BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40955.1
Length=2040
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932811 jgi|Araly1|932811|scaffold_400799.1 1411 0.0
> Ahg932811 jgi|Araly1|932811|scaffold_400799.1
Length=857
Score = 1411 bits (764), Expect = 0.0
Identities = 828/859 (96%), Gaps = 4/859 (0%)
Strand=Plus/Plus
Query 1105 GACGTGGCTGAGTTGTGTGAGCAGTTAACATGTGACGAGTCTCATAAACCGAAGCAAAGA 1164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GACGTGGCTGAGTTGTGTGAGCAGTTAACATGTGACGAGTCTCATAAACCGAAGCAAAGA 60
Query 1165 CTAGCTCCAAAGTCTTGGATGTTTAAGTATAGAAGGGACCATAAGATACTACACAGCCCT 1224
||| ||||||||||||||||||||||||||||||||||| ||| || |||||||||||||
Sbjct 61 CTATCTCCAAAGTCTTGGATGTTTAAGTATAGAAGGGACAATATGAAACTACACAGCCCT 120
Query 1225 ACTATGTCTAGGAATGTGAGAATGGTTGTTTTCAGAAAAATGGAAGCAGCAGAAAGGAGT 1284
|||||||| ||||||||||||||||| |||||||||||||||||||||| ||||| || |
Sbjct 121 ACTATGTCCAGGAATGTGAGAATGGTGGTTTTCAGAAAAATGGAAGCAGAAGAAATGATT 180
Query 1285 CAACATTTGGTTACACACAGGTTTCATGTGGGTCCACTAGAAATGGATACTCAAGACTCT 1344
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 181 CAACATTTGGTTACACACAGGTTTCATGAGGGTCCACTAGAAATGGATATTCAAGACTCT 240
Query 1345 GAAATTGGTATCA-TAGAGGTTTTAAGAAGAGTGATGATGCTGTTCCAAAACAGTATTGT 1403
||| ||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAAGTTGCTATCAGT-GAGGTTTTAAGAAGAGTGATGATGCTGTTCCAAAACAGTATTGT 299
Query 1404 ACAAGCCAAGATGATGGTGACAAAGAGAAAGAAAACGTTTTACAAGTCTAGGAGATTCAA 1463
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 300 ACAAGCCAAGATGATGGTGACAAAGAGAAAGAAAACGTTTTACAAGTCTAGGAGATCCAA 359
Query 1464 GTTCAAACATAGAGTTGTACCAAGAGCTTTACAATATGGTTTTGAAGTCAAAATGAAGCA 1523
||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 360 GTTCAAACATAGAGTCGCACCAAGAGCTTTACAATATGGTTTTGACGTCAAAATGAAGCA 419
Query 1524 AAAGGTT-TCTACAGAGTATCCATGTTTGTTCTTGATCGGCAAGGAGGCAGAACTTGTTC 1582
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AAA-GTTGTCTACAGAGTATCCATGTTTGTTCTTGATCGGCAAGGAGGCAGAACTTGTTC 478
Query 1583 ATATTTTGCTTGGGTATAGGGACGTGATGTTTAACTTGAAGAAAAAGGGGAGATTTAGAC 1642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 ATATTTTGCTTGGGTATAGGGACGTGATGTTTAACTTGAAGAAAAAGGGGAGATTTAGAC 538
Query 1643 TCTTTCAGTCATTTTCTAAACAACTTCTCTTATGGCTGCGACATGATGCATTGCTAATAA 1702
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TCTTTCAGTCATTTTCTGAACAACTTCTCTTATGGCTGCGACATGATGCATTGCTAATAA 598
Query 1703 AACCGTTTCTGCTTAGTGATGAGAGGTTCCAAATAAAGCATACATGGAGAACTAAGTTCA 1762
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 599 AACCGTTTCTGCTTAGTGATGAGAGGTTCCAAATAAAGCATAAATGGAGATCTAAGTTCA 658
Query 1763 TACACTCCGTTTCATCAATTGGTGTTGGGCATTATGAATATTCTATTTGGACACAGAGTG 1822
||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 659 TACACTCAGTTTCAGCAATTGGTGTTGGGCATTATGAATATTCTATTTGGAAACAGAGTG 718
Query 1823 ACAAAGGGACGCAGCTCTTTTACAGCAGGAGATTGGTTGTTTACAAGCTTGGAAGTGAGG 1882
||||||||||||| |||||||||| |||| ||||||||||||||||||||| ||||||||
Sbjct 719 ACAAAGGGACGCAACTCTTTTACAACAGGTGATTGGTTGTTTACAAGCTTGCAAGTGAGG 778
Query 1883 CCAAGAATGTTGTAGAGGTGTCTCAACGTGTGTATCAGCTTGTTAAACTGAAATTTGCCA 1942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 CCAAGAATGTTGTAGAGGTGTCTCAACGTGTGTATCAGCTTGTTAAACTGAAATTTGCCA 838
Query 1943 AAGACGAACGAAAGCTTGA 1961
|||||||||||||||||||
Sbjct 839 AAGACGAACGAAAGCTTGA 857
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76713753430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5