BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40920.1
Length=1585
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483154 jgi|Araly1|483154|fgenesh2_kg.4__2214__AT2G40920.1 1827 0.0
Ahg483156 jgi|Araly1|483156|fgenesh2_kg.4__2216__AT2G40925.1 726 0.0
Ahg321778 jgi|Araly1|321778|fgenesh1_pm.C_scaffold_4001835 161 1e-38
> Ahg483154 jgi|Araly1|483154|fgenesh2_kg.4__2214__AT2G40920.1
Length=1362
Score = 1827 bits (989), Expect = 0.0
Identities = 1232/1345 (92%), Gaps = 33/1345 (2%)
Strand=Plus/Plus
Query 147 AAAGAGATGAAGAGAAGAAGGAAGGATCTGAAACAAGCGGCGGAGTCAGAGCAGGAGGAA 206
||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAGAGATGAAGAGAAGGAGGAGGGATCTGAAACAAGCGGCGGAGTCAGAGCAGGAGGAG 60
Query 207 TGTCAGAGCATTGCCCAGGTCGTCTCTCTCGGAGATTCCGATCAAATTCAGCCGCCACCC 266
|||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 61 TGTCAGAGAATTCCCCAGGTCGTCTCTCTCGGAGATTCCGATCAAATTCAGCCGTCACCC 120
Query 267 AACAAGAAAGAAGAAGAAGATATATGTGAATACTTACTGCAGAATTTTGATCTTGATCAT 326
||||||||||||| |||| ||||||||| | ||||||||| | | || | |||| |
Sbjct 121 AACAAGAAAGAAGGAGAACATATATGTG---AGTTACTGCAGGA-TATG--CAGGATCTT 174
Query 327 GTGATGGAAATTCTTATGAGATTTCCTTTAAC-C--TCCCTGACGAGGTTCAAGTGCGTC 383
||| |||||||||| |||||||| || ||| | ||||||| ||||||||||||||||
Sbjct 175 GTGTTGGAAATTCTAATGAGATTGCC---AACACAGTCCCTGATGAGGTTCAAGTGCGTC 231
Query 384 TCTAAGCAGTGGTCATCCCTCATTTCTAGTCGATATTTTTGCAACCTTTTATATACTACG 443
|||||||| ||||||||||| |||| |||||||||||||||||||||||||| |||||||
Sbjct 232 TCTAAGCACTGGTCATCCCTTATTTTTAGTCGATATTTTTGCAACCTTTTATTTACTACG 291
Query 444 GTCACACGACAACAACCACGCCTATACATGTGTTTAAAGGATGACGGCGGGCACCGTGTA 503
|||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||
Sbjct 292 GTCACACGACAACAACCACGCCTATACATGTGTTTAGTGGATGATGGCGGGCACCGTATA 351
Query 504 CTGCTATCTATATCATCACCGTCTCGAGGCAACACTTCTT-TCGTGGTGGTCGAGCAAGA 562
||||||||||||||||||||||||| || |||||||| || | || || ||||| |||||
Sbjct 352 CTGCTATCTATATCATCACCGTCTCCAGACAACACTTGTTAT-GTCGTCGTCGACCAAGA 410
Query 563 TTTGAGCATCCCAGGGATGGGAGGCTTCTTCTTGAACGTTGTTCGTGGCTTGATGTGTTT 622
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 411 TTTGAGCATCCCAGGAATGGGAGGCTTCTTCTTGAACATTGTTCGTGGCTTGATGTGTTT 470
Query 623 CTCTCGCAGAAAAAAGGCGCGTATCTAT-A----A-C-CCCA-----GCACCAAACAACT 670
||| || || ||||||||| |||||||| | | | |||| |||||||||||||
Sbjct 471 CTCCCGTAGTAAAAAGGCGTGTATCTATAACCCCAGCACCCAGGGCCGCACCAAACAACT 530
Query 671 CTTGACCTTACCCGCCATAAAGTCCGACATTGTAGCTCAACAAGGTCAAACGAAGCATCA 730
|||||||||||| |||||||| |||||||| ||||||||||||||||||| ||||||||
Sbjct 531 CTTGACCTTACCTGCCATAAAATCCGACATCGTAGCTCAACAAGGTCAAAAGAAGCATCT 590
Query 731 TCCCCGGTATTACATCGGACACGACCCTGTTAGTGATCAATACAAACTAGTCTGCACGGT 790
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 TACCCGGTATTACATCGGACACGACCCTGTTAGTGATCAATACAAACTAGTCTGCACGGT 650
Query 791 TGCGATATCCTCGCTATTGCCACGTTTGGGTAATCTGAAGTCAGAGCACTGGGTCTTCGC 850
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 651 TGCGATATCCTCGCCATTGCCACGTTTGGCTAATCTGAAGTCAGAGCACTGGGTCTTCGC 710
Query 851 ACTAGAAGCTGGAGGTTCGTGGAAAAAGGTTGTTCCACTGGAAAATTATCGTCATCATGC 910
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 711 ACTAGAAGCTGGAGGTTCATGGAAAAAGGTTGTTCCACTGGAAAATTATCGTCATCATGC 770
Query 911 CCCTTCCACGGAAGGACGGTCTACCAGTGGATCAGTAGTGCGTTATATGGCCTGGCCTGA 970
||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 771 CCCTTCCCCGCTAGGACGGTCTACCAGTGGATCAGTAGTACGTTATATGGCCTGGCCTGA 830
Query 971 TAATTATAATTGTGTGGTTGTGAGTTTCGACATTAGGTCTGAACAGTTGACTATCATCCC 1030
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 831 TAATTATAATTGTGTGGTTGTGAGTTTCGACATTAGGTCTGAACAGATGACTATCATCCC 890
Query 1031 AGTACCTAGGGAGATC-CACCTTGACGAGGTTGTGCCTGCAGTTACGATGATGGCGGATC 1089
||||||| |||||||| ||||| | ||| |||||||||||||||||||| ||||||||
Sbjct 891 AGTACCTGGGGAGATCGCACCTC-ATGAGCATGTGCCTGCAGTTACGATGAGGGCGGATC 949
Query 1090 TTATAGAGTATGGTGGGAAGATAGCAATTTTCTATCATACAAACCTTAAAGACGAGGGTT 1149
|||||||||||||||||||||||||||| ||||||||||| |||||||| | ||||||
Sbjct 950 TTATAGAGTATGGTGGGAAGATAGCAATATTCTATCATACTTACCTTAAAAAAAAGGGTT 1009
Query 1150 CCGCGGATTTATGGGTTTTGGAAGACACTGGGAAGAGTGAATGGTCGAAAAAGACTCTGG 1209
||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1010 CCGCGTCTTTATGGGTTTTGGAAGACATTGGGAAGAATGAATGGTCGAAAAAGACTCTGG 1069
Query 1210 TTCTGCAGCCTTGTCAAAGGCATTTAGTCGAAGACATTGAATTGATCGTAAAAGGTACAA 1269
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1070 TTTTGCAGCCTTGTCAAAGGCATTTAGTCAAAGACATTGAATTGATCGTAAAAGGTACAA 1129
Query 1270 CTCAAGACGGCAAGGTGATCTTGGCACCGGTGGAGATGCATTCTCGATTCTACATTCTGT 1329
| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1130 CGCAAGACGGCAAGGTAATCTTGGCACCGTTGGAGATGCATTCTCGATTCTACATTCTGT 1189
Query 1330 ATTACAACTTGCAAAGCAATGACTTGAGAAAGGTTGAAATCAAAGGAGTACCA-GACTCT 1388
||||| ||||||||||||||||||||||||||||||||||||||||||||||| | || |
Sbjct 1190 ATTACGACTTGCAAAGCAATGACTTGAGAAAGGTTGAAATCAAAGGAGTACCACGCCT-T 1248
Query 1389 TGGT-T--TGATAAAGAATGCTATTTCGACTTGAATTCTATGGATAAGAGTGAGAGCTTC 1445
||| | | |||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1249 TGGCCTACTCATAAAGAATGCTATTTTTACTTGAATTCTATGGATGAGAGTGAGAGCTTC 1308
Query 1446 ATCTACTTGGAAACTTGACCAAGAC 1470
|||||||||||||||||||||||||
Sbjct 1309 ATCTACTTGGAAACTTGACCAAGAC 1333
> Ahg483156 jgi|Araly1|483156|fgenesh2_kg.4__2216__AT2G40925.1
Length=1209
Score = 726 bits (393), Expect = 0.0
Identities = 737/896 (82%), Gaps = 51/896 (6%)
Strand=Plus/Plus
Query 586 GCTTCTTCTTGAACGTTGTTCGTGGCTTGATGTGTTT-CTCTCGCAGAAAAAAGGCGCGT 644
||| ||||||| ||| ||||| ||||||||||||||| | | ||||| ||||||| ||
Sbjct 347 GCTACTTCTTGGACGCTGTTCCTGGCTTGATGTGTTTCCAAT-TCAGAACAAAGGCGTGT 405
Query 645 ATCTATAACCCCAGCACCAAACAACTCTTGACCTTACCCGCCATAAAGTCCGACATTGTA 704
||||||||||| |||||||||||| |||||||||||||| || |||| |||||||| |
Sbjct 406 ATCTATAACCCTAGCACCAAACAAATCTTGACCTTACCCTCCGTAAAATCCGACATCACA 465
Query 705 GCTCAACAAGGTCAAAC-GAAGCATCATCCCCGGTA--TTACATCGGACACGACCCTGTT 761
||||||||||||| ||| |||| | | ||| || || || |||| ||| ||||||
Sbjct 466 GCTCAACAAGGTC-AACTGAAG-A--GTACCCAATACGTT--ATTGGACGCGATCCTGTT 519
Query 762 AGTGATCAATACAAACTAGTCTGCACGGTTGCGATATCCTCGCTATTGCCACGTTTGGGT 821
| |||||||||||||||| ||||||| ||| ||||||||||| | || |||| |
Sbjct 520 AATGATCAATACAAACTATTCTGCACTATTGAGATATCCTCGC-AATG----GTTT--GC 572
Query 822 AATC-TGAAGTCAGAGCACTGGGTCTTCGCACTAGAAGCTGGAGGTTCGTGGAAAAAGGT 880
|| | ||| ||||||||| ||||||||| ||||||||||| ||||||| |||||||||||
Sbjct 573 AAACATGAGGTCAGAGCATTGGGTCTTCACACTAGAAGCTAGAGGTTCCTGGAAAAAGGT 632
Query 881 TGTTCCACTGGAAAATTATCGTCATCATGCCCCTTCCACGGAAGGACGGTCTA-CCAGTG 939
||||||||||| | |||||| || ||||| ||| |||| | ||||||||||| ||| ||
Sbjct 633 TGTTCCACTGGGAGATTATCATCCCCATGCTCCTGCCACAGCAGGACGGTCTATCCA-TG 691
Query 940 GATCAGTAGTGCGTTATATGGCCTGGCCTGATAAT-TATAATTGTGTGGTTGTGAGTTTC 998
| |||||| | |||| | |||||| |||| | || ||||||| |||||||||||||
Sbjct 692 G---AGTAGTACATTATCTAGCCTGGGTTGAT-TTGTACAATTGTGCGGTTGTGAGTTTC 747
Query 999 GACATTAGGTCTGAACAG-TTGACTATCATCCCAGTACCT-AGGGAGATCCACCTTGACG 1056
||||||| ||||||| || || | || | ||| | ||||| | | | || || || |
Sbjct 748 GACATTATGTCTGAAGAGATT-AATACCTTCCTATTACCTCA-GAAAAT-CA--GGGATG 802
Query 1057 AGGTTGTGCCTGCAGTTACGATGATGGCGGATCTTATAGAGTATGGTGGGAAGA-TAGCA 1115
| |||||||||| | | ||||| |||||||||||||||||||| | |||| | ||||
Sbjct 803 TGCCTGTGCCTGCACTGATGATGAAGGCGGATCTTATAGAGTATGAT-GGAAAATTAGCT 861
Query 1116 ATTTTCTATCATA-CAAACCTTAAAGACGAGGGTTCCGCGGATTTATGGGTTTTGGAAGA 1174
|||||| |||||| | ||||||||||||||||||||| |||||||||||| ||| ||||
Sbjct 862 ATTTTCAATCATAGC-TACCTTAAAGACGAGGGTTCCGTGGATTTATGGGTCTTGAAAGA 920
Query 1175 CACTGGGAAG-AGTGAATGGTCGAAAAAGACTCTGGTTCTGCAGCCTTGTCAAAGGCATT 1233
| |||||| | || ||||||| || |||| |||||| |||||||||| ||||||||||
Sbjct 921 CGCTGGGATGAAG-AAATGGTCCAATAAGAAGCTGGTTTTGCAGCCTTGCCAAAGGCATT 979
Query 1234 TAGTCGAAGACATTGAATTGATCGTAAAAGGTACAACTCAAGACGGCAAGGTGAT-CTTG 1292
||||| | |||||||| ||||||||||||||||||||||||||||||||||| || | ||
Sbjct 980 TAGTCCATGACATTGATTTGATCGTAAAAGGTACAACTCAAGACGGCAAGGTTATGC-TG 1038
Query 1293 GCACCGGTGGAGATGCATTCTCGATTCTACATTCTGTATTACA--ACT-TGCAAAGCAAT 1349
|||||| ||||||||| ||||| |||||||||||||| || || | | |||||||||||
Sbjct 1039 GCACCGTTGGAGATGCGTTCTCAATTCTACATTCTGT-TT-CATGA-TGTGCAAAGCAAT 1095
Query 1350 GACTTGAGAAAGGTTGAAATCAAAGGAGTACCA-GACTCTTGGTTTGATAAAGAATGCTA 1408
|| |||||||||||||||||||||||||| ||| | || |||||| |||||||||||||
Sbjct 1096 GATTTGAGAAAGGTTGAAATCAAAGGAGTGCCACGCCT-TTGGTTCCATAAAGAATGCTA 1154
Query 1409 TTTCGACTTGAA-TTCTATGGATAAGAGTGAGAGCTTCATCTACTTGGAAACTTGA 1463
||| |||||||| || | ||||| |||||||||||||||||||| |||||| ||||
Sbjct 1155 TTTTGACTTGAAGTT-TGTGGATGAGAGTGAGAGCTTCATCTACGTGGAAATTTGA 1209
> Ahg321778 jgi|Araly1|321778|fgenesh1_pm.C_scaffold_4001835
Length=1350
Score = 161 bits (87), Expect = 1e-38
Identities = 99/105 (94%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 153 ATGAAGAGAAGAAGGAAGGATCTGAAACAAGCGGCGGAGTCAGAGCAGGAGGAATGTCAG 212
|||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1 ATGAAGAGAAGAAGGAGGGATTTGAAACAAGCGGCGGAGTCAGAGCAGGAGGAACGTCAG 60
Query 213 AGCATTGCCCAGGTCGTCTCTCTCGGAGATTCCGATCAAATTCAG 257
||||||||||| |||||||||||| |||||||||||||| |||||
Sbjct 61 AGCATTGCCCACGTCGTCTCTCTCAGAGATTCCGATCAACTTCAG 105
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59382691955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5