BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41020.1
Length=1772
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483169 jgi|Araly1|483169|fgenesh2_kg.4__2229__AT2G41020.1 2217 0.0
> Ahg483169 jgi|Araly1|483169|fgenesh2_kg.4__2229__AT2G41020.1
Length=1477
Score = 2217 bits (1200), Expect = 0.0
Identities = 1372/1454 (94%), Gaps = 16/1454 (1%)
Strand=Plus/Plus
Query 105 TTACGACGTTGAAGCTCCCTCAGTCTAAAGGATTCGGAGGTTGACGCTGAACTAAATAAT 164
||||||||||| || |||||||||||||||||||||||||| | |||||| ||||||
Sbjct 37 TTACGACGTTGTAG----CTCAGTCTAAAGGATTCGGAGGTTGAAGTTGAACTGAATAAT 92
Query 165 GGGAGAAGAGCTGCAATATCAGCAGAATGGTTCATCTGTGACATCTAATTATGGTTATGG 224
|||||||||||||||| |||||||||| | | | ||||||||||| |||||||||
Sbjct 93 GGGAGAAGAGCTGCAACATCAGCAGAA----T-AAC-CAGACATCTAATTCTGGTTATGG 146
Query 225 AAGTTCGCTTGCTTACGATCAATCTCAAGACATTGAATCTGCCGCAAACACTGCTCTTCT 284
|||||||||||| || ||||||||||||||| ||||||||||||||| || |||||||||
Sbjct 147 AAGTTCGCTTGCCTATGATCAATCTCAAGACTTTGAATCTGCCGCAACCAATGCTCTTCT 206
Query 285 CCGAGAACAAGAAATAGAAACGCAGAAGATTATACAAGGTCAAAGAGAAGCTGGGACTTC 344
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 207 CCGAGAACAAGAAATTGAAACGCAGAAGATTATACGAGGTCAAAGAGAAGCTGGGACTTC 266
Query 345 AGTAGCCGGAGACTCTAAGCATAACACTGATATTCTTCGAGATCGTGCTGACCCCAATGC 404
|||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 267 AGTAGCTGGAGACTCTGAGCATAACACTGATATTCTTCGAGATCGTTCTGACCCCAATGC 326
Query 405 TCTAAAGGAACATTTGCTAAAGTTCACTGCAAATCATAGAGCAGAAGCAGCGGCAAAGCG 464
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 327 TCTTAAGGAACATTTGCTAAAGTTCACTGCAAATCATAGAGCAGAAGCAGCGGCAAAGCG 386
Query 465 TGGTGGGAGTGTGAGTACATGCGGAGAAGGTAATGTGGATGTTGGAAACGGTTATGGTAT 524
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 TGGTGGGAGTGTCAGTACATGCGGAGAAGGTAATGTGGATGTTGGAAACGGTTATGGTAT 446
Query 525 ACCGGGTGGAGTTGCATACGCGGGTCACTCCGAGCTCAGTGGGAAGCCTGAACCTACCAA 584
|||||||||||||| |||||||| ||||| ||||||| |||||||||||||||||||||
Sbjct 447 TCCGGGTGGAGTTGCTTACGCGGGCCACTCTGAGCTCACTGGGAAGCCTGAACCTACCAA 506
Query 585 TGCTTCAAACAATTTGCCTGAATATCTCAAACAAAAATTAAAGGCCAGGGGAATTCTCAG 644
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 507 TGCTTCAAACAATTTGCCTGAATATCTCAAACAAAAATTAAGGGCCAGGGGCATTCTCAG 566
Query 645 AGATGGTGCAGGGGCTGTTACATCCAACCCA-G-AAGATACATCAGCGGTTAGTTGGAAT 702
|||||| ||||||||||| ||||||| || | ||||||||||||||||||||||||||
Sbjct 567 GGATGGTACAGGGGCTGTTTCATCCAA--CATGCAAGATACATCAGCGGTTAGTTGGAAT 624
Query 703 AGACAGGCAACTTTACCTTTTCA-GGCTAATGCAAGCACCTTACCATTAGGATGGGTAGA 761
|||||| |||||| ||||||| | ||||||||||||||| ||||||||||||||||||||
Sbjct 625 AGACAGACAACTTCACCTTTT-ACGGCTAATGCAAGCACTTTACCATTAGGATGGGTAGA 683
Query 762 TGCAAAAGATCCTGCCAGTGGTGCTACCTATTACTATAACCAGCACACTGGAACATGCCA 821
|| |||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 684 TGTAAAAGATCCTGCTAGTGGTGCTACATATTACTATAACCAGCAGACTGGAACATGCCA 743
Query 822 GTGGGAAAGGCCTGTTGAGCTTTCTTATGCCACTTCAAGTGCACCACCTGTACTTTCTAA 881
||||||||||||||||||||| |||||| |||||||||||||||||||||| | | |||
Sbjct 744 GTGGGAAAGGCCTGTTGAGCTATCTTATACCACTTCAAGTGCACCACCTGTGCCTCCTAG 803
Query 882 AGAAGAGTGGATTGAAACATTTGATGAAGCATCTGGCCATAAGTATTTCTACAATACAAG 941
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 804 AGAAGAGTGGATTGAAACACTTGATGAAGCATCTGGCCATAAGTATTTCTACAATACAAG 863
Query 942 GACACATGTGTCTCAGTGGGAACCTCCAGCTTCTTTACAGAAGCCCGCTGCCACAAACTC 1001
|||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 864 GACACATGTGTCACAGTGGGAACCTCCAGCTTCTTTACAGAAGCCTGCTCCCACAAACTC 923
Query 1002 TAACAACGCTGTTACCCAAAGTACGGCTAATGGGAAGGGGGAGCATCCTCCATCTCAGCT 1061
|||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 924 TAACAACGCTGTCACCCAAAGTACGGCTAATGGGAAGGAGGAGCATCCTCCATCTCAGAT 983
Query 1062 GCCAAGATGCAGCGGATGTGGGGGCTGGGGAGTGGGCCTTGTCCAGAGATGGGGTTATTG 1121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 984 GCCAAGATGCAGCGGATGTGGGGGCTGGGGAGTGGGCCTTGTCCAGAGATGGGGTTATTG 1043
Query 1122 TGTTCATTGTACCAGGGTTTTCAATCTCCCAGAAAAGCAATTCTTGCCAGCACATTTAAA 1181
||| || ||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1044 TGTCCACTGTACCAGGGTTTTCAATCTCCCAGAACAGCAATTCTTGCCAGCAAATTTAAA 1103
Query 1182 CCATTTCACAAATGCAGGCGATTCTGGCCAAAAGGATCCGAATCAGAGGTCCAGTTCAAA 1241
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1104 CCATTTCACAAATGCAGGAGATTCTGGCCAAAAGGATCCGAATCAGAGGTCTAGTTCAAA 1163
Query 1242 ACCTCCCATGAAAAAAGTAATAGGCAAAAAGCGTGCTCATGCCGAAGATGATGAGTTGGA 1301
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1164 ACCTCCCATGAAAAAAGTAATAGGCAAAAAGCGTGCTCATGCCGAGGATGATGAGTTGGA 1223
Query 1302 TCCAATGGACCCGAGCTCTTACTCAGATGCTCCACGGGGAGGCTGGGTTGTTGGACTGAA 1361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1224 TCCAATGGACCCGAGCTCTTACTCAGATGCTCCACGGGGAGGCTGGGTTGTTGGACTGAA 1283
Query 1362 AGGAGTACAACCGCGAGCCGCTGATACAACTGCTTCGGGTCCTCTGTTTCAACAACGACC 1421
||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 1284 AGGAGTACAACCGCGAGCCGCTGATACAACTGCCACGGGTCCTCTGTTTCAACAGCGACC 1343
Query 1422 ATATCCATCACCTGGAGCTGTTCTGAGGAGAAACGCAGAGGTGGCATCATCACAGAAGAA 1481
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1344 GTATCCATCACCTGGAGCTGTTCTGAGGAGAAACGCAGAGGTGGCATCATCGCAGAAGAA 1403
Query 1482 GAAACCAAACTCTCAGTTCACAGAAATTACAAAGAGAGGCGATGGAAGTGATGGTCTTGG 1541
||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1404 GAAACCAAACTCTCATTTCACAGAAATCACAAAGAGAGGTGATGGAAGTGATGGTCTTGG 1463
Query 1542 AGACGCAGATTGAG 1555
||||||||||||||
Sbjct 1464 AGACGCAGATTGAG 1477
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66505567770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5