BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41070.1
Length=1269
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483175 jgi|Araly1|483175|fgenesh2_kg.4__2235__AT2G41070.2 1522 0.0
> Ahg483175 jgi|Araly1|483175|fgenesh2_kg.4__2235__AT2G41070.2
Length=1341
Score = 1522 bits (824), Expect = 0.0
Identities = 919/965 (95%), Gaps = 6/965 (1%)
Strand=Plus/Plus
Query 310 GCTACATATATGGGTTCTATTAGAGGAAACATTGAAGAGCCTATATCTCAGTCATTAACG 369
|||| || |||||||||||||||||||||| ||||||| |||||||||||||| |||||
Sbjct 370 GCTATATCTATGGGTTCTATTAGAGGAAACGTTGAAGAACCTATATCTCAGTCGTTAACT 429
Query 370 AGGCAGAACTCTCTCTATAGCTTAAAGCTCCATGAGGTTCAAACCCACTTAGGAAGTTCT 429
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 430 AGGCAAAACTCTCTCTATAGCTTAAAGCTCCATGAGGTTCAAACCCACTTAGGCAGTTCT 489
Query 430 GGAAAACCACTAGGAAGCATGAACCTTGATGAGCTTCTCAAGACTGTCTTGCCACCAGCT 489
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 490 GGAAAACCACTAGGAAGCATGAACCTTGATGAGCTTCTCAAGACTGTCTTGTCTCCAGCT 549
Query 490 GAGGAAGGGCTTGTTCGTCAGGGAAGCTTGACGTTACCTCGAGATCTCAGTAAAAAGACA 549
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 550 GAGGAAGGTCTTGTTCGTCAGGGAAGCTTGACGTTACCTCGAGATCTTAGTAAAAAGACA 609
Query 550 GTTGATGAGGTCTGGAGAGATATCCAACAGGACAAGAATGGAAACGGTACTAGTACTACT 609
|||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||
Sbjct 610 GTTGATGAGGTCTGGAGAGATATCCAACAGGACAAGGATGGAAACAGTACCAGTACTACT 669
Query 610 ACTACTCATAAGCAGCCTACACTCGGTGAAATAACACTTGAGGATTTGTTGTTGAGAGCT 669
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 670 ACTACTCATAAGCAGCCTACACTCGGTGAAATCACTCTTGAGGATTTGTTGTTGAGAGCT 729
Query 670 GGTGTAGTGACTGAGACAGTAGTCCCTCAAGAAAATGTTGTTAACATAGCTTCAAATGGG 729
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 730 GGTGTAGTGACTGAGACAATAGTCCCTCAAGAAAATGTTGTTAACATAGCTTCAAATGGG 789
Query 730 CAATGGGTTGAGTATCATCATCAGCCTCAACAACAACAAGGGTTTATGACATATCCGGTT 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 790 CAATGGGTTGAGTATCATCATCAGCCTCAACAACAACAAGGGTTTATGACATATCCGGTT 849
Query 790 TGCGAGATGCAAGATATGGTGATGATGGGTGGATTATCGGATACACCACAAGCGCCTGGG 849
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 850 TGTGAGATGCAAGATATGGTGATGATGGGTGGATTATCGGATACACCACAAGCGCCTGGA 909
Query 850 AGGAAAAGAGTAGCTGGAGAGATTGTGGAGAAGACTGTTGAGAGGAGACAGAAGAGGATG 909
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 910 AGGAAAAGAGTAGCTGGAGAGATTGTGGAGAAGACTGTTGAGAGGAGACAGAAGAGAATG 969
Query 910 ATCAAGAACAGAGAATCTGCAGCACGTTCACGAGCTAGGAAACAGGCTTATACACATGAA 969
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 970 ATCAAGAACAGAGAATCTGCAGCACGTTCACGAGCTAGGAAACAGGCTTATACTCATGAA 1029
Query 970 TTAGAGATCAAGGTTTCAAGGTTAGAAGAAGAAAACGAAAAACTTCGGAGGCTAAAGGAG 1029
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1030 TTAGAGATCAAGGTTTCAAGATTAGAAGAAGAAAACGAAAAACTTCGGAGGCTTAAGGAG 1089
Query 1030 GTGGAGAAGATCCTACCAAGTGAACCACCACCAGATCCTAAGTGGAAGCTCCGGCGAACA 1089
|||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1090 GTGGAGAAGATCCTGCCAAGTGAACCACCACCGGATCCTAAGTGGAAACTCCGGCGAACA 1149
Query 1090 AACTCTGCTTCTCTCTGATCCTAAAGACtc-t-t--ctttcttt-c-ttcttcttTGTGT 1143
|||||||||||||| ||||| ||||||||| | | ||||||| | |||||||||||||
Sbjct 1150 AACTCTGCTTCTCTTTGATCTTAAAGACTCATATTTCTTTCTTCACCTTCTTCTTTGTGT 1209
Query 1144 TGGTTTATATCAGACCGCTTTGTTCTTTGTATATTGTGTAGACTTTATTGACTTTGAACA 1203
||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 1210 TGGTTTATATCAGACAGCTTTGTTCTTTGTATATTCTGTAGACTTTATTGACATTGAACA 1269
Query 1204 GCATGTCTTTATAAACATTTCTTGAGTGTATTCCTCTTTTGCAGCTAGTTCAAACTTTTT 1263
| ||||||||||| |||||||||||||||||| |||| |||||||||||||| ||||||
Sbjct 1270 GTATGTCTTTATAGACATTTCTTGAGTGTATTTCTCTACTGCAGCTAGTTCAAGCTTTTT 1329
Query 1264 GAGTA 1268
||||
Sbjct 1330 AAGTA 1334
Score = 335 bits (181), Expect = 5e-91
Identities = 259/293 (88%), Gaps = 20/293 (7%)
Strand=Plus/Plus
Query 23 tttctctttctctttctactatttctctcCTGTGGAGAAACTCAGGAGATagagagagag 82
||||||||||||||||||||| ||||||||||||||||| | || |||| ||||
Sbjct 29 TTTCTCTTTCTCTTTCTACTA----TCTCCTGTGGAGAAACT-A--AG---GAGATAGAG 78
Query 83 agagagaagagaagagagCATGTATGTTTGGTTTTATAATCTCTCTACTCATAC---CAA 139
||||| |||||||||| |||| |||||||||||||||||||||| ||||||| ||
Sbjct 79 AGAGA-CAGAGAAGAGA--ATGTGTGTTTGGTTTTATAATCTCTCTGCTCATACAAAAAA 135
Query 140 AGATTTGTCTCAGACCCACCACTTGGACAGAGAGAA-CCCAAGCTCCTTTC-TCTCTTTT 197
| ||||||||||||||||||||||||||||| |||| |||||||||||||| || |||||
Sbjct 136 ATATTTGTCTCAGACCCACCACTTGGACAGACAGAACCCCAAGCTCCTTTCTTC-CTTTT 194
Query 198 TCTCGATCTACTCCTTCTTAATCTCCTTTTTTGAAACTTGAAGCCACTTTCAACATCATC 257
||||||||| ||| |||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 195 TCTCGATCTGCTCTTTCTTAATCTCCTTTTTTGAAACTTGAAGCCAGTT-CAACATCATC 253
Query 258 CTTAAACTTTTGTTCCCTTATTCACAATCTCCTGCCACCTCTCATTTCTCTAG 310
||||||||||||||||||| ||| ||||||||| |||| ||||||||||||||
Sbjct 254 CTTAAACTTTTGTTCCCTTCTTCGCAATCTCCTACCACTTCTCATTTCTCTAG 306
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47424908748
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5