BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40935.1
Length=801
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483158 jgi|Araly1|483158|fgenesh2_kg.4__2218__AT2G40935.1 1171 0.0
> Ahg483158 jgi|Araly1|483158|fgenesh2_kg.4__2218__AT2G40935.1
Length=748
Score = 1171 bits (634), Expect = 0.0
Identities = 711/748 (95%), Gaps = 5/748 (1%)
Strand=Plus/Plus
Query 21 ttttGTCTCTGCTTCTTGCTCT--GCTCTGTGGTAAATAAAGTCCTGTTCTTGATATTGG 78
|||||||||||||||||||||| ||||| ||||||||||||| | ||||||| |||||
Sbjct 1 TTTTGTCTCTGCTTCTTGCTCTAATCTCTGAGGTAAATAAAGTCTTTTTCTTGAAATTGG 60
Query 79 TGGTTTCATCAGAATTAGGATGAAAGAGAAGAAGGGTCATTACGTGCCACCATCTTATAT 138
||| |||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 61 TGGATTCAACAGAATTAGGATGCAAGAGAACAAGGGTCATTACGTGCCACCATCTTATAT 120
Query 139 TCCATTAACACAGTCAGATGCTGATACTGAAGTAGAGACCACTACTCCAAATCTGGAAAT 198
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct 121 TCCATTAACACAGTCAGATGCTGATACTGAAGTTGAGACCACTACTCCAAACCTGGAGAT 180
Query 199 TGCTGTTTCTGAAAGCACAAAAGATGATCCGAGACAATGGTCATCTGGTATATGCGCTTG 258
||||| |||||||||||||||||| |||||||||| |||||||||||||||||||| ||
Sbjct 181 TGCTGCTTCTGAAAGCACAAAAGACGATCCGAGACCGTGGTCATCTGGTATATGCGCGTG 240
Query 259 CTTCGACGATATGCAGAGCTGTTGT-GTAGGTTTGTTCTGTCCTTGTTATATCTTTGGCA 317
|||||||||||| |||||||||| | ||||||||||||||||| ||||||||||||||||
Sbjct 241 CTTCGACGATATACAGAGCTGTT-TAGTAGGTTTGTTCTGTCCATGTTATATCTTTGGCA 299
Query 318 AAAACGCAGAGCTTCTGGGGTCTGGAACATTTGCAGGACCCTGCTTAACCCATTGCATCT 377
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 300 AAAACGCAGAGCTTCTGGGGTCTGGAACATTTGCAGGACCTTGCTTAACCCATTGCATTT 359
Query 378 CCTGGGCTTTGGTCAATACCATTTGCTGCTTTGCAACTAATGGCGCATTGCTCGGTCTAC 437
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CATGGGCTTTGGTCAACACCATTTGCTGCTTTGCAACTAATGGCGCATTGCTCGGTCTAC 419
Query 438 CGGGATGCTTTGTGTCATGTTATGCTTGCGGGTACCGCAAATCATTAAGAGCCAAGTACA 497
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 420 CGGGATGCTTTGTGTCATGTTATGCTTGCGGATACCGCAAATCATTAAGAGCCAAGTACA 479
Query 498 ATTTACAGGAGGCTCCATGTGGGGATTTTGTAACACACTTCTTCTGTCACTTGTGTGCCA 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ATTTACAGGAGGCTCCATGTGGGGATTTTGTAACACACTTCTTCTGTCACTTGTGTGCCA 539
Query 558 TTTGCCAAGAATACAGAGAGATTCGAGAACAAAGCAGTGGTTCATATCCTCTTGACATGA 617
||||||||||||||||||||||||||||||| ||||| || |||||||||| ||||||||
Sbjct 540 TTTGCCAAGAATACAGAGAGATTCGAGAACATAGCAGCGGCTCATATCCTCCTGACATGA 599
Query 618 AGATGGCTATCACCAATGCCCCCTTGGCTCAAACCATGGAATCAGCTAACTGATCACTTT 677
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 600 AGATGGCTATCACCAATGCCCCCTCGGCTCAAACCATGGAATCAGCTAACTGATCACTTT 659
Query 678 -GTCTCATTGAGCTTCCTTGTTTATTTTGTAGAAGACATTTTTCTTTTCATCGACTTTTG 736
||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 660 TGTCTCATTGAGTTTTCTTGTTTATTTTGTAGATGACATTTTTCTTTTCATCGACTTTTG 719
Query 737 CAATGTATTTGAGAAGTTTGATGAGTAA 764
||||||||||||||||||||||||||||
Sbjct 720 CAATGTATTTGAGAAGTTTGATGAGTAA 747
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29583383592
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5