BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40980.1
Length=2213
Score E
Sequences producing significant alignments: (Bits) Value
Ahg345894 jgi|Araly1|345894|fgenesh1_pg.C_scaffold_4002236 2442 0.0
> Ahg345894 jgi|Araly1|345894|fgenesh1_pg.C_scaffold_4002236
Length=2100
Score = 2442 bits (1322), Expect = 0.0
Identities = 1418/1466 (97%), Gaps = 0/1466 (0%)
Strand=Plus/Plus
Query 389 GCGAGGCTCTTTTCTATGCTGTTCGTATACTCATCGCAAGGAGTGTGAGCCGTTTAGATT 448
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 635 GCGAGGCTCTTTTCTATGCTCTCCGTATACTCATCGCAAGGAGTGTGAGCCGTTTAGATT 694
Query 449 TTTCTCAAAGCTCAAACTGTGTCTTCATTCTTCTAGTTGATTCGCAGTATGGAGGTGTTG 508
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 695 TTTCTCAAAGCTCAAACTGTGTCTTCATTCTTCTCGTTGATTCGCAGTATGGATGTGTTG 754
Query 509 TAAAAGTTGAAGGGGACGTAAATAAATTGGATTTTGACTTGAACAATGTTTATGAGTGCG 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 755 TAAAAGTTGAAGGGGACGTAAATAAATTGGATTTTGACTTGAACAATGTTTATGAGTGCG 814
Query 569 CAGCAGATTGGATAAAGAAGCATTCTAAGATAGCAGTGTCACCAGTTGACAGAATATGGA 628
||||||| ||||||||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct 815 CAGCAGACTGGATAAAGAAGCATTCCAAGATAGCAGTGTCGCCGGTTGACAGAATATGGA 874
Query 629 ACAAGCTGGGAAATGCCAACTGGGGAGACATTGGTGCTTTGCAAGTGGTGTTTGCCACTT 688
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||
Sbjct 875 ACAAGCTGGGAAATGCCAACTGGGGAGACATTGGTGCTTTACAAGTGGTATTTGCAACTT 934
Query 689 ACCATAGTATAATGCAGTACTTTGGGGCACCCAGACATTCCATTGAAGACTTAGCTGCTG 748
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||
Sbjct 935 ACCATAGTATAATGCAGTACTTTGGAGCACCTAGACATTCCATTGAAGACTTAGCAGCTG 994
Query 749 ACCATAGTTCTCGCCTTCACTCAAGACGACAGGAGAGGCAGTTGGGAGATACTAGTCTCA 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 995 ACCATAGTTCTCGCCTTCACTCAAGACGACAGGAGAGGCAGTTGGGAGATACTAGTCTCA 1054
Query 809 GTGAAAATGGTATGTTTAGGTTCCAGCAGAGTACCATGTCTCCTGAAATTGTCGAAGTTC 868
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1055 GTGAGAATGGTATGTTTAGGTTCCAGCAAAGTACCATGTCTCCTGAAATTGTCGAAGTTC 1114
Query 869 AAGAAGAATCAACCAAAATCGAGCCTGAACCTTCGATGAAACTGGAAGTTGGATCGGTTC 928
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1115 AAGAAGAATCAACCAAAATTGAGTCTGAACCTTCGATGAAACTGGAAGTTGGATCGGTTC 1174
Query 929 TATGGTTGGAGGAGTCAAACTATCAAAAAGGTTATCAGATTAACGAAATATTGACTAATG 988
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1175 TGTGGTTGGAGGAGTCAAACTATCAAAAAGGCTATCAGATTAACGAAATATTGACTAATG 1234
Query 989 GTACACTTCCTTATCATATTGCATCGCCAGTGGATGATGCAGGGAAGTCTGTGTTTCTGT 1048
||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1235 GTACACTCCCTTATCATATCGCATCGCCAGTGGACGATGCAGGGAAGTCTGTGTTTCTGT 1294
Query 1049 ATGTTGGTTCTCCTCCTTCACAGCTTGAGCCAGCTTGGGAAGACATGAACTTATGGTATC 1108
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1295 ATGTTGGTTCTCCTCCTTCACAGCTTGAGCCAGCTTGGGAAGACATGAACTTGTGGTATC 1354
Query 1109 AGGTTCAGAGACAGACTAAGATATTAAGTATAATGAAACAGAGAGGACTCTCTAGCAAAT 1168
|||| || ||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1355 AGGTCCAAAGACAAACTAAGATATTAAGTATAATGAAACAGAGAGGACTGTCTAGCAAAT 1414
Query 1169 ACCTGCCGCAGCTCCATGGGTCTGGTCGGATCATTCATCCAGGCCAATGTCAAAAACCAA 1228
|| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1415 ACTTGCCGCAGCTTCATGGGTCTGGTCGGATCATTCACCCAGGCCAATGTCAAAAACCAA 1474
Query 1229 GTTCAGGTGGACGATGTGATCATCCTTGGTGTGGAACTCCCATTCTTGTGACTACTCCTG 1288
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1475 GTTCAGGTGGACGATGCGATCATCCTTGGTGTGGAACTCCCATTCTTGTGACCACTCCTG 1534
Query 1289 TTGGCGAGACAGTAGCTGATTTGGTGAACGAGGGTCGGTTTGGTCCAGAAGAAGCTATTC 1348
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1535 TTGGCGAGACAGTAGCTGATTTGGTTAACGAGGGCCGGTTTGGTCCAGAAGAAGCTATTC 1594
Query 1349 GATGTTGCCACGATTGCTTATCTGCACTTTCTTCATCCTCTTCAGCTGGAATTCGACACG 1408
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1595 GATGTTGCCATGATTGCTTATCTGCACTTTCTTCATCCTCTTCAGCTGGAATTCGACACG 1654
Query 1409 GTGATATCCGCCCAGAAAATGTAGTTTATGTCACTTCTGGTGTAAGACATCCTTACTTTG 1468
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1655 GTGATATCCGCCCAGAAAATGTAGTTTATGTCACTTCTGGCGTAAGACATCCTTACTTTG 1714
Query 1469 TACTAATTGGTTGGGGTCACGCGGTGCTTGAGGATAGAGATCGACCCGCAATGAATCTTC 1528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1715 TACTAATTGGTTGGGGTCACGCGGTGCTTGAGGATAGAGATCGACCCGCAATGAATCTTC 1774
Query 1529 ACTTCTCCTCGACTTACGCACTCCAGGAAGGGAAACTCTGTGCTGCCTCAGATGCAGAGA 1588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1775 ACTTCTCCTCGACTTACGCACTCCAGGAAGGGAAACTCTGTGCTGCCTCAGATGCAGAGA 1834
Query 1589 GCTTGATATACATGCTTTATTTCTGTTCTGGAGACTTCCCTGAATTGGATTCAGTTGAAG 1648
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1835 GCTTGATATACATGCTTTATTTCTGTTCTGGAGACTTACCTGAATTGGATTCAGTTGAAG 1894
Query 1649 GAGCTCTTCAATGGAGAGAGACCTCTTGGTCCAAAAGATTGATTCAGCAGAAGCTCGGCG 1708
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1895 GAGCTCTTCAATGGAGAGAGACCTCTTGGTCCAAAAGATTGATTCAGCAGAAGCTCGGTG 1954
Query 1709 ATATCTCAACCGTTTTGAAAGCATTCTCTGACTATGTTGACAGTCTATGTGGGACACCTT 1768
|| ||||| ||||||| ||||| || |||||||||||||||||||||||||||||||| |
Sbjct 1955 ATGTCTCAGCCGTTTTAAAAGCGTTTTCTGACTATGTTGACAGTCTATGTGGGACACCAT 2014
Query 1769 ATCCATTAGATTACGATATTTGGTTGAGAAGATTGAAGAGGAATCTTTCAGAAGACCATG 1828
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2015 ATCCATTAGATTACGATATTTGGTTGAGAAGATTGAAGAGGAATCTTTCAGAAGATCATG 2074
Query 1829 GGAAAGAAATTGAATCTTCAGGCTAA 1854
||||||| |||||| |||||||||||
Sbjct 2075 GGAAAGAGATTGAAACTTCAGGCTAA 2100
Score = 555 bits (300), Expect = 7e-157
Identities = 362/392 (92%), Gaps = 3/392 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGGTAAATCTCCAGACCTGGAATCGATAGGGTCTGGTACAACAACAAAGAGGTCA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAAGGTAAATCTCCAGACCTGGAATCGATAGGGTCTGGTACAACAACAAAGAGGTCA 60
Query 61 AGTGTTTCATCAGGAAGTCGATCTCGTACTCGTAGAGATTTCCTTAGCAGATTCACTGAC 120
|||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 61 AGTGTTTCATCAGGGAGTCGATCTCGTACCCGTAGAGATTTCCTTAGTAGATTCACTGAC 120
Query 121 TCTGCACATTTCACTGAAAAGCTTGAAGATTGGTTTGCTTCAACATTAGAAAACTCGGCG 180
||| |||||||||||||||||||| ||||||||||||| ||||| || ||||| |||
Sbjct 121 AGTGCGCATTTCACTGAAAAGCTTGAGGATTGGTTTGCTTTGACATTGGATAACTCTGCG 180
Query 181 AGC-G-AA-GGACCGGTCTTTGATGTTCCTTTTGAGTTGGTTGAGCTTCAAAAGTTTGAT 237
| | | || ||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 ACCAGCAATGGACCAGTCTTTGATGTTCCTTTTGAGTTAGTTGAGCTTCAAAAGTTTGAT 240
Query 238 TATGCATTAGAAGGGATTTCTTTCCAGCAGCTTACTCGGATGCCAAGTCCTGTTTACGCT 297
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 241 TATGCATTGGAAGGGATTTCTTTCCAGCAGCTTACTCGGATGCCAAGTCCTATTTACGCT 300
Query 298 TCTTCGTCTAATGCTCTGGAGGCTAAGGCTTATCTAGCTATTGAGGATTTTCTACACGCC 357
|| ||||||||||| | ||||| ||| | ||||||||||| ||||||||| ||||||||
Sbjct 301 TCAACGTCTAATGCTGTTGAGGCAAAGTCATATCTAGCTATAGAGGATTTTTTACACGCC 360
Query 358 ACTGTTAAGAGCTTGTGGGAGGCGTTTTGGAG 389
||||||||||||||||||||||| ||||||||
Sbjct 361 ACTGTTAAGAGCTTGTGGGAGGCTTTTTGGAG 392
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83303365815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5