BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40970.1
Length=1146
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934913 jgi|Araly1|934913|scaffold_402901.1 1118 0.0
> Ahg934913 jgi|Araly1|934913|scaffold_402901.1
Length=790
Score = 1118 bits (605), Expect = 0.0
Identities = 734/795 (92%), Gaps = 14/795 (2%)
Strand=Plus/Plus
Query 158 TCACTATCACCGCAGCTAGAATGAGAGAAGATAATCCAAATTGGTTCCTTAGATGGGAAG 217
|||| |||||||| |||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 TCACAATCACCGCCGCTAAAATGAGAGAAGATAATCCGAATTGGTTCCTTAGATGGGAAG 60
Query 218 AAGAGCTTCCATCTCCAGAAGAACTCATCCCTATCTCTCAAACCTTAATCACTCCTCATC 277
| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGGAGCTTCCATCGCCGGAAGAACTCATCCCTATCTCTCAAACCTTAATCACTCCTCATC 120
Query 278 TAGCTCTCGCTTTCCAAATCGGAAGTCCTAATCATCATCTCGGATCAAAGAGAACCACCG 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TAGCTCTCGCTTTCCAAATCGGAAGTCCTAATCATCATCTCGGATCAAAGAGAACCACCG 180
Query 338 CGATTTATCACCAGAAGCTTCAATCC-TCCACCACTCCAACAACTCCAACTCCAACTCCT 396
||||||| ||||| ||| ||||| || ||| ||||||| || ||| ||||||||||||
Sbjct 181 CGATTTACCACCAAAAGGTTCAA-CCATCCGCCACTCCGAC---TCCGACTCCAACTCCT 236
Query 397 CCACCGATGATGATGAATTCTGATTTCGGCGGTGGCGATTCCACGGATCTTGGTTCAGGA 456
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 237 CCACCGATGATGATGAATTCTGATTTCGGCGGTGGTGATTCCACGGATCTTGGTTCAGGA 296
Query 457 TCAATAGGAGGAGAGCCAGCAAGAACGTTGAAACGGCCGCGTCTAGTGTGGACGCCTCAG 516
|| || ||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 297 TCGATCGGAGGAGAGCCAGCAAGAACGTTGAAACGACCGCGTTTAGTGTGGACGCCTCAG 356
Query 517 CTACACAAACGTTTCGTGGATGCGGTTGGACACTTAGGGATCAAAAACGCAGTTCCAAAG 576
|||||||||||||| ||||| || || ||||| |||||||||||||||||||||||||||
Sbjct 357 CTACACAAACGTTTTGTGGACGCAGTCGGACATTTAGGGATCAAAAACGCAGTTCCAAAG 416
Query 577 ACTATAATGCAGCTTATGAGCGTTGAAGGATTGACTAGAGAGAACGTTGCGAGTCATCTT 636
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 ACGATAATGCAGCTAATGAGCGTTGAAGGATTGACTAGAGAGAACGTTGCGAGTCATCTT 476
Query 637 CAGAAATATCGTCTTTACCTTAGGAGAATGCAAGGCGGGAACGGTAACGGAATCACTGGA 696
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 477 CAGAAATACCGTCTTTACCTTAGGAGAATGCAAGGCGGGAACGGTAACGGAATCTCCGGT 536
Query 697 GGACACGTCATCGTCTCTGATTCGGCTACTGATCGGCTATTTGCTAGCTCACCGGTTCCA 756
||||||||||||||||| ||||| ||||| ||||||||||| |||| ||| ||||||||
Sbjct 537 GGACACGTCATCGTCTCCGATTCCGCTACCGATCGGCTATTCGCTAACTCGCCGGTTCCC 596
Query 757 GCTC-ATTTCTTGAGCCCGGATTACTTGATGCCGCCATTAGAGCATTCGTATATGGGGAA 815
| | ||||||||||||| || |||||||||||||||||| ||||||||||| |||||||
Sbjct 597 G-TGGATTTCTTGAGCCCTGAGTACTTGATGCCGCCATTACAGCATTCGTATTTGGGGAA 655
Query 816 ACATGTGATTACGCAGCAAAACCAAGTGGTTCGTAATCTGAGGTATGAAGATTCGGAATA 875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 ACATGTGATTACGCAGCAAAACCAAGTGGTTCGTAATCTGAGGTATGAAGATTCGGAATA 715
Query 876 TGGTCATGGT-A-G-TA-T-G-AAGATGCTTAAGCTCTTCCCTGCCGGAAATTAATGAAA 929
||||||||| | | | | | ||||| ||||||||||||||||||||||||| |||||
Sbjct 716 TGGTCATGGAGATGGTGCTAGCAAGATTCTTAAGCTCTTCCCTGCCGGAAATTGATGAAT 775
Query 930 TATTT-GAATTCTTA 943
||||| ||||| |||
Sbjct 776 TATTTTGAATTGTTA 790
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42735789957
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5