BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40890.1
Length=1885
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934902 jgi|Araly1|934902|scaffold_402890.1 2551 0.0
> Ahg934902 jgi|Araly1|934902|scaffold_402890.1
Length=1569
Score = 2551 bits (1381), Expect = 0.0
Identities = 1495/1551 (96%), Gaps = 4/1551 (0%)
Strand=Plus/Plus
Query 121 ATGTCGTGGTTTCTAATAGCGGTGGCGACAATCGCCGCCGTCGTATCCTACAAGCTAATC 180
||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 21 ATGTCGTGGTTTCTAATAGCGGTGGCGTTTGTCGCCGCCGTCGTATCTTACAAGCTAATC 80
Query 181 CAACGGCTAAGATACAAGTTCCCACCAGGCCCAAGCCCCAAGCCGATCGTCGGTAACCTC 240
||| |||| |||| ||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 81 CAAGGGCTGAGATTCAAGTTCCCACCAGGGCCACGCCCCAAGCCGATCGTCGGTAACCTC 140
Query 241 TACGACATAAAACCGGTCCGGTTCAGATGTTACTACGAGTGGGCTCAATCTTATGGACCA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 TACGACATAAAACCGGTCCGGTTCAGATGTTACTACGAGTGGGCTCAATCTTATGGACCA 200
Query 301 ATCATATCGGTCTGGATCGGTTCAATTCTAAACGTGGTCGTATCTAGCGCCGAGCTAGCA 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 201 ATCATATCGGTCTGGATCGGTTCAATTCTAAACGTCGTCGTATCTAGCGCCGAGCTAGCA 260
Query 361 AAAGAAGTTC-TGAAAGAACACGACCAGAAACTCGCCGACCGGCACCGGAACAGATCGAC 419
||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 261 AAAGAAG-TCTTGAAAGAACACGACCAGAAACTCGCCGACCGGCACCGGAACAGATCAAC 319
Query 420 GGAAGCATTTAGCCGCAACGGTCAGGATCTTATATGGGCCGATTATGGGCCTCATTACGT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 GGAAGCATTTAGCCGCAACGGTCAGGATCTTATATGGGCCGATTATGGGCCTCATTACGT 379
Query 480 GAAGGTGAGAAAAGTTTGCACGCTTGAGCTCTTCACACCGAAACGACTCGAGTCTCTCAG 539
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 380 GAAGGTGAGAAAAGTTTGCACGCTTGAGCTCTTCACACCTAAACGACTCGAGTCTCTCAG 439
Query 540 ACCTATCCGTGAAGATGAAGTCACCGCCATGGTTGAATCCGTCTTCAGAGACTGTAACCT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 ACCTATCCGTGAAGATGAAGTCACCGCCATGGTTGAATCCGTCTTCAGAGACTGTAACCT 499
Query 600 TCCTGAAAACAGAGCAAAAGGTTTACAACTGAGGAAGTACTTAGGAGCGGTTGCGTTCAA 659
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 500 TCCTGAAAACAGAGCAAAAGGTTTACAACTGCGGAAGTACTTAGGAGCGGTTGCGTTCAA 559
Query 660 CAACATAACGCGGCTAGCCTTTGGGAAGCGTTTTATGAACGCTGAAGGTGTTGTGGACGA 719
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 560 CAACATAACGCGGCTAGCCTTTGGGAAGCGTTTTATGAACGCGGAAGGTGTTGTGGACGA 619
Query 720 GCAAGGGCTTGAGTTCAAGGCCATAGTATCCAACGGTCTGAAGCTAGGTGCTTCACTGTC 779
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 620 TCAAGGGCTTGAATTCAAGGCCATAGTATCCAACGGTCTGAAGCTAGGTGCTTCACTATC 679
Query 780 AATAGCTGAACACATCCCGTGGCTCAGGTGGATGTTTCCGGCTGATGAGAAGGCGTTTGC 839
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 680 GATAGCTGAACATATCCCGTGGCTCAGGTGGATGTTTCCGGCCGATGAGAAGGCGTTTGC 739
Query 840 TGAGCACGGGGCTCGTCGTGACCGCCTCACTCGAGCTATCATGGAGGAGCATACTTTGGC 899
|||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||
Sbjct 740 TGAGCACGGGGCTCGTCGCGACCGCCTCACGAGAGCTATCATGGAGGAGCACACTTTGGC 799
Query 900 CCGTCAAAAGTCTAGTGGAGCGAAACAGCATTTCGTTGATGCGTTGCTAACGTTGAAGGA 959
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 800 CCGTCAAAAGTCTAGTGGAGCGAAACAGCATTTCGTTGATGCGTTGCTTACGTTGAAGGA 859
Query 960 TCAGTATGATCTTAGTGAGGATACTATCATTGGTCTTCTATGGGATATGATCACGGCAGG 1019
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 860 TCAGTATGATCTCAGTGAGGATACTATCATTGGTCTTCTATGGGATATGATCACGGCAGG 919
Query 1020 GATGGACACGACAGCGATAACAGCGGAATGGGCGATGGCGGAAATGATCAAGAATCCAAG 1079
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 920 GATGGACACGACAGCGATAACAGCGGAGTGGGCGATGGCGGAAATGATCAAGAATCCAAG 979
Query 1080 AGTGCAACAAAAAGTGCAAGAAGAGTTCGACAGAGTGGTTGGACTTGACCGGATCTTAAC 1139
||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 980 AGTACAACAAAAGGTGCAAGAAGAGTTCGACCGAGTGGTTGGACTTGACCGGATCTTAAC 1039
Query 1140 CGAGGCAGATTTCTCCCGCTTACCTTACTTGCAATGCGTGGTGAAAGAGTCATTCAGGCT 1199
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1040 CGAGCCAGATTTCTCCCGCTTACCTTACTTGCAATGCGTGGTGAAAGAGTCATTCAGGTT 1099
Query 1200 GCATCCTCCAACGCCTCTAATGCTACCTCACCGAAGCAACGCAGATGTCAAGATCGGAGG 1259
||| ||||| |||||||| ||||| ||||||||| ||||||||||||||||||||| ||
Sbjct 1100 GCACCCTCCGACGCCTCTTATGCTCCCTCACCGATCCAACGCAGATGTCAAGATCGGTGG 1159
Query 1260 CTATGATATTCCCAAAGGATCAAACGTTCATGTGAATGTGTGGGCTGTGGCTAGAGACCC 1319
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1160 CTATGATATTCCCAAAGGATCAAACGTTCATGTGAATGTTTGGGCTGTGGCTAGAGACCC 1219
Query 1320 GGCTGTATGGAAAAATCCATTTGAGTTTAGACCAGAGAGATTCTTGGAAGAAGATGTTGA 1379
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1220 GGCTGTATGGAAAAATCCATTAGAGTTTAGACCAGAGAGATTCTTGGAAGAAGATGTTGA 1279
Query 1380 CATGAAGGGTCATGATTTTAGGCTGCTTCCGTTTGGAGCTGGAAGACGGGTTTGTCCCGG 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1280 CATGAAGGGTCATGATTTTAGGCTGCTTCCGTTTGGAGCTGGAAGACGGGTTTGTCCCGG 1339
Query 1440 TGCACAACTTGGTATCAATTTGGTAACTTCGATGATGAGTCATTTGCTTCACCATTTTGT 1499
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1340 TGCACAACTTGGTATCAATTTGGTGACTTCGATGATGAGTCATTTGCTTCACCATTTTGT 1399
Query 1500 TTGGACACCTCCTCAAGGGACTAAACCGGAGGAGATTGACATGTCTGAAAACCCTGGACT 1559
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1400 TTGGACACCTCCTCAAGGGACTAAACCGGAGGATATTGACATGTCTGAAAACCCTGGACT 1459
Query 1560 CGTTACTTACATGCGTACCCCTGTGCAAGCGGTTGCAACGCCTCGGTTGCCTTCGGATCT 1619
|||||||||||||||||| || || ||||| ||||||||||||||||||||||||||||
Sbjct 1460 CGTTACTTACATGCGTACACCGGTTCAAGCCTTTGCAACGCCTCGGTTGCCTTCGGATCT 1519
Query 1620 GTACAAACGCGTGCCTTACGATATGTAAATGTCACTCT-GATCTACCTTTT 1669
|||||||||||||||| ||||||||||||||||||| | ||||||||||
Sbjct 1520 TTACAAACGCGTGCCTTTTGATATGTAAATGTCACTCTCG-TCTACCTTTT 1569
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70809765455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5