BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41060.1
Length=1787
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934926 jgi|Araly1|934926|scaffold_402914.1 2087 0.0
Ahg486125 jgi|Araly1|486125|fgenesh2_kg.5__2117__AT3G56860.3 702 0.0
> Ahg934926 jgi|Araly1|934926|scaffold_402914.1
Length=1384
Score = 2087 bits (1130), Expect = 0.0
Identities = 1309/1392 (94%), Gaps = 26/1392 (2%)
Strand=Plus/Plus
Query 132 AAAA-CCGCCAATTCCGTTATGACAAAGAAGAGAAAGCTCGAATCTGAATCCAACGAAAC 190
|||| || |||||||| | ||| |||||||||||||||||||||||||||||||||||||
Sbjct 2 AAAACCCACCAATTCCATCATGGCAAAGAAGAGAAAGCTCGAATCTGAATCCAACGAAAC 61
Query 191 GTCAGAGCCGACGGAGAAGCAGCAGCAGCAATGTGAAAAAGAGGATCCGGAAATCAGAAA 250
|||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||
Sbjct 62 GTCAGAGCCGACGGAG-A--AGCAGCTGCAATGTGAAAAAGAGGATCCGGAAATCAGAAA 118
Query 251 TGTTGATAATCAAAGAGACGACGACGAACAAGTAGTA-GAGCAAGACACACTAAAGGAGA 309
|| |||||| || ||||||||||||||| |||||||| || |||||| |||| | |
Sbjct 119 TGATGATAAACAGAGAGACGACGACGAAGAAGTAGTAGGA-CAAGACGCACT-----A-A 171
Query 310 TGCACGAAGAGGAAGCTAAAGGTGAAGATAACATAGAAGCGGAGACGTCGTCCGGATCTG 369
| | ||||||||||||||||||||||| | ||| ||||||||||||||||||||||
Sbjct 172 ---A-G--GAGGAAGCTAAAGGTGAAGATAATACAGAGGCGGAGACGTCGTCCGGATCTG 225
Query 370 GGAATCAAGGAAATGAGGATGATGACGAAGAAGAACCTATTGAGGATCTATTGGAACCGT 429
|||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 226 GGAATCGGGGAAATGAGGATGATGACGAAGAAGAACCCATCGAGGATCTATTGGAACCGT 285
Query 430 TTTCAAAGGATCAACTTTTGATTCTTCTCAAGGAAGCTGCAGAGAGACATCGCGATGTAG 489
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 286 TTTCAAAAGATCAACTTTTGATTCTTCTCAAGGAAGCTGCAGAGAGACATCGCGATGTTG 345
Query 490 CTAATCGAATCCGGATTGTGGCGGATGAAGA-TCTTGTTCATCGTAAGATCTTCGTTCAC 548
|| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 346 CTGATCGAATCCGGATTGTGGCGGATGAAGATTC-TGTTCATCGTAAGATCTTCGTTCAC 404
Query 549 GGGCTTGGATGGGATACTAAAGCTGATTCACTTATCGACGCTTTTAAACAGTACGGAGAG 608
||||||||||||||||||||||| || |||||||||| |||||||| || |||||||||
Sbjct 405 GGGCTTGGATGGGATACTAAAGCCGAAACACTTATCGAAGCTTTTAAGCAATACGGAGAG 464
Query 609 ATTGAAGATTGCAAATGTGTGGTTGATAAGGTATCTGGGCAATCTAAAGGTTATGGCTTT 668
|| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 465 ATCGAAGATTGCAAATGTGTGGTTGATAAGATTTCTGGGCAATCTAAAGGTTATGGCTTT 524
Query 669 ATCCTCTTTAAGTCAAGGTCTGGTGCTCGTAACGCTCTTAAGCAGCCTCAGAAGAAGATT 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 ATCCTCTTTAAGTCAAGGTCTGGTGCTCGTAACGCTCTTAAGCAGCCTCAGAAGAAGATT 584
Query 729 GGAACTCGTATGACTGCGTGCCAGCTGGCGTCTATAGGACCTGTTCAGGGGAACCCTGTT 788
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 585 GGAACTCGTATGACTGCTTGCCAGCTGGCGTCTATAGGACCTGTTCAGGGAAACCCTGTC 644
Query 789 GTGGCTCCTGCTCAGCATTTCAATCCTGAGAATGTTCAGAGGAAGATTTATGTCAGTAAC 848
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 645 GTGGCTCCTGCTCAGCATTTCAATCCTGAGAATGTTCAGAGGAAGATCTATGTTAGTAAC 704
Query 849 GTTAGTGCAGA-CATTGATCCGCAGAAGTTGCTGGAGTTTTTCTCAAGGTTTGGGGAGAT 907
||||||||||| | |||||||||||||| ||||||||||||| ||||| |||||||||||
Sbjct 705 GTTAGTGCAGATC-TTGATCCGCAGAAGCTGCTGGAGTTTTTTTCAAGATTTGGGGAGAT 763
Query 908 AGAAGAAGGTCCTTTGGGGCTTGATAAAGCTACTGGGAGACCTAAAGGTTTCGCTTTGTT 967
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 764 TGAAGAAGGTCCTTTGGGGCTTGATAAAGTTACTGGGAGACCTAAAGGTTTCGCTTTGTT 823
Query 968 TGTCTATAGATCCCTAGAAAGTGCCAAGAAGGCATTGGAGGAGCCACACAAGACTTTTGA 1027
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 824 TGTCTATAGATCCCTAGAAAGTGCCAAGAAGGCATTGGAGGAGCCACACAAGACTTTTGA 883
Query 1028 AGGCCATGTCTTGCATTGCCACAAAGCAAATGATGGGCCAAAACAGGTTAAGCAACATCA 1087
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 884 AGGCCATGTCTTGCATTGCCACAAAGCAAATGATGGGCCTAAACAGGTTAAGCAACATCA 943
Query 1088 ACATAACCATAACTCTCACAATCAAAATTCCCGTTACCAAAGGAACGACAACAATGGTTA 1147
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 944 ACATAACCATAACTCTCACAATCAAAATTCCCGCTACCAAAGGAACGACAGCAATGGTTA 1003
Query 1148 TGGTGCCCCTGGAGGCCATGGACATTTCATAGCTGGTAATAACCAAGCTGTGCAGGCGTT 1207
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1004 TGGTGCACCTGGAGGCCATGGACATTTCATAGCTGGTAATAACCAAGCTGCGCAGGCGTT 1063
Query 1208 TAATCCGGCCATTGGCCAGGCCCTCACAGCTTTGCTGGCATCTCAGGGTGCTGGGTTGGG 1267
||| ||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1064 TAACCCGGCTATTGGCCAAGCCCTTACAGCTTTGCTGGCATCTCAGGGTGCTGGGTTGGG 1123
Query 1268 TTTAAACCAAGCATTTGGGCAGGCTTTGTTGGGGACATTAGGGACAGCTAGCCCAGGAGC 1327
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1124 TTTGAACCAAGCATTTGGGCAGGCTTTGTTGGGGACATTAGGGACAGCTAGCCCAGGAGC 1183
Query 1328 TGTAGGTGGAATGCCAAGTGGCTATGGTACTCAAGCAAATATCTCACCTGGGGTCTATCC 1387
|||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 1184 TGTAGGAGGAATGCCAAGTGGCTATGGTACTCAAGCAAATATCACGCCTGGGGTCTATCC 1243
Query 1388 TGGGTACGGTGCTCAAGCCGGGTACCAGGGCGGTTATCAGACTCAGCAACCTGGTCAGGG 1447
|||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1244 TGGGTACGGTGCCCAAGCCGGGTTTCAGGGCGGTTATCAGACTCAGCAACCTGGTCAGGG 1303
Query 1448 CGGTGCGGGAAGAGGGCAGCATGGTGCTGGGTATGGTGGTCCTTACATGGGTCGTTAGAT 1507
|||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1304 CGGTGCTGGAAGAGGGCAGCATGGTGTTGGGTATGGTGGTCCTTACATGGGTC---AGAT 1360
Query 1508 -TAGCCACTCAG 1518
|||||||||||
Sbjct 1361 GTAGCCACTCAG 1372
> Ahg486125 jgi|Araly1|486125|fgenesh2_kg.5__2117__AT3G56860.3
Length=2242
Score = 702 bits (380), Expect = 0.0
Identities = 959/1223 (78%), Gaps = 102/1223 (8%)
Strand=Plus/Plus
Query 348 GCGGAGACGTCGTCCGGATCTGGGAATCAAGGAAATG---AGGATGATGACGAAGAAGAA 404
|||| | || |||| ||||||||||||||||| ||| | |||||||| || || ||
Sbjct 312 GCGGCGGCGACGTCTGGATCTGGGAATCAAGGGGATGTAAATGATGATGATGACGATGAG 371
Query 405 CCTATTGAGGATCTATTGGAACCGTTTTCAAAGGATCAACTTTTGATTCTTCTCAAGGAA 464
|| ||| ||||||| |||||||||||||||||||| |||||||||| |||||| || |||
Sbjct 372 CCAATTCAGGATCTGTTGGAACCGTTTTCAAAGGAACAACTTTTGAGTCTTCTTAAAGAA 431
Query 465 GCTGCAGAG-AGACATCGCGATGTAGCTAATCGAATCC-GGATTGTGGCGGATGAAGATC 522
|| || ||| || |||| |||||||| |||||||||| ||| || || ||||| || |
Sbjct 432 GCAGCGGAGAAG-CATCTTGATGTAGCCAATCGAATCCGGGA-AGTAGCTGATGAGGACC 489
Query 523 TTGTTCATCGTAAGATCTTCGTTCACGGGCTTGGATGGGATACTAAAGCTGATTCACTTA 582
|||||| || ||||||||||| ||||| ||||| |||||||| ||| | || | ||||
Sbjct 490 CTGTTCACCGGAAGATCTTCGTGCACGGTCTTGGTTGGGATACCAAAACAGAGACGCTTA 549
Query 583 TCGACGCTTTTAAACAGTACGGAGAGATTGAAGATTGCAAATG-TGTGGTTGATAAGGTA 641
|||| |||||||| |||||||||||||| ||||||||| || | |||| |||||||| |
Sbjct 550 TCGAAGCTTTTAAGCAGTACGGAGAGATCGAAGATTGC-AAGGCTGTGTTTGATAAGATC 608
Query 642 TCTGGGCAATCTAAAGGTTATGGCTTTATCCTCTTTAAGTCAAGGTCTGGTGCTCGTAAC 701
|| ||| |||||||||||||||||||||| | || ||||| |||| |||||||| ||
Sbjct 609 TCAGGGAAATCTAAAGGTTATGGCTTTATTTTGTTCAAGTCTCGGTCAGGTGCTCGCAAT 668
Query 702 GCTCTTAAGCAGCCTCAGAAGAAGATTGGAACTCGTATGACTGCGTGCCAGCTGGCGTCT 761
|| |||||||||||||||||||||||||| | ||||||||| || || || |||| |||
Sbjct 669 GCACTTAAGCAGCCTCAGAAGAAGATTGGTAGTCGTATGACGGCATGTCAATTGGCTTCT 728
Query 762 ATAGGACCTGT-TCAGG-GGAAC-CC--T-G-T--T---G-TG-----GCTCCTGCTCAG 803
| ||||||||| | || ||| | || | | | | | || || |||||||||
Sbjct 729 AAAGGACCTGTCTTTGGTGGAGCTCCTATCGCTGCTGCAGCTGTCTCAGCGCCTGCTCAG 788
Query 804 CATTTC-AATC-CTGAG-A-ATGTTCAGAGGAAGATTTATGTCAGTAACGTTAGTGCAGA 859
|| ||| || | ||||| | | | |||| ||||||||||| ||||| ||| | |||||
Sbjct 789 CA-TTCGAA-CTCTGAGCACACG--CAGAAAAAGATTTATGTTAGTAATGTTGGAGCAGA 844
Query 860 -CATTGATCCGCAGAAGTTGC-TGGAGTTTTTCTCAAGGTTTGGGGAGATAGAAGAAGGT 917
| ||||||| |||||||| | ||| ||| ||||||| |||||| ||||| |||||||||
Sbjct 845 GC-TTGATCCACAGAAGTTACTTGG-GTTCTTCTCAAAGTTTGGAGAGATTGAAGAAGGT 902
Query 918 CCTTTGGGGCTTGATAAAG-CTACTGGGAGACCTAAAGGTTTC-GCTTTGTTTGTCTAT- 974
|||||||| |||||| ||| |||||||||||||||||||||| | | | ||||| |||
Sbjct 903 CCTTTGGGTCTTGAT-AAGTTTACTGGGAGACCTAAAGGTTTCTG-TCTCTTTGTTTATA 960
Query 975 AGATC-CCTAGAAAGTGCCAAGAAGGCATTGGAGGAGCCACACAAGACTTTTGAAGGCCA 1033
|| || || ||||| ||||||| ||| ||||||||||||||||||||||||||||| ||
Sbjct 961 AG-TCGGCT-GAAAGCGCCAAGAGGGCTTTGGAGGAGCCACACAAGACTTTTGAAGGTCA 1018
Query 1034 TGTCTTGCATTGCCACAAAGCAAAT-GATGGGCCAAAACAGGTTAAGCA--A-CATCAAC 1089
| ||||||||||||| ||||| | | ||||| || |||| || ||||| | ||||| |
Sbjct 1019 TATCTTGCATTGCCAGAAAGCTA-TCGATGGTCCCAAACCGGGCAAGCAGCAGCATCACC 1077
Query 1090 ATAACC-ATAACTCTCACAATCAAAATTCC-CGTTACCAAAGGAACGACAACAATGGTTA 1147
|||||| | | | | ||||| ||| | || |||||||||||||| || |||||||||||
Sbjct 1078 ATAACCCACA-CGCCCACAA-CAA--T-CCTCGTTACCAAAGGAATGATAACAATGGTTA 1132
Query 1148 TGGTGCC-CCTGGAGGCCATGGACATTTCATAGCTGGTAATA-ACC---AA-GC-TG-T- 1198
|||| || |||||||| ||||||||| |||| |||||||| | | || | || |
Sbjct 1133 TGGT-CCGCCTGGAGGTCATGGACATCTCATGGCTGGTAACCCAGCTGGAATGGGTGGTC 1191
Query 1199 --GC-A----GGCGTTTAATCCGGCCATTGGCCAGGCCCTCACAGCTTTGCTGGCATCTC 1251
|| | |||| | || ||||||||||| |||||| | |||||| | ||||||||||
Sbjct 1192 CAGCGACACAGGCGATAAACCCGGCCATTGGACAGGCCTTGACAGCTATACTGGCATCTC 1251
Query 1252 AGGGTGCTGGGTTGGGTTTAAA-CCAAGC-ATTTGGGCAGGCTTTGTTGGGGACATTAGG 1309
|||| ||||| |||| ||| || || || ||| || |||||||||||||| | || ||
Sbjct 1252 AGGGAGCTGGTTTGGCTTTTAATCCG-GCGATT-GGACAGGCTTTGTTGGGTTCCTTGGG 1309
Query 1310 GACAGCTA--GCCC-AGGAGCTGTA-GG--T-GGAATGCCAAGTGGCTATGGTACTCAAG 1362
|||||||| | | | | | | | || | |||||||||| ||| |||||||||||||
Sbjct 1310 GACAGCTACAGGCGTAA-ACCCGAATGGAGTTGGAATGCCAACTGGTTATGGTACTCAAG 1368
Query 1363 CAAATATCTCACCTGGGGTCTAT-CCTGGGTACGGTGCTCAAGCCGG-GTACCAGGGCGG 1420
| ||| |||| |||| | || |||||||||||| | ||| || | || || || ||
Sbjct 1369 C---TATGGCACC-GGGGACAATGCCTGGGTACGGTACACAA-CCTGCGTTGCAAGGTGG 1423
Query 1421 TTATCAGACTC-AGCAACCTGGTCAGGGCGGTGCGGGAAGAGGGCAGCATGGTG-CTGGG 1478
||||||||||| | ||||||||||| |||||| | | |||||||| ||||||| | |||
Sbjct 1424 TTATCAGACTCCA-CAACCTGGTCAAGGCGGTACAAGCAGAGGGCAACATGGTGTC-GGG 1481
Query 1479 T-AT--GGTGGTCCTTACATGGG 1498
|| |||| ||| ||||||||
Sbjct 1482 CCATACGGTGCTCCCTACATGGG 1504
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67076921445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5