BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40950.1
Length=2467
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934911 jgi|Araly1|934911|scaffold_402899.1 3419 0.0
Ahg324178 jgi|Araly1|324178|fgenesh1_pm.C_scaffold_5001722 440 2e-122
> Ahg934911 jgi|Araly1|934911|scaffold_402899.1
Length=2215
Score = 3419 bits (1851), Expect = 0.0
Identities = 2099/2212 (95%), Gaps = 43/2212 (2%)
Strand=Plus/Plus
Query 79 CCCTAAAACTCAGTTTCAAAATGGCTGAACCAATCACCAAGGAGCAGCCTCCTCCACCTG 138
||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 CCCTAAATCTCAGTTTCAAAATGGCTGAACCAATCACGGAGGAGCAGCCTCCTCCACCTG 60
Query 139 CTCCGGACCCTAATTCCACCTACCCTCCTCCGTCCGATTTTGATTCCATCTCGATCCCTC 198
|||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTCCTGACCCTAATTCTACCTTCCCTCCTCCGTCCGATTTTGATTCCATCTCGATCCCTC 120
Query 199 CGTTAGATGATCA----T----TT----CTCCGATCAGACTCCGATTGGTGAACTAATGT 246
|||| |||||||| | || ||||||||||||||||||||||||||| ||||
Sbjct 121 CGTTCGATGATCATTTCTACCATTCCGGCTCCGATCAGACTCCGATTGGTGAACTCATGT 180
Query 247 CCGATCTGGGGTTTCCCGATGGTGAATTCGAGCTCACTTTCGACGGTATGGACGATCTTT 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCGATCTGGGGTTTCCCGATGGTGAATTCGAGCTCACTTTCGACGGTATGGACGATCTTT 240
Query 307 AC-TTCCCTGCTGAGAATGAGTCGTTTCTCATCCCTATCAATACGTCCAATCAAGAACAG 365
|| ||||| ||||||||||||||||||||||||||| | |||||||| ||||||||||||
Sbjct 241 ACTTTCCC-GCTGAGAATGAGTCGTTTCTCATCCCTGTGAATACGTCTAATCAAGAACAG 299
Query 366 TTTGGTGATTTCACTCCGGAGTCTGAAAGTTCTGGAATTTCCGGTGATTGTATTG---TT 422
||||||||||| || |||||||||||| ||||||||||||||||||||||| ||| ||
Sbjct 300 TTTGGTGATTTTACGCCGGAGTCTGAAGGTTCTGGAATTTCCGGTGATTGTCTTGTTCTT 359
Query 423 CCCAAAGATGCAGATAAGACTATTACAACTTCCGGTTGCATTAACCGGGAATCTCCTAGA 482
||||||||||| |||||| |||||||||||||||||||||||||| | |
Sbjct 360 CCCAAAGATGCCGATAAGGGTATTACAACTTCCGGTTGCATTAACC--G---------G- 407
Query 483 GATTCCGATGATCGTTGCTCCGGTGCTGACCATAATTTAGATCTACCGACTCCATTGTCC 542
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 408 GATTCCGATGATCGTTGCTCCGGTGCTGACCGTAGTTTAGATCTACCGACTCCATTGTCG 467
Query 543 TCTCAGGGTTCGGGTAATTGCGGTTCTGATGTTTCGGAAGCTACAAATGAATCGTCGCCT 602
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 TCTCAGGGTTCCGGTAATTGCGGTTCTGATGTTTCGGAAGCTACAAATGAATCGTCGCCT 527
Query 603 AAATCGAGAAACGTTG-CGGTCGACCAGAAGGTTAAAGTGGAAGAAGCTGCTACGACGAC 661
||||| |||||||||| | |||||||||||||||||||||||||||||||| || |||||
Sbjct 528 AAATCAAGAAACGTTGTC-GTCGACCAGAAGGTTAAAGTGGAAGAAGCTGCCACTACGAC 586
Query 662 GACGT-CTATTACCAAGAGGAAGAAAGAGATCGATGAGGATTTGACTGACGAGTCTAGGA 720
| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 GTC-TATTATTACCAAGAGGAAGAAAGAGATCGATGAGGATTTGACTGACGAGTCTAGGA 645
Query 721 ACAGTAAGTACAGGAGATCGGGAGAGGATGCTGACGCTAGTGCTGTTACCGGTGAAGAAG 780
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 646 ACAGTAAGTACAGGAGATCAGGAGAGGATGCAGACGCTAGTGCTGTTACCGGTGAAGAAG 705
Query 781 ATGAGAAAAAGAGAGCTAGACTCATGAGAAACCGTGAAAGTGCTCAGCTTTCTAGGCAGA 840
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 ATGAGAAAAAGAAAGCTAGACTCATGAGAAACCGTGAAAGTGCTCAGCTTTCTAGGCAGA 765
Query 841 GGAAGAAGCATTACGTCGAGGAGCTTGAAGAAAAGGTTAGGAATATGCATTCTACGATTA 900
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||
Sbjct 766 GGAAGAAGCATTACGTCGAGGAGCTGGAAGAGAAGGTTAGGAATATGCATTCTACCATTA 825
Query 901 CGGATTTGAACGGTAAGATATCGTATTTCATGGCTGAGAATGCTACTCTAAGGCAGCAAT 960
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 826 CGGATTTGAACGGTAAGATATCGTATTTCATGGCCGAGAATGCTACTCTAAGGCAGCAAT 885
Query 961 TGGGTGGCAATGGAATGTGCCCGCCGCATCTTCCACCACCTCCGATGGGAATGTATCCAC 1020
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 TGGGCGGCAATGGAATGTGCCCGCCGCATCTTCCACCACCTCCGATGGGAATGTATCCAC 945
Query 1021 CTATGGCTCCAATGCCTTATCCATGGATGCCTTGTCCTCCTTATATGGTGAAGCAACAAG 1080
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 946 CTATGGCTCCAATGCCTTATCCATGGATGCCTTGTCCGCCTTATATGGTGAAGCAACAAG 1005
Query 1081 GATCTCAAGTGCCTTTGATTCCTATTCCTAGGTTGAAACCACAGAACACCCTTGGAACAT 1140
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1006 GATCTCAAGTGCCTTTGATTCCCATTCCTAGGTTGAAGCCACAGAACACCCTTGGAACAT 1065
Query 1141 CCAAGGCTAAGAAGTCCGAGAGTAAGAAGAGTGAAGCTAAGACCAAGAAGGTGGCTAGTA 1200
|||||||||||||||| |||||||||||| ||||||||||||| |||||||| || ||||
Sbjct 1066 CCAAGGCTAAGAAGTCGGAGAGTAAGAAGGGTGAAGCTAAGACTAAGAAGGTCGCCAGTA 1125
Query 1201 TTAGTTTTCTGGGTCTTCTGTTTTGTCTATTTTTGTTTGGTGCATTAGCTCCAATTGTGA 1260
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1126 TTAGTTTTCTGGGTCTTCTGTTTTGTCTATTTTTGTTTGGTGCATTGGCTCCAATTGTGA 1185
Query 1261 ACGTTAATTATGGAGGAATTAGTGGTGCTTTTTATGGGAACTATAGATCTAATTATATTA 1320
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1186 ACGTTAATTATGGAGGAATTAGTGGTGCCTTTTATGGGAACTATAGGTCTAATTATATTA 1245
Query 1321 CTGACCAGATTTACAGTCAGCATAGGGATAGAGTTTTGGATACATCTCGTAGTGGTGCTG 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1246 CTGACCAGATTTACAGTCAGCATAGGGATAGAGTTTTGGATACATCTCGTAGTGGTGCTG 1305
Query 1381 GTACTGGGGTTTCTAATAGTAATGGGATGCATCGTGGGAGAGATTCTGATCGAGGAGCTA 1440
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1306 GTACTGGGGTTTCTAATAGTAATGGGATGCATTGTGGGAGAGATTCTGATCGAGGAGCTA 1365
Query 1441 GGAAAAATATATCTGCAACAGAGAGTTCTGTCA-CTCCTGGAAATGGTAGTGAGCCTCTA 1499
||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||
Sbjct 1366 GGAAAAATATATCTGCAACAGAGAGCTCTGT-ACCTCCTGGAAATGGTAGTGAGCCTCTA 1424
Query 1500 GTTGCATCACTCTTTGTTCCGAGGAATGACAAGCTTGTGAAGATAGATGGGAATTTGATT 1559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1425 GTTGCATCACTCTTTGTTCCGAGGAATGACAAGCTTGTGAAGATAGATGGGAATTTGATT 1484
Query 1560 ATCAATTCTATATTGGCGAGTGAGAAAGCCGTGGCTTCGAGAAAGGCTTCTGAATCAAAG 1619
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 1485 ATCAATTCTATATTGGCGAGTGAGAAAGCTGTGGCTTCGCGAAAGGCTTCTGAATCAAAG 1544
Query 1620 GAGAGGAAAGCTGACTTGATGATCTCTAAAGATTATACCCCTGCACTGCCTCTACCTGAC 1679
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1545 GAGAGGAAAGCTGACTTGGTGATCTCTAAAGATTATTCCCCTGCACTGCCTCTACCTGAT 1604
Query 1680 GTGGGAAGGACAGAGGA-ATTGGCTAAGCATCTCTATAGATCTAAGGCTGAAAAACAGAA 1738
||||||| ||| ||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1605 GTGGGAATGACCGAGGATAT-GGCTAAGCATCTCTATAGATCTAAGGCTGAAAAACAGAA 1663
Query 1739 AGCTCTATCCTCTGGCTCTGCTGATACTCTGAAAGACCAAGTCAAAACAAAAGCAGCCAA 1798
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1664 AGCTCTATCCTCTGGCTCTGCTGATACTCTGAAAGACCAATTCAAAACAAAAGCAGCCAA 1723
Query 1799 CGGTGAAATGCAGCAATGGTTCCGTGAAGGTGTTGCAGGTCCCATGTTTAGTTCAGGGAT 1858
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1724 CGGTGAAATGCAGCAATGGTTCCGTGAAGGTGTTGCAGGGCCCATGTTTAGTTCAGGGAT 1783
Query 1859 GTGCACTGAAGTGTTTCAGTTTGATGTATCCTCAACCTCTGGAGCCATCATTCCTGCAGC 1918
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1784 GTGCACTGAAGTGTTTCAGTTTGATGTATCCTCAACCTCTGGAGCCATCATTCCTGCATC 1843
Query 1919 TAC--CAAC----GTCTCTGCTGAACACGGTAAGAACACCACAGACACACACAAGCAACA 1972
| | |||| |||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 1844 TCCAGCAACCAATGTCTCTGCTGAACACGGTAAGAACACCACAGAGACACACAAGCAAAA 1903
Query 1973 GAACAGAAGAATCCTTCGTGGTCTTCCCATTCCACTCCCAGGATCAGATTTTAACCTCAC 2032
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1904 GAACAGAAGAATCCTTCGTGGTCTTCCCATTCCACTCCCGGGATCAGATTTTAACCTCAC 1963
Query 2033 GAAAGAGCACCAAAGAAACAGCAGTAGCAAAGAAATCAAGCCTGCTTCATCAATGGTTGT 2092
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1964 CAAAGAGCACCAGAGAAACAGCAGTAGCAAAGAAATAAAGCCTGCTTCATCAATGGTTGT 2023
Query 2093 ATCTGTGCTTGTTGATCCCAGAGAAGGAGGTGATGGAGATATAGATGGGATGATTGGGGG 2152
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2024 ATCTGTGCTTGTTGATCCCAGAGAAGGCGGTGATGGAGATATAGATGGGATGATTGGGGG 2083
Query 2153 ACCAAAATCACTGTCTCGAGTTTTTGTAGTCGTGCTTCTGGACAGTGCAAAGTATGTAAC 2212
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 2084 ACCAAAATCACTGTCTCGAGTTTTTGTGGTCGTGCTTCTTGACAGTGCAAAGTATGTAAC 2143
Query 2213 ATACTCCTGTGTCCTACCTCGATCAGGAGCTCCTCATCTTGTGACCACTTGA 2264
|||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2144 ATACTCTTGTGTCCTACCTCGATCAGGAGCTCCTCATCTTGTGACAACTTGA 2195
> Ahg324178 jgi|Araly1|324178|fgenesh1_pm.C_scaffold_5001722
Length=1899
Score = 440 bits (238), Expect = 2e-122
Identities = 686/889 (77%), Gaps = 83/889 (9%)
Strand=Plus/Plus
Query 1410 CATCGTGGGAGAGATTCTGATCGAGGAGCTAG-GAA-AAATATATCTGCA-ACAGAG-AG 1465
||| ||||| ||| |||||||| ||||| | | ||| ||| |||||| | |||||| |
Sbjct 1060 CATTGTGGGGGAGGTTCTGATCAAGGAG-T-GAGAAGAAACGTATCTG-AGACAGAGAAC 1116
Query 1466 TTCTGTCACTCCTGGAAATGGTAGTGAGCCTCTAGTTGCATCACTCTTTGTTCCGAGGAA 1525
|| | | ||||| ||||| ||||||| |||||||||||||| || ||||| ||||||||
Sbjct 1117 TTGGGGC-CTCCTCGAAATAGTAGTGAACCTCTAGTTGCATCGCTATTTGTCCCGAGGAA 1175
Query 1526 TGACAAGCTTGTGAAGATAGATGGGAATTTGATTA-TCAATTCTATATTGGCGAGTGAGA 1584
||| |||||||| ||||| ||||| |||||||||| || ||||| | |||||||| ||||
Sbjct 1176 TGAAAAGCTTGTCAAGATCGATGGAAATTTGATTATTC-ATTCTGTTTTGGCGAGCGAGA 1234
Query 1585 AAGCC-GTGGCTTCGAGAAAGGCTTCTGAATCAAAGGAGAGG--AAAGCTGACTTGATGA 1641
||||| | || ||| |||| | ||| |||| || ||| ||||| | | | |
Sbjct 1235 AAGCCAG-GGATTC-TGAAA--C-AAAGAA-CAAA-GA-AGGCAAAAGCGGTGTAG-CAA 1285
Query 1642 -T-CT-CTAAA--GATTA-TACCCCTGCACTGCCTCTACCTGACGT-GGGAAGGA-CAGA 1693
| || ||||| ||||| | | |||||| ||||| |||||||| | ||||| ||
Sbjct 1286 CTACTACTAAAGGGATTATTTCTCCTGCAATGCCTTTACCTGAC-TCCACAAGGACCA-T 1343
Query 1694 GGAAT-TGGCTAAGCATCTCTATAGATC-TAAGGCTGAAAAACAGAAAGCTCTATCCTCT 1751
|| || || ||||||| |||||||| | || || | ||| | | || ||| |||
Sbjct 1344 GG-ATATGTCTAAGCACCTCTATAG--CGAAACGCCG-AAAGC--CCTG-TC-ATCTTCT 1395
Query 1752 GGCTCTGCTGATACTCTGAAAGACCAAGTCAAAACAA-AAGCAGCCAACGGTGAAATGCA 1810
|| |||| |||| || ||||||| ||| ||||| || || ||||||| ||| |||||||
Sbjct 1396 GGTTCTGATGATGCTTTGAAAGAACAACTCAAATTAACAA-CAGCCAATGGTCAAATGCA 1454
Query 1811 GCAATGGTTCCGTGAAGGTGTTGCAGGTCCCATGTTTAGTTCAGGGATGTGCACTGAAGT 1870
||||||||| ||||||||||||||||| || ||||| ||||| ||||||||||| |||||
Sbjct 1455 GCAATGGTTTCGTGAAGGTGTTGCAGGGCCAATGTTCAGTTCGGGGATGTGCACCGAAGT 1514
Query 1871 GTTTCAGTTTGATGTATCCTCAACCTCTGGAGCCATCATTCCTGCAGCTACCAACGTCTC 1930
||||||||||||||| ||||||||||| ||| ||||||||||||| | || || | |
Sbjct 1515 GTTTCAGTTTGATGTCTCCTCAACCTCAGGATCCATCATTCCTGC--TTCCCCAC--C-C 1569
Query 1931 TGCTGAACACGGTAAGAACACCACAGACACACACAA---GCAACAGAACAGAAGAATCCT 1987
||||||| |||| | | ||| || || ||||| | || ||||||||||||||||
Sbjct 1570 -ACTGAACAATCTAAG-A-A-CACTGATACTCACAAGGGGAAAAAGAACAGAAGAATCCT 1625
Query 1988 TCGTGGTCTTCCCATTCCACTCCCAGGATCAGATTTTAACCTCACGAAAGAGC---A--- 2041
| |||| | | || | ||| ||| |||||||| || || ||||| | |
Sbjct 1626 CCATGGTGGT--C-TT----T--CAGCATCTGATTTTAATCTTACCAAAGATCATAAGTG 1676
Query 2042 C-CAAAG-AAACAGCAGTAGCAAAGAAATCAAGCCTGCTTCATCAATGGTTGTATCTGTG 2099
| | || ||| || | | | | || | ||||||||| |||||||||||||||||||||
Sbjct 1677 CTC-TAGCAAAGAGAACT-TCCAGGACACCAAGCCTGCCTCATCAATGGTTGTATCTGTG 1734
Query 2100 CTTGTTGATCCCAGAGAAGGAGGTGATGGAGATATAGATGGGATGATTGGG-GGACCAAA 2158
|||||||||||||||||||| |||||||||||||||||||||||||| ||| ||| ||||
Sbjct 1735 CTTGTTGATCCCAGAGAAGGCGGTGATGGAGATATAGATGGGATGAT-GGGAGGAACAAA 1793
Query 2159 ATCACTGTCTCGAGTTTTTGTAGTCGTGCTTCTGGAC-A-GTGCAAAGTATGTAACATAC 2216
||||||||||| |||||| ||||| ||||| ||||| | ||| || |||||||||||||
Sbjct 1794 ATCACTGTCTCCAGTTTTCATAGTCTTGCTTGTGGACGATGTG-AA-GTATGTAACATAC 1851
Query 2217 TCCTGTGTCCTACCTCGATCAGGAGCTCC-TCATCTTGTGACCACTTGA 2264
||||| | || || || ||| || ||| |||||| |||| |||||||
Sbjct 1852 TCCTGCATTCTTCCACGGCCAGAAG-TCCCTCATCTCGTGAGCACTTGA 1899
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92978288045
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5