BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40900.1
Length=1629
Score E
Sequences producing significant alignments: (Bits) Value
Ahg321777 jgi|Araly1|321777|fgenesh1_pm.C_scaffold_4001834 1831 0.0
> Ahg321777 jgi|Araly1|321777|fgenesh1_pm.C_scaffold_4001834
Length=1206
Score = 1831 bits (991), Expect = 0.0
Identities = 1139/1207 (94%), Gaps = 23/1207 (2%)
Strand=Plus/Plus
Query 171 ATGGGATTAAGGATGTCAGAATCAGCTAAACCTTATTTTGCAATGGTCTGTCTTCAGTTC 230
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 1 ATGGGATTAAGGATGTCAGAATCAGCTAAACCTTACTTTGCAATGATCTGTCTTCAGTTC 60
Query 231 GGATACGCAGGTATGAACTTAGTAACTAAAACCGTCCTAGACCGCGGTATGAGCCATTAC 290
|||||||||||||||||| ||||||||||| ||||||| |||| ||||||||||||||||
Sbjct 61 GGATACGCAGGTATGAACCTAGTAACTAAAGCCGTCCTTGACCACGGTATGAGCCATTAC 120
Query 291 GTTCTTGTTGCATACCGCAACGCTTTTGCCACAGCCGCTATCGCACCCTTCGCTCTTCTC 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTTCTTGTTGCATACCGCAACGCTTTTGCCACAGCCGCTATCGCACCCTTCGCTCTTCTC 180
Query 351 TCCGAAAGGAAAGTGAGATCAAAGATGACGTTTCCAATATTCATGCGAATATTTCTTCTT 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCCGAAAGGAAAGTGAGATCAAAGATGACGTTTCCAATATTCATGCGAATATTTCTTCTT 240
Query 411 GCTCTTCTCGGGCCGGTGATTGATCAGAACTTATACTATATCGGTCTAAAACTCACATCA 470
|||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 241 GCTCTTCTCGGGCCTGTGATTGATCAGAACTTATACTACATCGGTCTGAAACTCACATCA 300
Query 471 CCAACGTTTTCCTCCGCCGTTAGCAACATCGTGCCTGCAATTACCATTATCCTTGCCACA 530
|| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 301 CCGACGTTTTCCACCGCCGTTAGCAACATCGTGCCTGCACTTACCATTATCCTTGCCACA 360
Query 531 CTTTTCAGGATGGAGAAAGTGGAGATGAGAAAAGTAAGATGCCTGGTAAAAGTGATGGGG 590
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 CTTTTCAGGATGGAGAAAGTGGAGATGAGAAAAGTAAGATGCCTAGTAAAAGTGATGGGG 420
Query 591 ACGTTAGTGACAGTGGTTGGATCCATATTGATGATATTCTACAAAGGTCCTTTCATTAAT 650
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ACTTTAGTGACAGTGGTTGGATCCATATTGATGATATTCTACAAAGGTCCTTTCATTAAT 480
Query 651 TTCTTCCGGTCTCACCTCACGGCCGCCTCTTCGCCGCCGACGGCTGACTATCTTAAGGCT 710
|||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 481 TTCTTCCGATCTCACCTCACCCCCGCCTCCTCGCCGCCGACGGCTGACTATCTTAAGGCT 540
Query 711 GCCGTCTTCCTACTCCTCGCTTCCCTCTCATGGGCGTCGTTCTTTGTTCTTCAGGCTGCG 770
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 541 GCCGTCTTCCTACTCCTCGCTTCCCTCTCATGGGCTTCGTTCTTTGTTCTTCAGGCTGCG 600
Query 771 ACTTTGAAGAAATACTCAGCCCATCTCTCAATGTCAACAATGGTGTGTTTCATGGGAACG 830
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 601 ACTTTGAAGAAATACTCAGCCCATCTCTCGTTGTCAACAATGGTGTGTTTCATGGGAACG 660
Query 831 TTACAGTCTTTAGCCCTAGCCTTCGTAATGGAACACAATCCTTCTGCTTTGAACATCGGT 890
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 661 TTACAGTCTTTAGCCCTAGCCTTCGTAATGGAACACAATCCTTCCGCTTTAAACATCGGT 720
Query 891 TTTGACATGAACCTTCTCGCTTCTGCCTACGCGGGAATAATGTCGTCGAGCATAGCTTAC 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TTTGACATGAACCTTCTCGCTTCTGCCTACGCGGGAATAATGTCGTCGAGCATAGCTTAC 780
Query 951 TACGTTCAAGGACTTATGATGCAGCGAAAAGGACCGGTCTTTGTCACTGCTTTTAACCCT 1010
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 781 TACGTTCAAGGACTTATGATACAGCGAAAAGGACCGGTCTTTGTCACTGCTTTTAACCCT 840
Query 1011 CTTATCGTTGTCATTGTCTCCATCATGAGCTTCTTCGTTCTCGGTCAAGGAATCTACCTT 1070
||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 841 CTTGCCGTCGTCATTGTCTCCATAATGAGCTTCTTCGTTCTCGGTCAAGGAATCTACCTT 900
Query 1071 GGAGGG---GTTA------------TT---GGAGTGGTTGTTTTGATGGTGGGAGTCTAC 1112
|||||| |||| || |||||||||||||||| || |||||| |||
Sbjct 901 GGAGGGTACGTTAACAACAACCGGGTTATTGGAGTGGTTGTTTTGACGGGGGGAGTGTAC 960
Query 1113 GCCGTGTTATGGGGCAAACATGTAGATGATGACGGCGAAGAAACACGCCATGAAGATAAC 1172
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 961 GCCGTGTTATGGGGAAAACATGTAGATGATGACGGAGAAGAAACACGCCATGAAGATAAC 1020
Query 1173 GTTGTAG---CCGTTAAGTGTTGTAGTGGCAATAATGGTCTAACGATAATGCCGAAAATC 1229
||| ||| || |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GTTTTAGAAGCCATTAATTGTTGTAGTGGCAATAATGGTCTAACGATAATGCCGAAAATC 1080
Query 1230 GACGAAGCTGATGAGGAGGATGTTGAAACCGGAAAGGCTA-CGTCGGAGAAGGAGTCGTC 1288
||||||||||||||||||||||||||||| ||||| | || || ||||||||||||||||
Sbjct 1081 GACGAAGCTGATGAGGAGGATGTTGAAACAGGAAAAG-TAACGGCGGAGAAGGAGTCGTC 1139
Query 1289 AGTTCCGGAAGTGGTGGTGGTAGTTTTTTGTAGTGAAAATGTGCATAGCGTTTCACGACC 1348
|||||||||||| |||||||| ||||||||||||| ||||||| ||| ||||||||||||
Sbjct 1140 AGTTCCGGAAGTAGTGGTGGTGGTTTTTTGTAGTGGAAATGTGGATAACGTTTCACGACC 1199
Query 1349 TAACTAG 1355
||| |||
Sbjct 1200 TAATTAG 1206
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61058662735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5