BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40860.1
Length=2230
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483148 jgi|Araly1|483148|fgenesh2_kg.4__2208__AT2G40860.1 3524 0.0
> Ahg483148 jgi|Araly1|483148|fgenesh2_kg.4__2208__AT2G40860.1
Length=2229
Score = 3524 bits (1908), Expect = 0.0
Identities = 2130/2235 (95%), Gaps = 23/2235 (1%)
Strand=Plus/Plus
Query 13 TCGTCGTCGTCATCACGCTCGATCGGTTCTCTGTTCGTCGTTTGTTT-TTCCGGTGGAGA 71
||||| |||||||||| ||||| |||||||||||||||||||||||| |||||||||| |
Sbjct 1 TCGTCATCGTCATCACTCTCGACCGGTTCTCTGTTCGTCGTTTGTTTCTTCCGGTGGAAA 60
Query 72 AAAATGGTGATGGAAATTGTGAAACCAAACACATGCATTAGAGGATGTTGCACCAGTGAA 131
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 AAAATGGTGATGGAAATTGTGAAACCAAACACCTGCATTAGAGGATGTTGCACCAGTGAA 120
Query 132 TCGATCCCTCTTCATCTCCCTTCTTCTTCCTTCACTCTTCTCTCCCCAATCGCTAAAGGA 191
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 TCGATTCCTCTTCATCTCCCTTCTTCTTCGTTCACTCTTCTCTCCCCAATCGCTAAAGGA 180
Query 192 TCAGAGAGTGTTGTTTATGAAGCGATTCTCGATGGCCGAAGAGTAGCAGCGAAGAAGCCT 251
||||||||||||||||| |||||||||||||| || |||||||||||||| || ||||||
Sbjct 181 TCAGAGAGTGTTGTTTACGAAGCGATTCTCGACGGACGAAGAGTAGCAGCCAAAAAGCCT 240
Query 252 ATCTTGTCTACTTCCGATGACCTTGACAAGTTCCACAGGAATTTGCAGCTCTCATGCAAT 311
||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 241 ATCCTGTCTACTTCCGATGACCTCGACAAGTTCCACAGGAATTTGCAGCTCTTATGCAAT 300
Query 312 CTCAATCATCCTGGTGTGGCTAAGTTACTAGCAGCACATGCGAAGCCTCCAAATTACATG 371
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTCGATCATCCTGGTGTGGCTAAGTTACTAGCAGCACATGCGAAGCCTCCAAATTACATG 360
Query 372 TTTTTCTTTGACTTCTACGAGTCTGGGACTTTAGCTGAGAAGTTACACGTCGAGGAGTGG 431
||||||||||| || |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 361 TTTTTCTTTGAGTTGTACGAGTCTGGGACCTTAGCTGAGAAGTTACACGTCGATGAGTGG 420
Query 432 TCTCCGAGTATTGATCAAGTGTTACTGATCACGCTTCACTTGGCAAAGGCATTGCAATAT 491
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 421 TCTCCGAGTATTGATCAAGTGTTAGTGATCACGCTTCACTTGGCAAAGGCATTGCAATAT 480
Query 492 CTTCACAACAACGGGATTGTTCATAGGGATGTGAAACCAGCAAATGTTCTTCTTGACGAG 551
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 481 CTTCACAACAACGGGATTGTTCATAGGGATGTGAAACCAGAAAATGTTCTTCTTGACGAG 540
Query 552 AAGTTTTTCCCATATCTGGCTGACTTTGGTTTAGCTGAATACAAGAAGAATTTGCGCGAA 611
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 541 AAGTTTTTCCCATATCTGGCCGACTTTGGTTTAGCTGAATACAAGAAGAATTTGCGCGAA 600
Query 612 GTTAATCTGCAGAATTGGAGATCGTCTGGGAAGCCAACTGGTGGATTCCACAAAAAGAAT 671
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GTTAATCTGCAGAACTGGAGATCGTCTGGGAAGCCAACTGGTGGATTCCACAAAAAGAAT 660
Query 672 ATGGTCGGAACACTTATTTACATGGCCCCTGAAATACTGAGGAAAGACATGTATACTGAG 731
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 661 ATGGTCGGAACACTTATTTACATGGCCCCTGAATTACTGAGGAAAGACATGTATACTGAG 720
Query 732 AAAGCAGATATTTATAGCTTTGGGATTTTGATCAATGAGCTTTTAACTGGAGTTGTTCCA 791
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AAATCAGATATTTATAGCTTTGGGATTTTGATCAATGAGCTTTTAACTGGAGTTGTTCCA 780
Query 792 TATACTGATCGTCGTGCAGAAGCTCAGGCTCACACTGTTTTAGAGATGAATTACACAGAA 851
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TATACTGATCTTCGTGCAGAAGCTCAGGCTCACACTGTTTTAGAGATGAATTACACAGAA 840
Query 852 CAGCAACTTACAGTTGCCATTGTGTCTTCTGGTCTGCGACCAGCTCTTGCTGAAATTGGA 911
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 841 CAGCAACTTACAGCTGCCATTGTGTCTTCTGGTCTGCGACCTGCTCTTGCTGAAACTGGA 900
Query 912 TTGCACCTTCCAAAGAGTTTGCTATCTCTGATACAAAACTGCTGGGAATCTGATCCGTCT 971
|||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 901 TTGCACCTTCCAAAGAATTTGCTATCTCTGATACAAAACTGCTGGGAAGCTGATCCTTCT 960
Query 972 AAACGACCTTCTTCGGACAATGTGGTTTTGGAACTAGAATCAATTTGGGAACAAGTGAGA 1031
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 961 AAACGACCTTCTTCGGACAATGTGGGTTTGGAACTAGAATCAATTTGGGAACAAGTGAGA 1020
Query 1032 GGAAAACAGCAAGGTCATCTCCTTGAGAAAACTTCTAATTCCCAGAGTGATACGGATGGG 1091
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 1021 GGAAAACAGCAAGGTCATCTCCTTGAGAAAACTTATAATTCCCAGAGTGATACAGATGGG 1080
Query 1092 GCGGACATCATTAAAAATTCAGGAGATTACAGGGACACCGTTAATTGGTTTAGTCAAGGG 1151
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 1081 GCGGACATCATTAAAAATTCAGGAGAGTACAGGGACACCGTTAATTGGTCTAGTCAAGGG 1140
Query 1152 GAGTGTTTATCCAAGAAATCGTCTGTTTCCACTGTCTTTGATGTGAAATTATGGTCTAGT 1211
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1141 GAGTGTTTATCCAAGAAATCGTCTGTTTCCACTGTCTTTGATGTGAAATTATGGTCTACT 1200
Query 1212 TCAACAGATGAACCTTCAAGATATGTCCCAGTAATTTCTTGTGGGTCTTTTGCAACATGT 1271
|||| |||||| |||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1201 TCAATAGATGATCCTTCAAGCTATGTCCCTGTAATTTCTTGTGGGTCTTTTGCAACATGT 1260
Query 1272 GGAAGAAGAGAATCCATGGAAGATACACACTT-CATCATACCGCACATGTGTAATGAGGA 1330
|||||||||||||||||||||||||||||||| | |||| || |||||||||||||||||
Sbjct 1261 GGAAGAAGAGAATCCATGGAAGATACACACTTTC-TCATGCCTCACATGTGTAATGAGGA 1319
Query 1331 AAGCATCCACTTATTTGCCATCTTCGATGGTCATAGAGG----CG--CTGC-A--GCTGC 1381
||||||||||||||||||||||||||||||||| ||||| | |||| | |||||
Sbjct 1320 AAGCATCCACTTATTTGCCATCTTCGATGGTCACAGAGGTATACCAACTGCTACAGCTGC 1379
Query 1382 TGAATTTTCTGCTCAAGTTTTGCCAGGACTAGTTCAAAGCTTATGTTCCACAAGCGCTGG 1441
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1380 TGAATTTTCTGCTCAAGTTTTGCCAGGACTAGTTCAAAGCTTATGTTCCACTAGCGCTGG 1439
Query 1442 CGAGGCATTGTCACAAGCATTTGTTAGGACAGATTTAGCTTTCAGACAAGAACTGGATTC 1501
|||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1440 TGAGGCATTATCACAAGCATTTGTTAGGACGGATTTAGCTTTCAGACAAGAACTTGATTC 1499
Query 1502 CCATCGTCAGTCAAAAAGGGTGAGTCAGAAAGACTGGCATCCTGGTTGTACTGCTATAGC 1561
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1500 CCATCGTCAATCAAAAAGGGTGAGTCAGAAAGACTGCCATCCTGGTTGTACTGCTATAGC 1559
Query 1562 CTCTCTCCTAGTAGAGAATAAGCTTTTCGTTGCGAATGTTGGTGACTCCAGGGCAATTTT 1621
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1560 CTCTCTCCTAGTAGAGAATAAGCTTTTCGTTGCAAATGTTGGTGACTCCAGGGCAATTTT 1619
Query 1622 ATGCCGCGCCGGTCACCCTTTTGCTCTAAGTAAGGCACATCTTGCAACTTGTATTGATGA 1681
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1620 ATGCCGCGCCGGCCACCCTTTTGCTCTAAGTAAGGCACATCTTGCAACCTGTATTGATGA 1679
Query 1682 AAGAAATCGTGTGATTGGAGAAGGTGGACGTATTGAATGGTTGGTTGACACATGGAGAGT 1741
|||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1680 GAGAAATCGTGTGGTTGGAGAAGGTGGGCGTATTGAATGGTTGGTTGACACATGGAGAGT 1739
Query 1742 TGCTCCTGCTGGACTTCAGGTTACTCGGTCAATAGGTGATGATGACCTGAAGCCAGCTGT 1801
|||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1740 TGCTCCTGCTGGCCTTCAGGTTACTCGGTCGATAGGAGATGATGACCTGAAGCCAGCTGT 1799
Query 1802 AACAGCAGAACCAGAGATTAGTGAGACAATTCTATCAGCTGACGATGAGTTCTTGGTAAT 1861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1800 AACAGCAGAACCAGAGATTAGTGAGACAATTCTATCAGCTGACGATGAGTTCTTGGTAAT 1859
Query 1862 GGCAAGCGACGGGCTCTGGGATGTTATGAACGATGAAGAAGTTATTGGTATAATCAGGGA 1921
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1860 GGCAAGCGACGGGCTCTGGGATGTTGTGAACGATGAAGAAGTTATTGGTATAATCAGGGA 1919
Query 1922 TACTGTAAAAGAACCTTCAATGTGTTCAAAGAGATTAGCAACTGAAGCTGCAGCACGTGG 1981
|||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||
Sbjct 1920 TACTGTAAAAGAACCTTCAATGTGTTCAAAGAGATTAGCAACCGAGGCTGCAGCGCGTGG 1979
Query 1982 TAGTGGTGACAACATCACAGTCATTGTAGTCTTCCTGCGGCCAGTGTCTACAGCCGAAAG 2041
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1980 TAGTGGTGATAACATCACAGTCATTGTAGTCTTCCTGCGGCCAGTGTCTACAGCTGAAAG 2039
Query 2042 GATCTACTAGTAGTATCCAATTCTTGCACATTATTATTCAACATTCAACTTCTTTACATA 2101
||||||||||||| |||||||||||||| || |||||||||| |||||||||||||||
Sbjct 2040 GATCTACTAGTAG---CCAATTCTTGCACAGTACTATTCAACATGCAACTTCTTTACATA 2096
Query 2102 TAAATTAATT-CATGTGTGTTATC-AAAATGAACCTTATGTTATCGTCCCACAGTATTAT 2159
||||||| || | | ||| ||| | |||||||| ||||| ||||||||||||||||||||
Sbjct 2097 TAAATTATTTTC-TCTGTATTA-CGAAAATGAAGCTTATATTATCGTCCCACAGTATTAT 2154
Query 2160 ATTTGCTCTCAACCAGAAAGTACATAGACCATGTAAACTA---G-AAACTTAACTTGAGT 2215
||||| ||||||||||||||||| |||| |||||||| || | ||||||| |||||||
Sbjct 2155 ATTTGGTCTCAACCAGAAAGTACCTAGAACATGTAAATTACAAGGAAACTTAGCTTGAGT 2214
Query 2216 GTATATACTCCTGAT 2230
|||||||||||||||
Sbjct 2215 GTATATACTCCTGAT 2229
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83950899980
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5