BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41050.1
Length=1545
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934925 jgi|Araly1|934925|scaffold_402913.1 1908 0.0
Ahg946154 jgi|Araly1|946154|scaffold_702383.1 484 6e-136
> Ahg934925 jgi|Araly1|934925|scaffold_402913.1
Length=1183
Score = 1908 bits (1033), Expect = 0.0
Identities = 1135/1183 (96%), Gaps = 12/1183 (1%)
Strand=Plus/Plus
Query 197 GGTTTTTGGCTGTGAAGAAGATGTTTCTCCACAGCAGTTTTAGAGATGGATTGTCATTGT 256
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 GGTTTTTGGCTGTGAAGAAGATGTTTCTCCACAGCAGTTTTAGAGATGGATTGTCATTAT 60
Query 257 CTCTTGGTATCATCAGTGTTATCAGTTGGGGTGTTGCTGAGATACCTCAGATTATGACTA 316
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 61 CTCTTGGTGTCATCAGTGTTATCAGTTGGGGTGTTGCCGAGATACCTCAGATTATGACTA 120
Query 317 ATTACAGTGAGAAATCCACTGAAGGTCTCTCTATTACCTTCTTAACAACGTGGATGATTG 376
|||||||||||||||||||||||||||| |||||| |||||||||| |||||||| ||||
Sbjct 121 ATTACAGTGAGAAATCCACTGAAGGTCTATCTATTGCCTTCTTAACGACGTGGATAATTG 180
Query 377 GGGATATCTTCAATCTTCTTGGCTGCTTGATGGAACCAGCTACTCTTCCAACACAATTCT 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGGATATCTTCAATCTTCTTGGCTGCTTGATGGAACCAGCTACTCTTCCAACACAATTCT 240
Query 437 ACATGGCACTGTTGTATACAGTGACTACATCAGTTCTCTATGTTCAATCTATATATTACG 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ACATGGCACTGTTGTATACAGTGACTACATCAGTTCTCTATGTTCAATCTATATATTACG 300
Query 497 GCCATATCTACCCGCGGTTGAAAAACAGAAGAGATCAGATGGTTGAAGCAGAACGTATAT 556
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 301 GCCATATCTACTCGCGGTTGAAAAACAGAAGAAATCAGATGGTTGAAGCAGAACGTATAT 360
Query 557 CAAACATAATCAGCGATGTTAAAATTCCGGGCAGATGGAGAAATAGCTCTGATACTACTA 616
| | |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CTAGTATAAGCAGTGATGTTAAAATTCCGGGCAGATGGAGAAATAGCTCTGATACTACTA 420
Query 617 CTTGTGGTGGTCAAACCACACCTATCACTATGATTCCTGGGAGTCAACGAACTAGTTTTA 676
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 421 CTTGTGGCGGTCAAACCACACCTATCACTATGATTCCTGGGAGTCATCGAACTAGTTTTA 480
Query 677 CCGGAAGAGAACTATTTTACACGTCGGCAAGATCTTTGTCGAGTAGTCATACACCACCAG 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CCGGAAGAGAACTATTTTACACGTCGGCAAGATCTTTGTCGAGTAGTCATACACCACCAG 540
Query 737 CTGGATCTGTCTTAGCTCAGAGAATGGCTCGTGGTTACAGTGAACCAACTCTTGAAGAGC 796
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 541 CTGGATCTGTCTTAGCTCAAAGAATGGCTCGTGGTCACAGTGAACCAACTCTTGAAGAGC 600
Query 797 CCTTGCTTCCTGAGGATGTCACGC-------AT--CCT--T-CCACCAAATCATTGCTTT 844
|||||||||||||||||| ||| | || ||| | ||||||||||| ||||||
Sbjct 601 CCTTGCTTCCTGAGGATGCCACACCTCCTTCATTGCCTCCTTCCACCAAATCAATGCTTT 660
Query 845 GCGTGGTCTCGGTGTTCTTGTTTCTTGGAACATTCAACCTTCCCAATTTGCTAAGTGAAT 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GCGTGGTCTCGGTGTTCTTGTTTCTTGGAACATTCAACCTTCCCAATTTGCTAAGTGAAT 720
Query 905 CAAGAACTATGGCTTTGGGTGAGGGAGATAGAGTATTTGTAGTTCGAGCAGCAAGAAAGC 964
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 721 CAAGGACTATGGCTTTGGGTGAGAGAGATAGAGTATTTGTAGTTCGAGCAGCAAGAAAGC 780
Query 965 TTTTGCAGGTCACTAGCAGCAACGTAGCAGAACATAGCGGTGGAGAAAGCAGCAGAATTG 1024
|||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||
Sbjct 781 TTTTGCAGGTCACTAGCAACAACCTAGGAGAACATAGCGGTGGAGAAAGCAGCAGAATTG 840
Query 1025 GAATGTTTTTGGGTTGGGCAATGGCAGCCATATACATGGGTGGAAGGCTTCCCCAAATAT 1084
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 841 GAATGTTTTTGGGTTGGGCAATGGCAGCCATTTACATGGGTGGAAGGCTTCCCCAAATAT 900
Query 1085 GTCTCAATATGAGGAGAGGGCATGTTGAGGGATTGAATCCATTGATGTTCTTCTTTGCAT 1144
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GTCTCAATATGAGGAGAGGACATGTTGAGGGATTGAATCCATTGATGTTCTTCTTTGCAT 960
Query 1145 TAGTTGGCAATATGACTTATGTTGCAAGCATACTCGTGAACAGTGTCGAATGGTTAAAAC 1204
|||||||||||||||||||||||||||| ||||| || ||||| |||||||||||||||
Sbjct 961 TAGTTGGCAATATGACTTATGTTGCAAGTATACTTGTAAACAGCGTCGAATGGTTAAAAA 1020
Query 1205 TTGCACCGAATCTACCATGGCTTGTTGATGCAGGAGGATGTGTTGTGCTTGATTTTCTTA 1264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TTGCACCGAATCTACCATGGCTTGTTGATGCAGGAGGATGTGTTGTGCTTGATTTTCTTA 1080
Query 1265 TTCTGCTTCAGTTTTTCCACTTCCGCTGTCGCAAAGACAAAGATACTGACAAGAAGAAGC 1324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 TTCTGCTTCAGTTTTTCCACTTCCGCTGTCGCAAAGACAAAGATACTGACAAGAAGAAGC 1140
Query 1325 ATGAAACCGCAGAAGCTGTCTAAGGCTTGTGACTACTTCAACA 1367
||||||| |||||||| |||||||||||||||||||| |||||
Sbjct 1141 ATGAAACTGCAGAAGCGGTCTAAGGCTTGTGACTACTCCAACA 1183
> Ahg946154 jgi|Araly1|946154|scaffold_702383.1
Length=898
Score = 484 bits (262), Expect = 6e-136
Identities = 458/547 (84%), Gaps = 35/547 (6%)
Strand=Plus/Plus
Query 790 GAAGAGCCCTTGCTTCCTGAGGATGTC-ACGCATCCTTCCACCAAATC-ATTGCTTTGCG 847
||| |||| ||||||| |||||| | | | || |||||| |||||||| | |||| || |
Sbjct 345 GAACAGCCTTTGCTTCATGAGGAAG-CTAAGCGTCCTTCTACCAAATCGA-TGCTATGTG 402
Query 848 TGGTCTCGGTGTTCTTGTTTCTTGGAACATTCAACCTTCCCAATTTGCTAAGTGAATCAA 907
||||||||||||||||||||||||| | | | | || ||||||| |||||| |||||
Sbjct 403 TGGTCTCGGTGTTCTTGTTTCTTGG-A-A--C-A--TT--CAATTTGTTAAGTGGATCAA 453
Query 908 GAACTATGGCTTTGGGTGAGGGAGATAGAGTATTTGTAGTTCGAGCAGCAAGAAAGCTTT 967
||| ||||| |||| | ||| ||||||||| |||| |||| ||| ||||||||||||||
Sbjct 454 GAAGTATGGATTTGAGAGAGAAAGATAGAGTGTTTGCAGTTGGAGGAGCAAGAAAGCTTT 513
Query 968 TGCAGGTCACTAGCAGCAACGTAGCAGAACATAGCGGTGGAGAAAGCAGCAGA-ATTGGA 1026
|| ||||| ||||| | || ||| || |||||||| ||| || || |||
Sbjct 514 TGGAGGTCTCTAGC-G----GT-----AACTTA-----GGAGAAAGTAGC-GATATCGGA 557
Query 1027 ATGTTTTTGGGTTGGGCAATGGCAGCCATATACATGGGTGGAAGGCTTCCCCAAATATGT 1086
|||| ||||||||||||||||| || || |||||||||||||||||||| |||||||||
Sbjct 558 ATGTGGTTGGGTTGGGCAATGGCGGCGATTTACATGGGTGGAAGGCTTCCTCAAATATGT 617
Query 1087 CTCAATATGAGGAGAGGGCATGTTGAGGGATTGAATCCATTGATGTTCTTCTTTGCATTA 1146
| ||||| || ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 618 ATGAATATAAGAAGAGGACATGTTGAGGGATTGAATCCATTGATGTTCTTCTTTGCATTC 677
Query 1147 GTTGGCAATATGACTTATGTTGCAAGCATACTCGTGAACAGTGTCGAATGGTT-AAAACT 1205
||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||| |
Sbjct 678 GTTGGCAATGTGACTTATGTTGCAAGCATACTTGTGAACAGTGTCGAATGGTCGAAAA-T 736
Query 1206 TGCACCGAATCTACCATGGCTTGTTGATGCAGGAGGATGTGTTGTGCTTGATTTTCTTAT 1265
| ||| ||||||||||||||||||||| | |||||||||| ||||||||||||||||||
Sbjct 737 CGAACCAAATCTACCATGGCTTGTTGATTCTGGAGGATGTGCTGTGCTTGATTTTCTTAT 796
Query 1266 TCTGCTTCAGTTTTTCCACTTCCGCTGTCGCAAAGAC-A-AA-GATACTGACAAGAAGAA 1322
||||||||||||||| |||| |||||||||||| | | || ||| | |||||||||||
Sbjct 797 TCTGCTTCAGTTTTTTTACTTTGGCTGTCGCAAAGTCGAGAAAGATTCCGACAAGAAGAA 856
Query 1323 GCATGAA 1329
|||||||
Sbjct 857 GCATGAA 863
Score = 335 bits (181), Expect = 6e-91
Identities = 251/285 (88%), Gaps = 4/285 (1%)
Strand=Plus/Plus
Query 235 TTTAGAGATGGATTGTCATTGTCTCTTGGTATCATCAGTGTTATCAGTTGGGGTGTTGCT 294
||| |||||| ||||||||| ||||||||||||||||||||||| |||||| |||||||
Sbjct 24 TTTCGAGATGAATTGTCATTATCTCTTGGTATCATCAGTGTTATTAGTTGGAGTGTTGCC 83
Query 295 GAGATACCTCAGATTATGACTAATTACAGTGAGAAATCCACTGAAGGTCTCTCTATTA-C 353
|||||||| |||||||||||||| |||||| | ||||||| ||||||| |||||| || |
Sbjct 84 GAGATACCGCAGATTATGACTAACTACAGTAACAAATCCATTGAAGGTGTCTCTA-TAGC 142
Query 354 CTTCTTAACAACGTGGATGATTGGGGATATCTTCAATCTTCTTGGCTGCTTGATGGAACC 413
||||||||| || |||||| |||| |||||||| ||| || |||| ||||||||||||||
Sbjct 143 CTTCTTAACGACATGGATGCTTGGAGATATCTTTAATGTTGTTGGTTGCTTGATGGAACC 202
Query 414 AGCTACTCTTCCAACACAATTCTACATGGCACTGTTGTATACAGTGACTACATC-AGTTC 472
||||| ||||||| ||||||||||| |||| ||||||||||| || ||||| | ||||
Sbjct 203 AGCTAGTCTTCCAGTACAATTCTACACGGCAGTGTTGTATACACTGGCTACA-CTTGTTC 261
Query 473 TCTATGTTCAATCTATATATTACGGCCATATCTACCCGCGGTTGA 517
||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 262 TCTATGTTCAATCTATATATTACGGGCATATTTACCCGCGGTTGA 306
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57859082155
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5