BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40910.1
Length=1523
Score E
Sequences producing significant alignments: (Bits) Value
Ahg321778 jgi|Araly1|321778|fgenesh1_pm.C_scaffold_4001835 1890 0.0
Ahg483154 jgi|Araly1|483154|fgenesh2_kg.4__2214__AT2G40920.1 172 5e-42
> Ahg321778 jgi|Araly1|321778|fgenesh1_pm.C_scaffold_4001835
Length=1350
Score = 1890 bits (1023), Expect = 0.0
Identities = 1252/1361 (92%), Gaps = 22/1361 (2%)
Strand=Plus/Plus
Query 104 ATGAAGAGAAGGAGGAGGGATCTGAAACAAGCGGCGGAGTCAGAGCAGGAGGAATGTCAG 163
||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1 ATGAAGAGAAGAAGGAGGGATTTGAAACAAGCGGCGGAGTCAGAGCAGGAGGAACGTCAG 60
Query 164 AGCGTTCCCCAGGTCGTCTCTCTCAGAGATTCCGATCAACTTCAGATAATGGATGAAAAA 223
||| || |||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 AGCATTGCCCACGTCGTCTCTCTCAGAGATTCCGATCAACTTCAGATAATGGATGTAAAA 120
Query 224 GGA-G--ACAACTCATTAGCATTGCTTCCCGCCAAACTTCCTATGCGCATGTGTAGCACA 280
||| | | ||||||||||||||| |||| ||| || ||||||| | | | | || | |
Sbjct 121 GGATGTTATAACTCATTAGCATTGTTTCCAGCCCAATTTCCTAT-CATACGAG-AG-AGA 177
Query 281 CGAGAGAGAAGAAAATACACGTGCGAGATTCCTCCGGATCTCTTGATGGAAATTGTTATG 340
|| | || |||||||| | ||||||||||||| ||||||||||||||||||||||||||
Sbjct 178 AGAAAAAGGAGAAAATATATGTGCGAGATTCCTTCGGATCTCTTGATGGAAATTGTTATG 237
Query 341 AGATTGCCAGCAAAGTCCATGGTGAGGTTCAAATGCATCTCCAAGCAGTGGTCATCTCT- 399
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 238 AGATTGCCAGCAAAGTCCATGGTGAGGTTCAAGTGCATCTCCAAGCAGTGGTCATC-CTT 296
Query 400 CATCTCTTGTCGATATTTTTGCAACAGTTTATTTACTTCTGTCACACGaaaaaaaCAACC 459
||||||||||||||||||||| ||| ||||||||||| ||||||||||| || |||||||
Sbjct 297 CATCTCTTGTCGATATTTTTGTAACCGTTTATTTACTACTGTCACACGACAACAACAACC 356
Query 460 ACATA-TACACATGTGTTTAGTGGATCACGGCGGGCAACGTGTGCTGCTATCATTATCAT 518
||| | || |||||||||||||||| || ||||||||||||||||||||||| |||||||
Sbjct 357 ACA-AGTATACATGTGTTTAGTGGACCAAGGCGGGCAACGTGTGCTGCTATCCTTATCAT 415
Query 519 CAACGTCTCCAGACAACACTTGTTATGTGGTCGACCAAGATTTGAGCCTCACAGGAATGG 578
||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||
Sbjct 416 CAACGTCTCCAGACAACACTTGTTATGTGGTCGACCAAGATTTGAGCATCACTGGGATGG 475
Query 579 GAGGCTTCTTCTTGAAT-CTTGTCCGTGGCTTGTTGTGTTTCTCAGTTAGAGAAAAGGCA 637
||||||||||||||||| || |||||||||||||||||||||||||| ||| ||||||||
Sbjct 476 GAGGCTTCTTCTTGAATGCT-GTCCGTGGCTTGTTGTGTTTCTCAGTAAGAAAAAAGGCA 534
Query 638 TGTATCTATAACCCCACCACTAGACAGCGCTTGACCTTACCCGCAATAAAATCCGACATC 697
||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 535 TGTATCTATAATCCCACCACTAGACAGCTCTTGACCTTACCCGCTATAAAATCCGACATC 594
Query 698 ATAGCTCTAA-AAGATGAAAGGAAGGATATCCGGTATTATATCGGGCACGATCCTGTTAA 756
|| |||| || ||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 595 ATTGCTC-AACAAGGTGAAAGGAAGGATATCCGGTATTATATCGGACACGATCCTGTTAA 653
Query 757 TGATCAGTACAAACTAGTCTGCACGATTGGGATATCCTCTGCATTTTTCACAAATCTAAA 816
|||||| |||||||||||||||||||||| || ||||||||||||||||| |||| ||||
Sbjct 654 TGATCAATACAAACTAGTCTGCACGATTGTGACATCCTCTGCATTTTTCAAAAATGTAAA 713
Query 817 GTCAGAGCATTGGGTCTTTGTTCTAGAAGCTGGAGGTTCGTGGAGAAAGGTTCGTAC-GC 875
||||||||||||||||||||| ||||| || |||||||| |||||||||||| || | ||
Sbjct 714 GTCAGAGCATTGGGTCTTTGTACTAGAGGCGGGAGGTTCCTGGAGAAAGGTT-GTTCCGC 772
Query 876 TGGAGAGTTACCATCCTCATGCTCCTTCCACAGTAGGACAGTTTATCAATGGATCGGTAG 935
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 773 TGGAGAATTACCATCCTCATGCTCCTGCCACAGTAGGACAGTTTATCAATGGATCGGTAG 832
Query 936 TATATTATATGGCTTGGCTTGATATGGACACTTGTGCTGTTGTGAGTTTCGACATTACGT 995
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 833 TACATTATATGGCTTGGCTTGATATGGACACTTGTGTTGTTGTGAGTTTCGACATGACGT 892
Query 996 CTGAAGAGTTGACTACCATCATAGTAACTCTAG-AGGCCGGGGATGTGGCTCTGCCTGCA 1054
|||||||||||||||||||| ||||| ||| || | ||||||||||||||||||||||||
Sbjct 893 CTGAAGAGTTGACTACCATCCTAGTACCTC-AGGAAGCCGGGGATGTGGCTCTGCCTGCA 951
Query 1055 GGTAGGATGAAGGCGGGTCTTATACAGTATCATGGGGAAATAGCTGTTTTCGATCACACC 1114
| |||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 952 GCTAGGATGAAGGCGGGTCTTATAGAGTATGATGGGAAAATAGCTGTTTTCGATCACACC 1011
Query 1115 CATCTCAAAGAAAAGT-TTCTGGTGGATTTATGGGTATTGAAAGACGCTGGGATGAAG-A 1172
|| ||||||||||||| || ||||||||||||||||||||||||||||||||| |||| |
Sbjct 1012 CACCTCAAAGAAAAGTGTT-TGGTGGATTTATGGGTATTGAAAGACGCTGGGAAGAAGGA 1070
Query 1173 AGTGGTCGAAGAAGAGGCTGGTTTTACAGCCTTGTCAAAAGCATTTAGTCCATGATGACA 1232
| |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1071 A-TGGTCGAAGAAGAGGCTGTTTTTAAAGCCTTGTCAAAAGCATTTAGTCCATGATGACA 1129
Query 1233 TTGAACTGGTCGTAAAAGGTACAACTCAAGATGGCAAGGTTATCTTGGCACCGGTAAACA 1292
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||| || |
Sbjct 1130 TTGAACTGATCGTAAAAGGTACAACTGAAGATGGCAAGGTTATCTTGGCACCGGTGAAGA 1189
Query 1293 TGTGTTCTCAATTATATATTTTGTGTTACGATATGGGAAGCAATGACCTAAGAAAGGTTG 1352
|| ||||||||| |||||| ||||||||||||||| |||||||||||| || ||||||
Sbjct 1190 TGCATTCTCAATTCTATATTCTGTGTTACGATATGGTAAGCAATGACCTGAGGAAGGTTA 1249
Query 1353 AAATCAAAGGAGTACCAGACATTTGGTTTGATAAGGAGTGCTATTTCGACTTGAAGTACT 1412
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1250 AAATCAAAGGAGTACTAGACATTTGGTTTGGTAAGGAGTGCTATTTCGACTTGAAGTACT 1309
Query 1413 CTCTGGATGAGAGTGAGGACGTCATCTACTTGGAAACTTGA 1453
|| ||||||||||||||| ||||||||||||||||||||||
Sbjct 1310 CTATGGATGAGAGTGAGGCCGTCATCTACTTGGAAACTTGA 1350
> Ahg483154 jgi|Araly1|483154|fgenesh2_kg.4__2214__AT2G40920.1
Length=1362
Score = 172 bits (93), Expect = 5e-42
Identities = 105/111 (95%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 98 AAAAAGATGAAGAGAAGGAGGAGGGATCTGAAACAAGCGGCGGAGTCAGAGCAGGAGGAA 157
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAGAGATGAAGAGAAGGAGGAGGGATCTGAAACAAGCGGCGGAGTCAGAGCAGGAGGAG 60
Query 158 TGTCAGAGCGTTCCCCAGGTCGTCTCTCTCAGAGATTCCGATCAACTTCAG 208
|||||||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct 61 TGTCAGAGAATTCCCCAGGTCGTCTCTCTCGGAGATTCCGATCAAATTCAG 111
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57021096765
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5