BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41010.1
Length=939
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483168 jgi|Araly1|483168|fgenesh2_kg.4__2228__AT2G41010.1 1109 0.0
> Ahg483168 jgi|Araly1|483168|fgenesh2_kg.4__2228__AT2G41010.1
Length=864
Score = 1109 bits (600), Expect = 0.0
Identities = 789/877 (90%), Gaps = 25/877 (3%)
Strand=Plus/Plus
Query 74 ATGGTGACTTCGGAGGGATTAGCAAGCGTTGATTCTTGGTTATATCGCCAAGGTTTCAAC 133
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGTGACTTCCGAGGGATTAGCAAGCGTTGATTCATGGTTATATCGCCAAGGTTTCAAC 60
Query 134 GTTGATTCATGGTTGCTTTCTGATACCTTCTCTCACGACAACGATTTGCTCGCAAGAGCT 193
||||||||||||||||| |||||| |||||||||||||||||||| ||||||| ||||||
Sbjct 61 GTTGATTCATGGTTGCTCTCTGATGCCTTCTCTCACGACAACGATCTGCTCGCCAGAGCT 120
Query 194 CTCCATACCACCGT--CA-CAGCCCCTCATACTCTCACTCCTTCCTCTGCTTTCTTCGAT 250
|| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTACATACCACCGTCACAGCAGCCCCTCATACTCTCACTCCTTCCTCTGCTTTCTTCGAT 180
Query 251 TCCTCCGCTGTTTCTCACCCTT-CTTC-C-ACTAACACACTCTCCTCTACCGTCTCCGGT 307
|| |||| ||||||||||||| || | | ||||||||||||||||||| ||||||| ||
Sbjct 181 TCAGCCGCAGTTTCTCACCCTTCCTCCACTACTAACACACTCTCCTCTAACGTCTCCTGT 240
Query 308 GCTTCTGATCCAGAAATCATCGGCGGAGGAGCTAAACGGAAACGTAACTGCCTTCTTACC 367
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGATCTGATCCAGAAATCATCGGCGGAGGAGCTAAACGGAAACGTAACTGCCTTCTTACT 300
Query 368 GACGGTAAAGCCGCCAAGCGCCGCGCTCGTGCTTCCAAGAAATCTCAGACTACTTTCATA 427
|| ||||||||| |||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 301 GAAGGTAAAGCCACCAAGCGCCGTGCTCGTGCTTCCAAGAAATCTCAGACGACTTTTATA 360
Query 428 ACGGCGGATCCGTCCAACTTTCGTCAGATGGTTCAGCAAGTGACTGGCGCCAAGTACATC 487
||||||||||||||||| ||||| |||||||||||||||||||| ||| | | |||||||
Sbjct 361 ACGGCGGATCCGTCCAATTTTCGCCAGATGGTTCAGCAAGTGACCGGCTCTAGGTACATC 420
Query 488 GATGACTCTTCTTCCTTTGGTATTTTCGATCCGATTGTCAAGCCGGAGCCGCTTAGGTTC 547
||||| | | ||||||| || || |||||||||||||||||||| |||||||||||| ||
Sbjct 421 GATGA-T-T-CTTCCTTCGGGATGTTCGATCCGATTGTCAAGCCAGAGCCGCTTAGGCTC 477
Query 548 GTTAACAAACTGCCTTGTGGTCCT-TCGGATCGATCCACGGCGGTTCCAATGCTCGACAC 606
|||||| ||||||||||||||| | |||||||||||||||||||||||||||||||| ||
Sbjct 478 GTTAACCAACTGCCTTGTGGTC-TGTCGGATCGATCCACGGCGGTTCCAATGCTCGATAC 536
Query 607 ATCAGCATTTTTGTCTAATCATCACCAGGAGAATCTCGCAGTGGGAAATGCTTTCTCCGG 666
||| ||||||||||||||||||||||||||||||||||||||||| || || | |||||
Sbjct 537 ATCGGCATTTTTGTCTAATCATCACCAGGAGAATCTCGCAGTGGGGAACGCCTACTCCGC 596
Query 667 TAAC-AGCAGCAGTGTAGGATTACCGTCGGGGAAGCCAAGTGCAACGGCCGACCCCGGTG 725
| | | | | ||| ||||||| | ||||||||||||| |||||| || ||| | ||||
Sbjct 597 TG-CTA-CGGGAGT--AGGATTAACTTCGGGGAAGCCAAATGCAACAGCGGACGCAGGTG 652
Query 726 GTTCTGCCGTGGAGTTTGATAATTACCCAACATTTCCAACGCTTGAATCGTGGAAGGTTA 785
|||||||| ||| ||||| ||||||||||||||||||||||||||||||||||| || |
Sbjct 653 TTTCTGCCGAGGATTTTGAAAATTACCCAACATTTCCAACGCTTGAATCGTGGAAAGTAA 712
Query 786 TGTGATCTGTTTCTTTCAGTCTTAGACGTAATCTTTAACTTTTTAGGTTTGTTTTCTTTG 845
|||||||| | | ||| ||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 713 TGTGATCT-TGT-TTT-AGTTTTAGACGTAATCTTTAACTTTTTAGGCTTGTTTTCTTTG 769
Query 846 CATC-CCTTCATGAATAATCTTGTTCATAGTTTTTGTTTATCGATGTAATGGATCAAATC 904
|||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 770 CATCTCCT-CATGAATAATCTTGTTCATAGTTTTTCTTTATCGATGTAATGGATCAAATC 828
Query 905 TGA-GTTCT-TTT-GACTTTAAAACTATTTAGAGGAT 938
| | | ||| ||| |||||||||| ||||||| ||||
Sbjct 829 T-ATGCTCTATTTTGACTTTAAAATTATTTAGCGGAT 864
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34844346138
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5