BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41100.1
Length=1237
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934929 jgi|Araly1|934929|scaffold_402917.1 872 0.0
> Ahg934929 jgi|Araly1|934929|scaffold_402917.1
Length=736
Score = 872 bits (472), Expect = 0.0
Identities = 631/706 (89%), Gaps = 18/706 (3%)
Strand=Plus/Plus
Query 317 aaaaa-aaCAATGGCGGATAAGCTCACTGACGATCAGAT-TACAGAGTACAGGGAATCTT 374
||||| |||||||| |||| ||||||||||||| ||||| | | || | || |||| | |
Sbjct 12 AAAAAGAACAATGGTGGATCAGCTCACTGACGAACAGATCT-CGGAATTCAAGGAAGCCT 70
Query 375 TCAGGTTATTCGACAAGAATGGTGATGGT-TCCATTACGAAAAAGGAGCTCCGTACCGTG 433
||||| ||||||||||||||||||||||| | |||||| | |||||||||| ||||||||
Sbjct 71 TCAGGGTATTCGACAAGAATGGTGATGGTGT-CATTACCAGAAAGGAGCTCGGTACCGTG 129
Query 434 ATGTTTTCCCTCGGTAAAAACCGGACAAAAGCTGATCTTCAGGACATGATGAACGAAGTG 493
||| ||| |||||| |||||| ||| ||||||| ||||||||| |||||||||||||
Sbjct 130 ATGCGTTCTCTCGGTCAAAACCTGACCCAAGCTGAGCTTCAGGACGCGATGAACGAAGTG 189
Query 494 GATTTAGATGGTGATGGAACCATCGATTTCCCTGAGTTCT-TGTACCTAATGGCTAAGAA 552
|||||||||||| ||||||||||||||||||||||||| | ||| |||||||||||||
Sbjct 190 GATTTAGATGGTAATGGAACCATCGATTTCCCTGAGTT-TGTGTGTGTAATGGCTAAGAA 248
Query 553 TC-AAGGTCATGATCAA--G-CGCCGCGTCACACTaaaaaaaCAATGGTGGATTATCAGC 608
|| || ||||||||||| | |||||||||| ||||||||||||||||||||||||||||
Sbjct 249 TCTAA-GTCATGATCAAGTGCCGCCGCGTCAAACTAAAAAAACAATGGTGGATTATCAGC 307
Query 609 TCACTGACGATCAGATCTTAGAATTCAGGGAAGCCTTCCGCGTATTCGACAAGAATGGTG 668
|||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||
Sbjct 308 TCACTGACGATCAGATCTCAGAATTCAAGGAAGCCTTCCGCTTATTCGACAAGAATGGTG 367
Query 669 ATGGTTACATTACCGTGAATGAGCTCCGTACTACTATGCGCTCCCTTGGTGAAACCCAAA 728
|||||||||||||||| ||||||||||||| ||||||| ||||||| ||||||| |||||
Sbjct 368 ATGGTTACATTACCGTAAATGAGCTCCGTATTACTATGAGCTCCCTCGGTGAAAACCAAA 427
Query 729 CAAAAGCTGAGCTCCAGGACATGATCAACGAAGCGGATGCAGATGGTGACGGAACCATCA 788
||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 428 CAAAAGCTGAGCTTCAGGACATGATCAACGAAGCAGATGCAGATGGTGATGGAACCATCA 487
Query 789 GTTTCTCTGAGTTTGTGTGTGTAATGACTGGTAAAATGATTGACACTCAGTCTAAGAAAG 848
||||| |||||||||||||||||||| |||| ||||||| |||| || || ||||| |
Sbjct 488 GTTTCCCTGAGTTTGTGTGTGTAATGGCTGGGAAAATGACTGACTCTGAGG--AAGAA-G 544
Query 849 AAACGTACAGAGTTGTGAATCAAGGTCAGGGTCAAGTGCAGCGTCACACTAGAAATGACA 908
|||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 545 ---CGTACAGAGTTGCGAATCAAGGTCAGGGTCAAGTGCCGCGTCACACTAAAAATGACA 601
Query 909 GAGCTGGTGGCACCAATTGGGAGAGGGACATAGCGGTCGGGGTTGCCAGCAATATCATCG 968
|| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 602 GAACTGGTGGCACTAATTGGGAGAGGGACATTGCGGTCGGGGTTGCCAGCAATATCATCG 661
Query 969 CTTCGCCAATTTCCGACTTCATGAAAGATAGGTTTAAAGATTTGTT 1014
||||||||||| |||||||||| |||||| ||||||||| |||||
Sbjct 662 CTTCGCCAATTACCGACTTCATTAAAGATTTGTTTAAAGAGTTGTT 707
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46204975404
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5