BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40990.1
Length=1236
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483165 jgi|Araly1|483165|fgenesh2_kg.4__2225__AT2G40990.1 1125 0.0
Ahg938656 jgi|Araly1|938656|scaffold_502847.1 652 0.0
> Ahg483165 jgi|Araly1|483165|fgenesh2_kg.4__2225__AT2G40990.1
Length=1104
Score = 1125 bits (609), Expect = 0.0
Identities = 655/678 (97%), Gaps = 0/678 (0%)
Strand=Plus/Plus
Query 112 AGATTTTATTGTGGAGGGAGACTAGTCTTTGGTCCAGATGCATCGTCTCTCCTTCTGACA 171
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 4 AGATTTTATTGCGGAGGGAGACTAGTCTTTGGTCCAGATGCATCTTCTCTCCTTCTGACA 63
Query 172 ACAGCTATGATTGGAGGTCCTGCTCTCACTTTCTGCATACGAATGGtttttttGATCGGA 231
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 64 ACAGCTATGATTGGAGGTCCTGCTCTCACTTTCTGCATACGAATGGCTTTTTTGATCGGG 123
Query 232 AAACGCTATCCTTTGTTCCACTCTCTTATATTGTTGGGTGCACTTTTGCTCACTGTCCTG 291
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 124 AAACGCTATCCTTTGTTCCACTCTCTTGTATTGTTGGGTGCACTTTTGCTCACTGTCTTG 183
Query 292 GATTTTACATTTCTCTTCTTAACATCATCGAGAGACCCCGGGATTATCCCTAGAAACAAA 351
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 184 GATTTTATATTTCTCTTCTTAACATCATCGAGAGATCCCGGGATTATCCCTAGAAACAAA 243
Query 352 GAAGCACCTGAAGCAGAAGGGCTTGATATGATCACTCAATCCTCAGAGTGGGTAAACAAC 411
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 244 GAAGCTCCTGAAGCAGAAGGGCTTGATATGATCACTCAATCCTCAGAATGGGTAAATAAC 303
Query 412 AAACTCGGTAATACAAAGATACCTCGAACGAAGGATATATTGGTGAATGGCTACACTGTC 471
||||||||||||||||| ||||||||||| ||||||||| |||||||||| || ||||||
Sbjct 304 AAACTCGGTAATACAAAAATACCTCGAACCAAGGATATACTGGTGAATGGTTATACTGTC 363
Query 472 AAAGTTAAATTTTGTGATACATGTTTGCTTTACCGTCCTCCTCGCGCCTCTCACTGTTCA 531
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 364 AAAGTTAAATTTTGTGATACATGTTTGCTTTACCGGCCTCCTCGCGCCTCTCACTGTTCG 423
Query 532 ATCTGTAACAACTGTGTTCAAAGGTTTGATCATCATTGTCCATGGGTTGGCCAATGCATA 591
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 ATCTGTAACAACTGTGTTCAAAGGTTTGATCATCATTGTCCATGGGTTGGCCAATGCATC 483
Query 592 GCCTTACGAAACTATCCATACTTCATCTGTTTCATATCAACTTCAACACTCCTCTGCTTG 651
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 GCTTTACGAAACTATCCGTACTTCATCTGTTTCATATCAACTTCAACACTCCTCTGCTTG 543
Query 652 TACGTCTTTGTCTTCTCATGGGTCAGTATGCTTGAGGTACACGGCAAGATGTTGTTAATG 711
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 544 TACGTCTTTGTCTTCTCATGGGTCAGTATGCTTGAGGTACACGGCAAGATGTTGCTAATG 603
Query 712 GTCATCACAAACGACTTAGTATTTGTTGTTCTCATCCTCTACTGCTTCGTCGTTGTCTGG 771
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 604 GTCATCACAAACGACTTAGTATTTGTTGTTCTCATCCTCTACTGCTTTGTCGTTGTCTGG 663
Query 772 TTTGTCGGCGGGCTCACT 789
||||||||||||||||||
Sbjct 664 TTTGTCGGCGGGCTCACT 681
Score = 595 bits (322), Expect = 2e-169
Identities = 396/428 (93%), Gaps = 19/428 (4%)
Strand=Plus/Plus
Query 823 ACAACTTATGAGAATTTCCGGTATCGGTATGACAAGAAAGAAAACCCTTATGGAAAGGGT 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 682 ACAACTTATGAGAATTTCCGGTATCGGTATGACAAGAAAGAAAACCCTTATGGAAAGGGT 741
Query 883 CTCTTCAAGAACCTATATGAGTTGTTCTTTGCCAGAATTCCACCTCCCATGATC-AACTT 941
|||||||||||||| ||||||||||||||||| ||||||||||||||||||| | |||||
Sbjct 742 CTCTTCAAGAACCTTTATGAGTTGTTCTTTGCTAGAATTCCACCTCCCATGA-CAAACTT 800
Query 942 CAGAGACTGGGCTCCAGAGGAACCTGACGAGGAGGTTGGATCCATTGCATCTGAGCTAGA 1001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 801 CAGAGACTGGGCTCCAGAGGAACCTGACGAGGAGGTTGGATCCATTGCATCTGAGCTAGA 860
Query 1002 CCGAACTTTTGGACCCCGAGGAGATAAATATGATATGGAAATGGAAATTGGCGGTTGCAA 1061
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 861 CCGAACTTTTGGACCCCGAGGAGATAAATATGATATGGAAATGGAAATTGGTGGTTGCAA 920
Query 1062 AAACAGTAAGGTCGGTTTACAACTCCATACACTGGAGTATGACAACAACAACAGCAGCGA 1121
||||||||||| |||||| | ||||| |||||||||||||||||||||||||| | ||
Sbjct 921 AAACAGTAAGGGCGGTTTGCGCCTCCAGACACTGGAGTATGACAACAACAACAG--G-GA 977
Query 1122 AGAAACTGTCAAGAAGAAAGGTGTAAG-CGAAGAAACCGC-----C-------GCGTTTT 1168
||||||||||||||||||||| || || ||||| |||||| | |||||||
Sbjct 978 AGAAACTGTCAAGAAGAAAGG-GTTAGACGAAGGAACCGCAGGGACAACTACCGCGTTTT 1036
Query 1169 ACATCCCGGGGATTCAAGAACCCGCGAATATAACAAGAAACTCGAGCATTGATGTGAGAT 1228
||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||
Sbjct 1037 ACATCCCGGGGATTCAAGAACCCACAAATATTACAAGAAACTCGAGCATTGATGTGAGAT 1096
Query 1229 CGAGGTAG 1236
||||||||
Sbjct 1097 CGAGGTAG 1104
> Ahg938656 jgi|Araly1|938656|scaffold_502847.1
Length=1057
Score = 652 bits (353), Expect = 0.0
Identities = 776/977 (79%), Gaps = 41/977 (4%)
Strand=Plus/Plus
Query 55 ATGTTTTCTCAAG-ATCATAAACCCAAGAGAATCTACCAACTCTGGCCCGGCAACAATAG 113
|||| ||||| || ||| | ||| || || ||||| ||| | ||||||| ||| ||||
Sbjct 21 ATGTCTTCTC-AGAATCCTGAACGAAAAAGGATCTATCAAGTTTGGCCCGCCAAAAATAA 79
Query 114 ATTTTATTGTGGAGGG-AGACTAGTCTTTGGTCCAGATGCATCGTCTCTCCTTCTGACAA 172
|||||| ||||| ||| |||||||| |||||||||||||||||||| || ||| |||| |
Sbjct 80 ATTTTACTGTGG-GGGAAGACTAGTGTTTGGTCCAGATGCATCGTCGCTTCTTTTGACCA 138
Query 173 CA-GCTATGATTGGAGGTCCTGCTCTCACTTTCTGCATAC-GAATGGtttttttGATCGG 230
|| | |||||||||||| || ||| ||||||||||||| | | |||| || ||||||| |
Sbjct 139 CATG-TATGATTGGAGGACCAGCTATCACTTTCTGCAT-CAGGATGGCTTATTTGATCAG 196
Query 231 AAAACGCT-ATCCTTTGTTCCACTCTCTTA-TATTGTTGGGTGCACTT-TTGCTCAC-TG 286
| || | | ||||| || || ||||||| | ||| | |||||| || || ||||| |
Sbjct 197 CCATCG-TCACCCTTTCTTTCATTCTCTTACT-TTGATCGGTGCAATTCTT-CTCACAT- 252
Query 287 TCCTGGATTTTACATTTCTCTTCTTAACATCATCGAGAGACCCCGGGATTATCCCTAGAA 346
|| ||| |||||| ||||||||||| ||||||||||||||||||||||||||||| || |
Sbjct 253 TCATGGCTTTTACTTTTCTCTTCTTGACATCATCGAGAGACCCCGGGATTATCCCAAGGA 312
Query 347 ACAAAGAAGCACCTGAAGCAGA-AGGGCTTGATATGATCACTCAATCCTCAGAGTGGGTA 405
||||||||| ||||| ||||| | || || | ||||| ||||| |||| |||||
Sbjct 313 ACAAAGAAGTGCCTGAGGCAGAGATTCCTC-ATGTCATCACCCAATCGACAGAATGGGTG 371
Query 406 AAC-AACAAACTCGGTAATACAAAGAT-ACCTCGAACGAAGGATATATTGGTGAATGGCT 463
| | |||||| | || |||| || || ||||||||| || ||| || ||||||||||||
Sbjct 372 A-CTAACAAATTAGGAAATATGAA-ATTACCTCGAACAAAAGATGTAATGGTGAATGGCT 429
Query 464 ACACTGTCAAAGTTAAATTTTGTGATACATGTTTGCTTTACCGTCCTCCTCGCGCCTCTC 523
||| || ||||| || || || ||||| ||| ||| |||||||||||||| |||| ||
Sbjct 430 TCACCGTGAAAGTGAAGTTCTGCGATACCTGTCAGCTATACCGTCCTCCTCGTGCCTTTC 489
Query 524 ACTGTTCAATCTGTAACAACTGTGTTCAAAGGTTTGATCATCATTGTCCATGGGTTGGCC 583
|||| |||||||| ||||||||||| ||||||||||||||||| ||||||||||| || |
Sbjct 490 ACTGCTCAATCTGCAACAACTGTGTCCAAAGGTTTGATCATCACTGTCCATGGGTAGGTC 549
Query 584 AATGCATAGCCTTACGAAACTATCCATACTTCATCTGTTTCATATCAACTTCAACACTCC 643
| ||||| ||||| || |||||||||| |||| |||||||| ||||| |||||||||||
Sbjct 550 AGTGCATCGCCTTGCGTAACTATCCATTCTTCGTCTGTTTCTTATCATGTTCAACACTCC 609
Query 644 TCTGCTTGTACGTCTTTGTCTTCTCATGGGTCAGTATGCTTGAGGTACACGGCAAGATGT 703
||||| | || ||||||||||||||||||||||| |||||| | || || || | || |
Sbjct 610 TCTGCATCTATGTCTTTGTCTTCTCATGGGTCAGCATGCTTAAAGTCCATGGGGA-AT-T 667
Query 704 -TGTTAATGGTCATCACAAACGACTTAGTATTTGTTGTTCTCATCCTCTACTGCTTCGTC 762
| | || || | | | |||||| |||| | |||||| |||||||||||| ||
Sbjct 668 CTATGC-TG-TCCTTGCTGATGACTTAATATTAGGTGTTCTTGGCCTCTACTGCTTTGT- 724
Query 763 GTT--GTCTGGTTTGTCGGCGGGCTCACTGTTTTCCATCT-CTACCTCATCTGCACCAAT 819
|| ||||||||||| || || || ||||| ||||| || |||||| |||||||||||
Sbjct 725 -TTCAGTCTGGTTTGTTGGTGGACTTACTGTCTTCCA-CTTCTACCTTATCTGCACCAAC 782
Query 820 CAGACAACTTATGAGAATTTCCGGTATCGGTATGACAAGAAAGAAAACCCTTATGGAAAG 879
||||| || | ||||||||| ||||| | ||||| ||||| |||||||||||| |||||
Sbjct 783 CAGACGACCTGTGAGAATTTTCGGTACCATTATGATAAGAAGGAAAACCCTTATCGAAAG 842
Query 880 GGTCTCTTCA-AGAACCT-ATATGAGTTGTTCTTTGCCAGAATTCCACCTCCCATGATCA 937
|| |||| | ||||| | | | || |||||||||| ||||| ||||| || ||| ||
Sbjct 843 GGGATCTT-AGAGAACTTCA-AGGAACTGTTCTTTGCAAGAATCCCACCACCTTTGACCA 900
Query 938 ACTTCAGAGACTGGGCTCCAGAGGAACCTGACGA-G-G-AGGTTGGATCCATTGCATCTG 994
| |||||||| ||||| ||||| ||| ||||| | | |||| |||||||| || ||||
Sbjct 901 ATTTCAGAGATTGGGCGCCAGAAGAAGAAGACGATGTGGAGGTCGGATCCATAGCCTCTG 960
Query 995 AGCTAGACCGAA-CTTT 1010
|||||| | ||| ||||
Sbjct 961 AGCTAGGCAGAAACTTT 977
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46166852487
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5