||||||||||||||||| |
Sbjct 898 CTGTTGGAGAAACGGGTATCCGAGAACTAGCTGCTTACCTTTTGGATTACCAAGGCTTCT 957
Query 958 CTGGTGTTCCACCAACAGCATTGGTTAGTATCTCACATGTCCCATTCCATGTCAGTGATG 1017
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 958 CTGGGGTTCCACCAACAGCATTGGTTAGTATCTCGCATGTCCCATTCCATGTCAGTGATG 1017
Query 1018 CCTTCTCTTTCTCCTCCATGCCCTATAAGGTTGCTTCCTTGCAGCGATTTGTGGGTCATG 1077
||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1018 CCTTCTCGTTCTCCTCCATGCCCTATAAAGTTGCTTCCTTGCAGCGATTTGTGGCTCATG 1077
Query 1078 ATTTTGATGCAGGAGAATTGGGTCCAGGAAGCTTCACGGCT-ACTTCGGTTCATAGGATT 1136
||||||||||||||||||||||||||||||||||||||| | || || ||||||||||||
Sbjct 1078 ATTTTGATGCAGGAGAATTGGGTCCAGGAAGCTTCACGG-TGACCTCCGTTCATAGGATT 1136
Query 1137 GGAATACTTGATGTGAGACTCCTGAACCTTGACAGACATGCTGGAAATATGCTAGTGAAG 1196
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1137 GGAATACTTGATGTGAGACTCCTGAATCTTGACAGACATGCTGGAAATATGCTAGTGAAG 1196
Query 1197 AGATGTGACAAAAAGGAAGCTTATAATCGACTTGGGACCGCTGAGCTTGTGCCTATTGAT 1256
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 AGATGTGACAAAAAAGAGGCTTATAATCGACTTGGGACCGCTGAGCTTGTGCCTATTGAT 1256
Query 1257 CATGGTCTCTGCCTCCCTGAATGCCTAGATGATCCTTACTTTGAATGGCTAAACTGGCCT 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 CATGGTCTCTGCCTCCCTGAATGCCTAGATGATCCTTACTTTGAATGGCTAAACTGGCCT 1316
Query 1317 CAAGCTTTGGTTCCATTCTCTGACACTGAACTGGATTATATATCCAATCTTGACCCTTTC 1376
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1317 CAAGCTTTGGTTCCATTCTCTGACACTGAACTGGAGTATATATCCAATCTCGACCCTTTC 1376
Query 1377 AAAGACGCAGAACTTCTGAGAACTGAACTACACTCTCTGCCGGAATCTGCCATAAGGGTC 1436
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1377 AAAGACGCAGAACTTCTGAGAACTGAACTAAACTCTTTGCCGGAATCTGCCATAAGGGTC 1436
Query 1437 CTCGTCGTCTGCACAGTTTTCTTAAAACAAGCAGCAGCTGCAGGGCTCTGTCTCGCGGAG 1496
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1437 CTCGTTGTCTGCACAGTTTTCTTAAAACAAGCTGCAGCTGCAGGGCTCTGTCTCGCAGAG 1496
Query 1497 ATAGGCGAGAAGATGACTCGGGATTTCTCCAAGGGTGAAGAGAGTTTCAGTCTGT-TAGA 1555
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1497 ATAGGCGAGAAGATGACTCGGGATTTCTCCAAGGGTGAAGAGAGTTTCAGTCT-TCTAGA 1555
Query 1556 GACCCTCTGCACCAAAGCGAAAGCAAGTGTCTTTGGCAAAACAAGCGAAGACAGTGACTA 1615
||| ||||||||||||||||| |||||||| |||||||||| |||||| |||||||||
Sbjct 1556 GACTATCTGCACCAAAGCGAAAACAAGTGTCGTTGGCAAAACTGGCGAAGGCAGTGACTA 1615
Query 1616 TAGTCATGAAGGAAATGAAGTGAACACAGAGTTACAGTGTGGAATGTTTAAGTTTGACGG 1675
|| ||| |||||||||||||||||||| |||||||| ||||||||| |||||||||||||
Sbjct 1616 TACTCACGAAGGAAATGAAGTGAACACGGAGTTACACTGTGGAATGCTTAAGTTTGACGG 1675
Query 1676 TGGAGATACACCATGTGAAGCGGAGATTTCAGAGGTATTTCATGTATCTAAACCACCTTT 1735
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1676 TGGAGATACCCCATGTGAAGCAGAGATTTCAGAGGTATTTCATGTATCTAAACCACCTTT 1735
Query 1736 GGTTCCAAGAGGGCCACGTGCAAACACCATCCCTAACGATGTAACTGCTTCC-ATGTCGT 1794
|||||||||||| |||||||||||||||||||| | | ||||||||||| || |||| ||
Sbjct 1736 GGTTCCAAGAGGACCACGTGCAAACACCATCCCCACCAATGTAACTGCT-CCGATGTTGT 1794
Query 1795 CATCACAAAACCAGCGGATTACTCATcaagagaaaagtgcaaaagaaaagaagagaggag 1854
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 1795 CATCACAAAACCAGCGGATTACTCATCATGAGAAAAATGCAAAAGAAAAGAAGAGAGGAG 1854
Query 1855 gcaagcaagaaagaTGCACCGTGAGGAGCAAGAGCCCACCGATCAGTCCAAACCATGATG 1914
|||| ||||||||||||||| ||||||||||||||||||| || || ||||||||||||
Sbjct 1855 GCAAACAAGAAAGATGCACCATGAGGAGCAAGAGCCCACCAATTTGTGCAAACCATGATG 1914
Query 1915 AATCAAAAGGAGTTTCCTTCGTGGACATGACAACAGTTGAATGGGATACGTTCCTGCAGA 1974
|||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1915 AATCAAAAGGTGTTTTTTTCGTGGACATGACAACAGTTGAATGGGATATGTTCCTGCAGA 1974
Query 1975 GCTTCCAGACACTTTTGCAAGATGCACTGAGCAAAGGGTCAACGCCAAGATTAGGATGCT 2034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1975 GCTTCCAGACACTTTTGCAAGATGCACTGAGCAAAGGGTCAACGCCAAGATTAGGATGCT 2034
Query 2035 CCTGCGAAATTTGAGGAAATCGATTAATAGAAGACAGGAAAACGAC 2080
||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 2035 CCTGCGAAATTTGAGGAAATCAATTAATAGAAGACAGGCAAACGAC 2080
> Ahg938620 jgi|Araly1|938620|scaffold_502811.1
Length=1653
Score = 736 bits (398), Expect = 0.0
Identities = 854/1066 (80%), Gaps = 63/1066 (6%)
Strand=Plus/Plus
Query 639 GCTCCACGGATTGAGATTCTTGGTGGACAGAGAGTGCCCACCGTTCGTGCTCTTGTGGCT 698
||||| || ||||||||||| ||||| || ||||| ||||| || || || ||||| |||
Sbjct 247 GCTCCGCGCATTGAGATTCTCGGTGGTCAAAGAGTCCCCACTGTACGCGCCCTTGTAGCT 306
Query 699 GAGGTGACCATGGCTATGGTTTCTGGAGCTCAGCCTTTGCTTTTACCAAGTGGCATGGGA 758
|| || ||||| ||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 307 GAAGTAACCATAGCTATGGTTTCTGGAGCTCAGCCTTTGCTTTTACCAAGTGGTTTAGGA 366
Query 759 GGTGCTTATCTCTTGCAAACCGGAAAGGGACATAACATTGCTGTGGCTAAA-CCGGTTGA 817
|||||||||||||||||||||||||| || || |||||||| || || ||| || || ||
Sbjct 367 GGTGCTTATCTCTTGCAAACCGGAAATGGTCACAACATTGCGGTTGC-AAAGCCAGTAGA 425
Query 818 TGAAGAGCCTCTAGCTTTCAATAATCCTAAAA-AGTCTGGAA-ATTTGATGCTCGGGCAA 875
|||||||||| ||||||| || ||||||||| | ||||| ||| || ||| || |||
Sbjct 426 TGAAGAGCCTTTAGCTTTTAACAATCCTAAAGGA-TCTGGTGGATT-GACGCTAGGACAA 483
Query 876 CC-GGGAATGAAACATTCAATTC-CTGTTGGCGAGA-CGGGTATCAGAGAACTAGCTGCC 932
|| |||| |||||| ||||| | | ||||| || | ||| ||| | ||| | |||||
Sbjct 484 CCAGGGA-TGAAACGGTCAATCCGC-GTTGGTGAAAGCGGA-ATCCGTGAATTGGCTGCT 540
Query 933 TACCTTTTGGATTACCAAGGCTTTTCTGGTGTTCCACCAACAGCATTGGTTAGTATCTCA 992
|||||||| || ||||||||||||| || ||||||||||| |||||||| || |||||
Sbjct 541 TACCTTTTAGACCACCAAGGCTTTTCCGGGGTTCCACCAACTGCATTGGTCAGAATCTCG 600
Query 993 CATGTCCCATTCCATGTCAGTGAT-GCCTTCTCTTTCTCCTCCATGCCCTATAAGGTTGC 1051
||||| || |||||| |||||||| | | || | || || || || ||| ||||
Sbjct 601 CATGTTCCGTTCCATATCAGTGATAG--TGATCA--CGCCGCC-TG---TA-AAG-TTGC 650
Query 1052 TTCCTTGCAGCGATTTGTGGGTCATGATTTTGATGCAGGAGAA-TTGGGTCCAGGAAGCT 1110
||| ||||| ||||||||||||||||| |||||||||||||| |||| || ||||||||
Sbjct 651 TTCTTTGCAACGATTTGTGGGTCATGACTTTGATGCAGGAGAGCTTGGATC-AGGAAGCT 709
Query 1111 TCACGGCTACTTCGGTTCATAGGATTGGAATACTTGATGTGAGACTCCTGAACCTTGACA 1170
|||||| | || || ||||||||||| ||||||||||||||| || ||||||||||||
Sbjct 710 TCACGGTTGGATCTGTCCATAGGATTGGCATACTTGATGTGAGAGTCTTGAACCTTGACA 769
Query 1171 GACATGCTGGAAATATGCTAGTGAAGA-GATG--TGACAAAAAGGA-AG--CTT---ATA 1221
|||| |||||||| ||| | ||||||| ||| |||| || | || || ||| |||
Sbjct 770 GACACGCTGGAAACATGTTGGTGAAGAAGATACATGACCAAGATGAGAGTACTTGTTATA 829
Query 1222 ATCGACTTGG-GACCGCTGAGCTTGTGCCTATTGATCATGGTCTCTGCCT-CCCTGAATG 1279
|| || |||| | |||||||||| |||||||| ||||||||||| ||||| ||| |||||
Sbjct 830 ATGGAGTTGGAG-CCGCTGAGCTCGTGCCTATAGATCATGGTCTTTGCCTACCC-GAATG 887
Query 1280 CCTAGATGATCCTTACTTT-GAATGGCTAAACTGGCCTCAAGCTTTGGTTCCATTCTCTG 1338
||| || |||||||| ||| |||||||| |||||||||||||||| ||| |||||| | |
Sbjct 888 CCTTGACGATCCTTA-TTTCGAATGGCTTAACTGGCCTCAAGCTTCGGTGCCATTCACCG 946
Query 1339 ACACTGAACTGGATTATATATCCAATCTTG-ACCCTTTCAAAGACGCAGAACTTCTGAGA 1397
||||||| || | |||||||| || |||| ||||||||||||||||||| ||| |||||
Sbjct 947 ACACTGAGCTTCAGTATATATCAAA-CTTGGACCCTTTCAAAGACGCAGAGCTTTTGAGA 1005
Query 1398 ACTGAACTACACTCTCTGCCGGAATCTGCCATAAGGGTCCTCGTCGTCTGCACAGTT-TT 1456
|| |||||| ||| | | ||||||| || || |||| ||| |||||||||| | | ||
Sbjct 1006 ACCGAACTAGGCTCAATACAGGAATCTTCCCTACGGGTTCTCATCGTCTGCAC-GATATT 1064
Query 1457 CTTAAAACAAGCAGCAGCTGCAGGGCTCT-GTCTCGCGGAGATAGGCGAGAAGATGACTC 1515
||| |||||||| || | ||||||||| | |||| || |||||||| |||||||||||||
Sbjct 1065 CTTGAAACAAGCTGCTGGTGCAGGGCT-TAGTCTTGCAGAGATAGGAGAGAAGATGACTC 1123
Query 1516 GGGATTTCTCCA-AGGGTGAAGAGAGTT-TCAGTCTGTTAGAGACCCTCTGCACCAAAGC 1573
|||| ||| || |||| ||||||||| | ||| |||| |||| | |||| ||||||
Sbjct 1124 GGGACATCTGCAGAGGG-GAAGAGAGTACT-AGTGTGTTGGAGATTATTTGCAACAAAGC 1181
Query 1574 GAAAGCAAGTGTCT-TTGGCAAAACA-AGCGAAGACAGTGACTATAGTCA-TGAA-GGAA 1629
|||||||| | | || | ||| | ||| || ||| |||||| | |||| ||||
Sbjct 1182 AAAAGCAAGCG-CGGTTAGTGGAACTGA-CGATGA---TGATTATAGT-AGTGAATGGAA 1235
Query 1630 ATGAAGT-GAACACAGAGTTACAGTGTGGAATGTTTAAGTTTGACG 1674
|||||| ||| |||| || |||||||||| ||| |||||||||
Sbjct 1236 -TGAAGTAGAAG-CAGAACTAGAGTGTGGAATTTTTCAGTTTGACG 1279
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78237363230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5