BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G41000.2

Length=889
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg321788 jgi|Araly1|321788|fgenesh1_pm.C_scaffold_4001845           682    0.0  


> Ahg321788 jgi|Araly1|321788|fgenesh1_pm.C_scaffold_4001845
Length=807

 Score =  682 bits (369),  Expect = 0.0
 Identities = 443/476 (93%), Gaps = 16/476 (3%)
 Strand=Plus/Plus

Query  247  GTTCTAGGCGTTACG-AGAAACGCGACGAAGAAGGAGGTTAAAGATGCGTTTAGGAGATT  305
            ||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||
Sbjct  256  GTTCTAGGCGTTACGAAG-AACGCGACGAAGAAGGAGGTTAAAGATGCGTTTCGGAGATT  314

Query  306  GGCGATTAAGTATCATCCGGATAAGCACGCTCAGTCTCCGGAGCATGTTCGTC-ATAACG  364
            |||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||
Sbjct  315  GGCGATTAAGTATCATCCGGATAAGCACGCCCAGTCTCCGGAGCATGTTCGTCGA-AACG  373

Query  365  CCACCGTGCGGTTTAAGCTTGTATCGGAGGCGTACGAAGTTTTGAATGATGATCTGAAAC  424
            |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct  374  CCACCGTGCGGTTTAAGCTTGTATCGGAGGCGTACGAAGTTTTGAACGATGATATGAAAC  433

Query  425  GCGCGTCTTATAACGCTGGTAGCGATTCTGATTGCTTTCGCCGTACGAGCGGTTCGTATA  484
            |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct  434  GCGCGTCTTATAACGCTGGTAGCGATTCAGATTGCTTTCGTCGTACGAGCGGTTCGTATA  493

Query  485  GTAATCCGTATGGAAATCGTGGTGGCAGAGCGCAAGGTTCTGGTTACGGTTATGGTTATG  544
            |||||||||||||||||||| |||| |||||| |   |   |||||||||||||||||  
Sbjct  494  GTAATCCGTATGGAAATCGTAGTGGTAGAGCGTA---T---GGTTACGGTTATGGTTA--  545

Query  545  GTTACTCTACGAGGAATCGTCAGGCCTCTAGCTTCAGCAGCGGGTTTGATTCGACGTTTC  604
                ||||||||||||||||||| || |||||||||||||||| |||||||| |||||||
Sbjct  546  ----CTCTACGAGGAATCGTCAGACCCCTAGCTTCAGCAGCGGATTTGATTCAACGTTTC  601

Query  605  GTTATTTGACTACGCGAGCGTTTCTATTGAATCTCGCATTAGCTGGTGGTCTGTACTTTG  664
            |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct  602  GTTATTTGACTACGCGAGCGTTTCTACTGAATCTCGCATTAGCTGGTGGTTTGTACTTTG  661

Query  665  CGTTTACTGCGATTGATACAAGCGGAGAAACACTATGGAAAATGCGTAACTCAGGG  720
            | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  662  CATTTTCTGCGATTGATACAAGCGGAGAAACACTATGGAAAATGCGTAACTCAGGG  717


 Score = 75.0 bits (40),  Expect = 9e-13
 Identities = 42/43 (98%), Gaps = 0/43 (0%)
 Strand=Plus/Plus

Query  159  AGCAGTCGCGGATCTCAATTTCAGGTGTTTGCGATTCCGATTT  201
            |||| ||||||||||||||||||||||||||||||||||||||
Sbjct  209  AGCAATCGCGGATCTCAATTTCAGGTGTTTGCGATTCCGATTT  251



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32938200288


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5