BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G40955.1 Length=2040 Score E Sequences producing significant alignments: (Bits) Value Ahg932811 jgi|Araly1|932811|scaffold_400799.1 1411 0.0 > Ahg932811 jgi|Araly1|932811|scaffold_400799.1 Length=857 Score = 1411 bits (764), Expect = 0.0 Identities = 828/859 (96%), Gaps = 4/859 (0%) Strand=Plus/Plus Query 1105 GACGTGGCTGAGTTGTGTGAGCAGTTAACATGTGACGAGTCTCATAAACCGAAGCAAAGA 1164 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GACGTGGCTGAGTTGTGTGAGCAGTTAACATGTGACGAGTCTCATAAACCGAAGCAAAGA 60 Query 1165 CTAGCTCCAAAGTCTTGGATGTTTAAGTATAGAAGGGACCATAAGATACTACACAGCCCT 1224 ||| ||||||||||||||||||||||||||||||||||| ||| || ||||||||||||| Sbjct 61 CTATCTCCAAAGTCTTGGATGTTTAAGTATAGAAGGGACAATATGAAACTACACAGCCCT 120 Query 1225 ACTATGTCTAGGAATGTGAGAATGGTTGTTTTCAGAAAAATGGAAGCAGCAGAAAGGAGT 1284 |||||||| ||||||||||||||||| |||||||||||||||||||||| ||||| || | Sbjct 121 ACTATGTCCAGGAATGTGAGAATGGTGGTTTTCAGAAAAATGGAAGCAGAAGAAATGATT 180 Query 1285 CAACATTTGGTTACACACAGGTTTCATGTGGGTCCACTAGAAATGGATACTCAAGACTCT 1344 |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 181 CAACATTTGGTTACACACAGGTTTCATGAGGGTCCACTAGAAATGGATATTCAAGACTCT 240 Query 1345 GAAATTGGTATCA-TAGAGGTTTTAAGAAGAGTGATGATGCTGTTCCAAAACAGTATTGT 1403 ||| ||| ||||| | |||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GAAGTTGCTATCAGT-GAGGTTTTAAGAAGAGTGATGATGCTGTTCCAAAACAGTATTGT 299 Query 1404 ACAAGCCAAGATGATGGTGACAAAGAGAAAGAAAACGTTTTACAAGTCTAGGAGATTCAA 1463 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 300 ACAAGCCAAGATGATGGTGACAAAGAGAAAGAAAACGTTTTACAAGTCTAGGAGATCCAA 359 Query 1464 GTTCAAACATAGAGTTGTACCAAGAGCTTTACAATATGGTTTTGAAGTCAAAATGAAGCA 1523 ||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||| Sbjct 360 GTTCAAACATAGAGTCGCACCAAGAGCTTTACAATATGGTTTTGACGTCAAAATGAAGCA 419 Query 1524 AAAGGTT-TCTACAGAGTATCCATGTTTGTTCTTGATCGGCAAGGAGGCAGAACTTGTTC 1582 ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 AAA-GTTGTCTACAGAGTATCCATGTTTGTTCTTGATCGGCAAGGAGGCAGAACTTGTTC 478 Query 1583 ATATTTTGCTTGGGTATAGGGACGTGATGTTTAACTTGAAGAAAAAGGGGAGATTTAGAC 1642 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 ATATTTTGCTTGGGTATAGGGACGTGATGTTTAACTTGAAGAAAAAGGGGAGATTTAGAC 538 Query 1643 TCTTTCAGTCATTTTCTAAACAACTTCTCTTATGGCTGCGACATGATGCATTGCTAATAA 1702 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 539 TCTTTCAGTCATTTTCTGAACAACTTCTCTTATGGCTGCGACATGATGCATTGCTAATAA 598 Query 1703 AACCGTTTCTGCTTAGTGATGAGAGGTTCCAAATAAAGCATACATGGAGAACTAAGTTCA 1762 |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| Sbjct 599 AACCGTTTCTGCTTAGTGATGAGAGGTTCCAAATAAAGCATAAATGGAGATCTAAGTTCA 658 Query 1763 TACACTCCGTTTCATCAATTGGTGTTGGGCATTATGAATATTCTATTTGGACACAGAGTG 1822 ||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||| Sbjct 659 TACACTCAGTTTCAGCAATTGGTGTTGGGCATTATGAATATTCTATTTGGAAACAGAGTG 718 Query 1823 ACAAAGGGACGCAGCTCTTTTACAGCAGGAGATTGGTTGTTTACAAGCTTGGAAGTGAGG 1882 ||||||||||||| |||||||||| |||| ||||||||||||||||||||| |||||||| Sbjct 719 ACAAAGGGACGCAACTCTTTTACAACAGGTGATTGGTTGTTTACAAGCTTGCAAGTGAGG 778 Query 1883 CCAAGAATGTTGTAGAGGTGTCTCAACGTGTGTATCAGCTTGTTAAACTGAAATTTGCCA 1942 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 779 CCAAGAATGTTGTAGAGGTGTCTCAACGTGTGTATCAGCTTGTTAAACTGAAATTTGCCA 838 Query 1943 AAGACGAACGAAAGCTTGA 1961 ||||||||||||||||||| Sbjct 839 AAGACGAACGAAAGCTTGA 857 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76713753430 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5