BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G40850.1 Length=2080 Score E Sequences producing significant alignments: (Bits) Value Ahg483147 jgi|Araly1|483147|fgenesh2_kg.4__2207__AT2G40850.1 3376 0.0 Ahg938620 jgi|Araly1|938620|scaffold_502811.1 736 0.0 > Ahg483147 jgi|Araly1|483147|fgenesh2_kg.4__2207__AT2G40850.1 Length=2080 Score = 3376 bits (1828), Expect = 0.0 Identities = 2002/2086 (96%), Gaps = 12/2086 (1%) Strand=Plus/Plus Query 1 aaaaaataagaaaacaaaaaaaaagaaaGGAGGAAGAAGTATCGTTTCGAAAGAGGGGAG 60 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AAAAAATAAGAAAACCAAAAAAAAGAAAGGAGGAAGAAGTATCGTTTCGAAAGAGGGGAG 60 Query 61 TCTCAGGaaaaaaaGGACAGAAtttttttCCGGTGACAGTGTCGGTGTCTCTGACGCTCC 120 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 61 TCTCAGGAAAAAAAGGACAG-ATTTTTTTCCGGTGACAGTGTCGGTGTCTCTGACGCTCC 119 Query 121 TCTCTG-TTTTCAATCTTTCTCCGTCTCTCCCTGAATGCCTTCGTCCGTATTCAGGAAAA 179 |||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||| Sbjct 120 TCTCTGTTTTTCAATCTTTCTCCGTCTCTCCCTGAATGCCTTCATCCGTATTCAGGCAAA 179 Query 180 TTGCGGCGATTCATGGTTGGAGGAGCGAATACTTAAAGGGCACAATGGATTCAAGCGAAG 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 TTGCGGCGATTCATGGTTGGAGGAGCGAATACTTAAAGGGCACAATGGATTCAAGCGAAG 239 Query 240 CAAAGGACACACCATCTTGTGGCTGTATATAGATCCAAGTTGATTTGTAGGTTTTTGaaa 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 CAAAGGACACACCATCTTGTGGCTGTATATAGATCCAAGTTGATTTGTAGGTTTTTGAAA 299 Query 300 aaaaaTACGAAATTTTGTTTTAGTTGTGTAAATATATAAATAGGAGTGCCAA-AGAGTTT 358 ||||||||| |||||| ||||||||||||||||||||||||||||||||||| | ||||| Sbjct 300 AAAAATACG-AATTTTTTTTTAGTTGTGTAAATATATAAATAGGAGTGCCAACAAAGTTT 358 Query 359 TGGCATGAATTGCTTGGCTACGACCATAATCATCACCTGCAAGCCCACATTGATCTCGGA 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 359 TGGCATGAATTGCTTGGCTACGACCATAATCATCACCTGCAAGCCCACATTGATCTCGGA 418 Query 419 TATGGCCGTGGCTATTGATCCTTTCAGTGACAAGTTCCCTTACTTTAACCGATCCTCTCA 478 ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 419 TATGGCCGTGGCTTTTGATCCTTTCAGTGACCAGTTCCCTTACTTTAACCGATCCTCTCA 478 Query 479 AAGATGCAGACTTCAATCCCTTACCAACCTTGACTTCAACTTCCTCGCGCAATCCTTTAA 538 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 AAGATGCAGACTTCAATCCCTTACCAACCTTGACTTCAACTTCCTCGCGCAATCCTTTAA 538 Query 539 TCATACGTTTGAAGATGACAACATCCATCGTAGTGTTTCCTCTCCTTGCTTT-TCCATAG 597 ||||||| |||||||||||||||||||||| ||||||||||||||||| ||| ||||||| Sbjct 539 TCATACGGTTGAAGATGACAACATCCATCGAAGTGTTTCCTCTCCTTG-TTTCTCCATAG 597 Query 598 CTGCGTCTGCTAATATGGAGGAAGATCTCAAAGCAACCACGGCTCCACGGATTGAGATTC 657 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 598 CTGCGTCTGCTAATATGGAGGAAGATCTCAAAGCAACCACGGCTCCACGGATTGAGATTC 657 Query 658 TTGGTGGACAGAGAGTGCCCACCGTTCGTGCTCTTGTGGCTGAGGTGACCATGGCTATGG 717 |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| | Sbjct 658 TTGGAGGACAGAGAGTGCCCACCGTTCGTGCCCTTGTGGCTGAGGTGACCATGGCTATTG 717 Query 718 TTTCTGGAGCTCAGCCTTTGCTTTTACCAAGTGGCATGGGAGGTGCTTATCTCTTGCAAA 777 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 718 TTTCTGGAGCTCAGCCTTTGCTTTTACCAAGTGGCATGGGAGGTGCTTATCTCTTGCAAA 777 Query 778 CCGGAAAGGGACATAACATTGCTGTGGCTAAACCGGTTGATGAAGAGCCTCTAGCTTTCA 837 ||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 778 CCGGAAAAGGACATAATATTGCTGTGGCTAAACCGGTTGATGAAGAGCCTCTAGCCTTCA 837 Query 838 ATAATCCTAAAAAGTCTGGAAATTTGATGCTCGGGCAACCGGGAATGAAACATTCAATTC 897 |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 838 ATAATCCTAAAAAGTCCGGAAATTTGATGCTCGGGCAACCGGGAATGAAACACTCAATTC 897 Query 898 CTGTTGGCGAGACGGGTATCAGAGAACTAGCTGCCTACCTTTTGGATTACCAAGGCTTTT 957 ||||||| || ||||||||| ||||||||||||| ||||||||||||||||||||||| | Sbjct 898 CTGTTGGAGAAACGGGTATCCGAGAACTAGCTGCTTACCTTTTGGATTACCAAGGCTTCT 957 Query 958 CTGGTGTTCCACCAACAGCATTGGTTAGTATCTCACATGTCCCATTCCATGTCAGTGATG 1017 |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 958 CTGGGGTTCCACCAACAGCATTGGTTAGTATCTCGCATGTCCCATTCCATGTCAGTGATG 1017 Query 1018 CCTTCTCTTTCTCCTCCATGCCCTATAAGGTTGCTTCCTTGCAGCGATTTGTGGGTCATG 1077 ||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||| Sbjct 1018 CCTTCTCGTTCTCCTCCATGCCCTATAAAGTTGCTTCCTTGCAGCGATTTGTGGCTCATG 1077 Query 1078 ATTTTGATGCAGGAGAATTGGGTCCAGGAAGCTTCACGGCT-ACTTCGGTTCATAGGATT 1136 ||||||||||||||||||||||||||||||||||||||| | || || |||||||||||| Sbjct 1078 ATTTTGATGCAGGAGAATTGGGTCCAGGAAGCTTCACGG-TGACCTCCGTTCATAGGATT 1136 Query 1137 GGAATACTTGATGTGAGACTCCTGAACCTTGACAGACATGCTGGAAATATGCTAGTGAAG 1196 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1137 GGAATACTTGATGTGAGACTCCTGAATCTTGACAGACATGCTGGAAATATGCTAGTGAAG 1196 Query 1197 AGATGTGACAAAAAGGAAGCTTATAATCGACTTGGGACCGCTGAGCTTGTGCCTATTGAT 1256 |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 1197 AGATGTGACAAAAAAGAGGCTTATAATCGACTTGGGACCGCTGAGCTTGTGCCTATTGAT 1256 Query 1257 CATGGTCTCTGCCTCCCTGAATGCCTAGATGATCCTTACTTTGAATGGCTAAACTGGCCT 1316 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1257 CATGGTCTCTGCCTCCCTGAATGCCTAGATGATCCTTACTTTGAATGGCTAAACTGGCCT 1316 Query 1317 CAAGCTTTGGTTCCATTCTCTGACACTGAACTGGATTATATATCCAATCTTGACCCTTTC 1376 ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 1317 CAAGCTTTGGTTCCATTCTCTGACACTGAACTGGAGTATATATCCAATCTCGACCCTTTC 1376 Query 1377 AAAGACGCAGAACTTCTGAGAACTGAACTACACTCTCTGCCGGAATCTGCCATAAGGGTC 1436 |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 1377 AAAGACGCAGAACTTCTGAGAACTGAACTAAACTCTTTGCCGGAATCTGCCATAAGGGTC 1436 Query 1437 CTCGTCGTCTGCACAGTTTTCTTAAAACAAGCAGCAGCTGCAGGGCTCTGTCTCGCGGAG 1496 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 1437 CTCGTTGTCTGCACAGTTTTCTTAAAACAAGCTGCAGCTGCAGGGCTCTGTCTCGCAGAG 1496 Query 1497 ATAGGCGAGAAGATGACTCGGGATTTCTCCAAGGGTGAAGAGAGTTTCAGTCTGT-TAGA 1555 ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 1497 ATAGGCGAGAAGATGACTCGGGATTTCTCCAAGGGTGAAGAGAGTTTCAGTCT-TCTAGA 1555 Query 1556 GACCCTCTGCACCAAAGCGAAAGCAAGTGTCTTTGGCAAAACAAGCGAAGACAGTGACTA 1615 ||| ||||||||||||||||| |||||||| |||||||||| |||||| ||||||||| Sbjct 1556 GACTATCTGCACCAAAGCGAAAACAAGTGTCGTTGGCAAAACTGGCGAAGGCAGTGACTA 1615 Query 1616 TAGTCATGAAGGAAATGAAGTGAACACAGAGTTACAGTGTGGAATGTTTAAGTTTGACGG 1675 || ||| |||||||||||||||||||| |||||||| ||||||||| ||||||||||||| Sbjct 1616 TACTCACGAAGGAAATGAAGTGAACACGGAGTTACACTGTGGAATGCTTAAGTTTGACGG 1675 Query 1676 TGGAGATACACCATGTGAAGCGGAGATTTCAGAGGTATTTCATGTATCTAAACCACCTTT 1735 ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1676 TGGAGATACCCCATGTGAAGCAGAGATTTCAGAGGTATTTCATGTATCTAAACCACCTTT 1735 Query 1736 GGTTCCAAGAGGGCCACGTGCAAACACCATCCCTAACGATGTAACTGCTTCC-ATGTCGT 1794 |||||||||||| |||||||||||||||||||| | | ||||||||||| || |||| || Sbjct 1736 GGTTCCAAGAGGACCACGTGCAAACACCATCCCCACCAATGTAACTGCT-CCGATGTTGT 1794 Query 1795 CATCACAAAACCAGCGGATTACTCATcaagagaaaagtgcaaaagaaaagaagagaggag 1854 |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| Sbjct 1795 CATCACAAAACCAGCGGATTACTCATCATGAGAAAAATGCAAAAGAAAAGAAGAGAGGAG 1854 Query 1855 gcaagcaagaaagaTGCACCGTGAGGAGCAAGAGCCCACCGATCAGTCCAAACCATGATG 1914 |||| ||||||||||||||| ||||||||||||||||||| || || |||||||||||| Sbjct 1855 GCAAACAAGAAAGATGCACCATGAGGAGCAAGAGCCCACCAATTTGTGCAAACCATGATG 1914 Query 1915 AATCAAAAGGAGTTTCCTTCGTGGACATGACAACAGTTGAATGGGATACGTTCCTGCAGA 1974 |||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1915 AATCAAAAGGTGTTTTTTTCGTGGACATGACAACAGTTGAATGGGATATGTTCCTGCAGA 1974 Query 1975 GCTTCCAGACACTTTTGCAAGATGCACTGAGCAAAGGGTCAACGCCAAGATTAGGATGCT 2034 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1975 GCTTCCAGACACTTTTGCAAGATGCACTGAGCAAAGGGTCAACGCCAAGATTAGGATGCT 2034 Query 2035 CCTGCGAAATTTGAGGAAATCGATTAATAGAAGACAGGAAAACGAC 2080 ||||||||||||||||||||| |||||||||||||||| ||||||| Sbjct 2035 CCTGCGAAATTTGAGGAAATCAATTAATAGAAGACAGGCAAACGAC 2080 > Ahg938620 jgi|Araly1|938620|scaffold_502811.1 Length=1653 Score = 736 bits (398), Expect = 0.0 Identities = 854/1066 (80%), Gaps = 63/1066 (6%) Strand=Plus/Plus Query 639 GCTCCACGGATTGAGATTCTTGGTGGACAGAGAGTGCCCACCGTTCGTGCTCTTGTGGCT 698 ||||| || ||||||||||| ||||| || ||||| ||||| || || || ||||| ||| Sbjct 247 GCTCCGCGCATTGAGATTCTCGGTGGTCAAAGAGTCCCCACTGTACGCGCCCTTGTAGCT 306 Query 699 GAGGTGACCATGGCTATGGTTTCTGGAGCTCAGCCTTTGCTTTTACCAAGTGGCATGGGA 758 || || ||||| ||||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 307 GAAGTAACCATAGCTATGGTTTCTGGAGCTCAGCCTTTGCTTTTACCAAGTGGTTTAGGA 366 Query 759 GGTGCTTATCTCTTGCAAACCGGAAAGGGACATAACATTGCTGTGGCTAAA-CCGGTTGA 817 |||||||||||||||||||||||||| || || |||||||| || || ||| || || || Sbjct 367 GGTGCTTATCTCTTGCAAACCGGAAATGGTCACAACATTGCGGTTGC-AAAGCCAGTAGA 425 Query 818 TGAAGAGCCTCTAGCTTTCAATAATCCTAAAA-AGTCTGGAA-ATTTGATGCTCGGGCAA 875 |||||||||| ||||||| || ||||||||| | ||||| ||| || ||| || ||| Sbjct 426 TGAAGAGCCTTTAGCTTTTAACAATCCTAAAGGA-TCTGGTGGATT-GACGCTAGGACAA 483 Query 876 CC-GGGAATGAAACATTCAATTC-CTGTTGGCGAGA-CGGGTATCAGAGAACTAGCTGCC 932 || |||| |||||| ||||| | | ||||| || | ||| ||| | ||| | ||||| Sbjct 484 CCAGGGA-TGAAACGGTCAATCCGC-GTTGGTGAAAGCGGA-ATCCGTGAATTGGCTGCT 540 Query 933 TACCTTTTGGATTACCAAGGCTTTTCTGGTGTTCCACCAACAGCATTGGTTAGTATCTCA 992 |||||||| || ||||||||||||| || ||||||||||| |||||||| || ||||| Sbjct 541 TACCTTTTAGACCACCAAGGCTTTTCCGGGGTTCCACCAACTGCATTGGTCAGAATCTCG 600 Query 993 CATGTCCCATTCCATGTCAGTGAT-GCCTTCTCTTTCTCCTCCATGCCCTATAAGGTTGC 1051 ||||| || |||||| |||||||| | | || | || || || || ||| |||| Sbjct 601 CATGTTCCGTTCCATATCAGTGATAG--TGATCA--CGCCGCC-TG---TA-AAG-TTGC 650 Query 1052 TTCCTTGCAGCGATTTGTGGGTCATGATTTTGATGCAGGAGAA-TTGGGTCCAGGAAGCT 1110 ||| ||||| ||||||||||||||||| |||||||||||||| |||| || |||||||| Sbjct 651 TTCTTTGCAACGATTTGTGGGTCATGACTTTGATGCAGGAGAGCTTGGATC-AGGAAGCT 709 Query 1111 TCACGGCTACTTCGGTTCATAGGATTGGAATACTTGATGTGAGACTCCTGAACCTTGACA 1170 |||||| | || || ||||||||||| ||||||||||||||| || |||||||||||| Sbjct 710 TCACGGTTGGATCTGTCCATAGGATTGGCATACTTGATGTGAGAGTCTTGAACCTTGACA 769 Query 1171 GACATGCTGGAAATATGCTAGTGAAGA-GATG--TGACAAAAAGGA-AG--CTT---ATA 1221 |||| |||||||| ||| | ||||||| ||| |||| || | || || ||| ||| Sbjct 770 GACACGCTGGAAACATGTTGGTGAAGAAGATACATGACCAAGATGAGAGTACTTGTTATA 829 Query 1222 ATCGACTTGG-GACCGCTGAGCTTGTGCCTATTGATCATGGTCTCTGCCT-CCCTGAATG 1279 || || |||| | |||||||||| |||||||| ||||||||||| ||||| ||| ||||| Sbjct 830 ATGGAGTTGGAG-CCGCTGAGCTCGTGCCTATAGATCATGGTCTTTGCCTACCC-GAATG 887 Query 1280 CCTAGATGATCCTTACTTT-GAATGGCTAAACTGGCCTCAAGCTTTGGTTCCATTCTCTG 1338 ||| || |||||||| ||| |||||||| |||||||||||||||| ||| |||||| | | Sbjct 888 CCTTGACGATCCTTA-TTTCGAATGGCTTAACTGGCCTCAAGCTTCGGTGCCATTCACCG 946 Query 1339 ACACTGAACTGGATTATATATCCAATCTTG-ACCCTTTCAAAGACGCAGAACTTCTGAGA 1397 ||||||| || | |||||||| || |||| ||||||||||||||||||| ||| ||||| Sbjct 947 ACACTGAGCTTCAGTATATATCAAA-CTTGGACCCTTTCAAAGACGCAGAGCTTTTGAGA 1005 Query 1398 ACTGAACTACACTCTCTGCCGGAATCTGCCATAAGGGTCCTCGTCGTCTGCACAGTT-TT 1456 || |||||| ||| | | ||||||| || || |||| ||| |||||||||| | | || Sbjct 1006 ACCGAACTAGGCTCAATACAGGAATCTTCCCTACGGGTTCTCATCGTCTGCAC-GATATT 1064 Query 1457 CTTAAAACAAGCAGCAGCTGCAGGGCTCT-GTCTCGCGGAGATAGGCGAGAAGATGACTC 1515 ||| |||||||| || | ||||||||| | |||| || |||||||| ||||||||||||| Sbjct 1065 CTTGAAACAAGCTGCTGGTGCAGGGCT-TAGTCTTGCAGAGATAGGAGAGAAGATGACTC 1123 Query 1516 GGGATTTCTCCA-AGGGTGAAGAGAGTT-TCAGTCTGTTAGAGACCCTCTGCACCAAAGC 1573 |||| ||| || |||| ||||||||| | ||| |||| |||| | |||| |||||| Sbjct 1124 GGGACATCTGCAGAGGG-GAAGAGAGTACT-AGTGTGTTGGAGATTATTTGCAACAAAGC 1181 Query 1574 GAAAGCAAGTGTCT-TTGGCAAAACA-AGCGAAGACAGTGACTATAGTCA-TGAA-GGAA 1629 |||||||| | | || | ||| | ||| || ||| |||||| | |||| |||| Sbjct 1182 AAAAGCAAGCG-CGGTTAGTGGAACTGA-CGATGA---TGATTATAGT-AGTGAATGGAA 1235 Query 1630 ATGAAGT-GAACACAGAGTTACAGTGTGGAATGTTTAAGTTTGACG 1674 |||||| ||| |||| || |||||||||| ||| ||||||||| Sbjct 1236 -TGAAGTAGAAG-CAGAACTAGAGTGTGGAATTTTTCAGTTTGACG 1279 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 78237363230 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5