BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41110.2
Length=837
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934930 jgi|Araly1|934930|scaffold_402918.1 656 0.0
Ahg938640 jgi|Araly1|938640|scaffold_502831.1 477 5e-134
Ahg947442 jgi|Araly1|947442|scaffold_703671.1 388 3e-107
Ahg484819 jgi|Araly1|484819|fgenesh2_kg.5__811__AT3G43810.1 368 3e-101
Ahg483180 jgi|Araly1|483180|fgenesh2_kg.4__2240__AT2G41120.1 176 2e-43
Ahg934929 jgi|Araly1|934929|scaffold_402917.1 122 3e-27
> Ahg934930 jgi|Araly1|934930|scaffold_402918.1
Length=490
Score = 656 bits (355), Expect = 0.0
Identities = 381/393 (97%), Gaps = 3/393 (1%)
Strand=Plus/Plus
Query 262 GGTTGCATTACCACAAAGGAGCTTGGTACCGTGATGCGTTCCCTCGGTCAAAACCCAACC 321
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 96 GGTTGCATCACCACAAAGGAGCTCGGTACCGTGATGCGTTCCCTCGGTCAAAACCCGACC 155
Query 322 GAAGCTGAGCTTCAGGACATGATCAACGAAGTTGATGCGGATGGTAACGGAACCATTGAT 381
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 156 GAAGCTGAGCTTCAGGACATGATCAACGAAGTGGATGCGGATGGTAACGGAACCATTGAT 215
Query 382 TTCCCGGAGTTCTTGAACCTAATGGCTAGGAAAATGAAGGACACTGACTCTGAGGAAGAA 441
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 216 TTCCCTGAGTTCTTGAACCTAATGGCTAGGAAAATGAAGGACACTGACTCTGAGGAAGAA 275
Query 442 CTCAAGGAAGCTTTCAGAGT-TTTCGACAAAGACCAGAACGGTTTCATCTCAGCTGCTGA 500
|||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||
Sbjct 276 CTCAAGGAAGCTTTCAGAGTCTTT-GACAAAGATCAGAACGGTTTCATCTCAGCTGCTGA 334
Query 501 ATTGAGACATGTGATGACTAACCTCGGCGAGAAGCTTACTGATGAAGAAGTTGATGAGAT 560
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 335 ATTGAGACATGTGATGACTAACCTCGGCGAGAAGCTAACTGATGAAGAAGTTGATGAGAT 394
Query 561 GATTAAGGAAGCTGATGTTGATGGTGATGGTCAGATCAACTACGAAGAGTTTGTGAAGGT 620
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 395 GATTAAGGAAGCTGATGTTGATGGTGATGGTCAGATCAACTACGAAGAGTTTGTCAAGGT 454
Query 621 TATGATGGCTAAGTGAGGATTG-AAACAACTTC 652
||||||||| |||||||||||| ||||||||||
Sbjct 455 TATGATGGCCAAGTGAGGATTGGAAACAACTTC 487
Score = 152 bits (82), Expect = 4e-36
Identities = 97/104 (93%), Gaps = 1/104 (1%)
Strand=Plus/Plus
Query 133 aaaagaaaagaaaaaaCAATGGCGGATCAGCTCACAGACGATCAGATCTCAGAATTCAAG 192
|||| |||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 3 AAAAAAAAACAAAAAGCAATGGCGGATCAGCTCACTGACGATCAGATCTCAGAATTCAAG 62
Query 193 GAAGCCTTCAGCTTATTCGACAAGGATGGTGATGGTATGCTTCA 236
||||| |||||||||||||||||||||||||||||| ||| |||
Sbjct 63 GAAGCTTTCAGCTTATTCGACAAGGATGGTGATGGT-TGCATCA 105
> Ahg938640 jgi|Araly1|938640|scaffold_502831.1
Length=575
Score = 477 bits (258), Expect = 5e-134
Identities = 337/376 (90%), Gaps = 2/376 (1%)
Strand=Plus/Plus
Query 262 GGTTGCATTACCACAAAGGAGCTTGGTACCGTGATGCGTTCCCTCGGTCAAAACCCAACC 321
|||||||||||||| ||||||||||| || |||||||||||||| || ||||||||||||
Sbjct 97 GGTTGCATTACCACCAAGGAGCTTGGGACTGTGATGCGTTCCCTTGGACAAAACCCAACC 156
Query 322 GAAGCTGAGCTTCAGGACATGATCAACGAAGTTGATGCGGATGGTAACGGAACCATTGAT 381
||||| |||||||| ||||||||||| ||||| || || ||||||||||| |||||||||
Sbjct 157 GAAGCAGAGCTTCAAGACATGATCAATGAAGTGGACGCTGATGGTAACGGTACCATTGAT 216
Query 382 TTCCCGGAGTTCTTGAACCTAATGGCTAGGAAAATGAAGGACACTGACTCTGAGGAAGAA 441
||||| |||||||||||||| |||||| | || ||||||||||| ||||||||||||||
Sbjct 217 TTCCCAGAGTTCTTGAACCTCATGGCTCGTAAGATGAAGGACACCGACTCTGAGGAAGAG 276
Query 442 CTCAAGGAAGCTTTCAGAGTTTTCGACAAAGACCAGAACGGTTTCATCTCAGCTGCTGA- 500
||||||||||| ||| | ||||| ||||| ||||||||||||||||| ||||| |||||
Sbjct 277 CTCAAGGAAGCATTCCGGGTTTTTGACAAGGACCAGAACGGTTTCATTTCAGCCGCTGAG 336
Query 501 ATTGAGACATGTGATGACTAACCTCGGCGAGAAGCTTACTGATGAAGAAGTTGATGAGAT 560
|| | ||||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct 337 CTT-CGTCATGTGATGACAAACCTTGGTGAGAAGCTTACTGATGAAGAAGTTGATGAGAT 395
Query 561 GATTAAGGAAGCTGATGTTGATGGTGATGGTCAGATCAACTACGAAGAGTTTGTGAAGGT 620
||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 396 GATCAAGGAAGCTGATGTTGATGGTGATGGTCAGATTAACTATGAAGAGTTTGTTAAGGT 455
Query 621 TATGATGGCTAAGTGA 636
|||||||||||||||
Sbjct 456 CATGATGGCTAAGTGA 471
Score = 137 bits (74), Expect = 1e-31
Identities = 94/103 (91%), Gaps = 3/103 (3%)
Strand=Plus/Plus
Query 132 Gaaaa-gaaaag-aaaaaaCAATGGCGGATCAGCTCACAGACGATCAGATCTCAGAATTC 189
||||| || ||| ||||||||||||||||||||||||| |||||||||||||| || ||
Sbjct 1 GAAAAGGAGAAGAAAAAAACAATGGCGGATCAGCTCACCGACGATCAGATCTCTGAGTTT 60
Query 190 AAGGAAGCCTTCAGCTTATTCGACAAGGATGGTGATGGTATGC 232
|||||||| |||||||||||||||||||||||||||||| |||
Sbjct 61 AAGGAAGCTTTCAGCTTATTCGACAAGGATGGTGATGGT-TGC 102
> Ahg947442 jgi|Araly1|947442|scaffold_703671.1
Length=495
Score = 388 bits (210), Expect = 3e-107
Identities = 323/378 (85%), Gaps = 6/378 (2%)
Strand=Plus/Plus
Query 262 GGTTGCATTACCA-CAAAGGAGCTTGGTACCGTGATGCGTTCCCTCGGTCAAAACCCAAC 320
|||||||| || | |||| ||||| || || || |||||||| || || |||||||||||
Sbjct 101 GGTTGCATCACAACCAAA-GAGCTGGGAACAGTTATGCGTTCACTAGGACAAAACCCAAC 159
Query 321 CGAAGCTGAGCTTCAGGACATGATCAACGAAGTTGATGCGGATGGTAACGGAACCATTGA 380
|| ||||||||||| |||||||||||||| |||||||| ||||| ||||| || |||||
Sbjct 160 AGAGGCTGAGCTTCAAGACATGATCAACGAGGTTGATGCAGATGGAAACGGCACAATTGA 219
Query 381 TTTCCCGGAGTTCTTGAACCTAATGGCTAGGAAAATGAAGGACACTGACTCTGAGGAAGA 440
|||||| |||||| ||||||| ||||||| ||| ||||| ||||||||||| ||||||||
Sbjct 220 TTTCCCAGAGTTCCTGAACCTGATGGCTAAGAAGATGAAAGACACTGACTCAGAGGAAGA 279
Query 441 ACTCAAGGAAGCTTTCAGAGTTTTCGACAAAGACCAGAACGGTTTCATCTCAGCTGCTGA 500
|| || ||||| ||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 280 GCTAAAAGAAGCCTTCAGGGTTTTCGACAAAGACCAGAACGGTTTCATCTCCGCTGCTGA 339
Query 501 ATTGA-GACATGTGATGACTAACCTCGGCGAGAAGCTTACTGATGAAGAAGTTGATGAGA 559
| | | ||||||||||| || || || |||||||| |||||||| |||||||| ||||
Sbjct 340 GCT-ACGCCATGTGATGACCAATCTTGGTGAGAAGCTAACTGATGAGGAAGTTGAAGAGA 398
Query 560 TGATTAAG-GAAGCTGATGTTGATGGTGATGGTCAGATCAACTACGAAGAGTTTGTGAAG 618
|||| | || |||||||||||||| ||||||||||| ||||| || |||||||| |||
Sbjct 399 TGATCC-GTGAGGCTGATGTTGATGGAGATGGTCAGATTAACTATGAGGAGTTTGTCAAG 457
Query 619 GTTATGATGGCTAAGTGA 636
|||||||||||||||||
Sbjct 458 ATTATGATGGCTAAGTGA 475
> Ahg484819 jgi|Araly1|484819|fgenesh2_kg.5__811__AT3G43810.1
Length=750
Score = 368 bits (199), Expect = 3e-101
Identities = 320/379 (84%), Gaps = 6/379 (2%)
Strand=Plus/Plus
Query 262 GGTTGCATTACCACAAAGGAGCTTGGTACCGTGATGCGTTCCCTCGGTCAAAACCCAACC 321
|||||||| || |||||||||||||| || |||||| | || ||||| || ||||||||
Sbjct 164 GGTTGCATCACTACAAAGGAGCTTGGGACTGTGATGAGATCACTCGGGCAGAACCCAACA 223
Query 322 GAAGCTGAGCTTCAGGACATGATCAACGAAGTTGATGCGGATGGTAACGGAACCATTGAT 381
|||||||||||||||||||||||||||||||| ||||| ||||| ||||| || || |||
Sbjct 224 GAAGCTGAGCTTCAGGACATGATCAACGAAGTAGATGCAGATGGGAACGGGACAATAGAT 283
Query 382 TTCCCGGAGTTCTTGAACCTAATGGCTA-GGAAAATGAAGGACACTGACTCTGAGGAAGA 440
|||||||||||| ||||||| ||||| | |||| ||||| |||||||| || ||||| ||
Sbjct 284 TTCCCGGAGTTCCTGAACCTTATGGC-ACGGAAGATGAAAGACACTGATTCAGAGGAGGA 342
Query 441 ACTCAAGGAAGCTTTCAGAGTTTTCGACAAAGACCAGAACGGTTTCATCTCAGCTGCTGA 500
|| |||||||| ||||| ||||| ||||| |||||||||||||||||||| || |||||
Sbjct 343 GCTTAAGGAAGCCTTCAGGGTTTTTGACAAGGACCAGAACGGTTTCATCTCGGCAGCTGA 402
Query 501 A-TTGAGACATGTGATGACTAACCTCGGCGAGAAGCTTACTGATGAAGAAGTTGATGAGA 559
|| | || |||||||| || || || |||||||| || ||||| ||||| |||||||
Sbjct 403 GCTTC-GTCACGTGATGACAAATCTTGGGGAGAAGCTGACAGATGAGGAAGTCGATGAGA 461
Query 560 TGATTA-AGGAAGCTGATGTTGATGGTGATGGTCAGATCAACTACGAAGAGTTTGTGAAG 618
|||| || | |||||||| ||||||||||||||||||||||| |||||||| || ||
Sbjct 462 TGATCCGAG-AGGCTGATGTCGATGGTGATGGTCAGATCAACTATGAAGAGTTCGTCAAA 520
Query 619 GTTATGATGGCTAAGTGAG 637
|| |||||||| |||||||
Sbjct 521 GTCATGATGGCAAAGTGAG 539
> Ahg483180 jgi|Araly1|483180|fgenesh2_kg.4__2240__AT2G41120.1
Length=970
Score = 176 bits (95), Expect = 2e-43
Identities = 108/114 (95%), Gaps = 2/114 (2%)
Strand=Plus/Minus
Query 725 CTAAAATTTCATTCATGGCTGGTTTTTGCTGGTTAAAAAGACAGGAATGTTATGTGTTTT 784
|||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 970 CTAAAATTTCATTCATGGCTGGTTTTTGGTGGTTAAAAAGACAGGGGTGTTATGTGTTTT 911
Query 785 TACCTT-TTGTCTAAATGACTCATTGTTCATGTTATTGACAGGTTCAGAACCTG 837
|| ||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 910 TA-CTTCTTGTCTAAATGACTCATTGTTCATGTTATTGATAGGTTCAGAACCTG 858
> Ahg934929 jgi|Araly1|934929|scaffold_402917.1
Length=736
Score = 122 bits (66), Expect = 3e-27
Identities = 82/89 (92%), Gaps = 3/89 (3%)
Strand=Plus/Plus
Query 143 aaaaaaCAATGGCGG---ATCAGCTCACAGACGATCAGATCTCAGAATTCAAGGAAGCCT 199
|||||||||||| || |||||||||| |||||||||||||||||||||||||||||||
Sbjct 284 AAAAAACAATGGTGGATTATCAGCTCACTGACGATCAGATCTCAGAATTCAAGGAAGCCT 343
Query 200 TCAGCTTATTCGACAAGGATGGTGATGGT 228
|| |||||||||||||| |||||||||||
Sbjct 344 TCCGCTTATTCGACAAGAATGGTGATGGT 372
Score = 111 bits (60), Expect = 6e-24
Identities = 117/143 (82%), Gaps = 10/143 (7%)
Strand=Plus/Plus
Query 301 TCCCTCGGTCAAAACCCAACCGAAGCTGAGCTTCAGGACATGATCAACGAAGTTGATGCG 360
||||||||| |||||| ||| |||||||||||||||||||||||||||||| |||||
Sbjct 409 TCCCTCGGTGAAAACCAAACAAAAGCTGAGCTTCAGGACATGATCAACGAAGCAGATGCA 468
Query 361 GATGGTAACGGAACCATT-GATTTCCCGGAGTTCT-TGAACCTAATGGCTAGGAAAATGA 418
|||||| | |||||||| | |||||| ||||| | || |||||||| |||||||||
Sbjct 469 GATGGTGATGGAACCATCAG-TTTCCCTGAGTT-TGTGTGTGTAATGGCTGGGAAAATGA 526
Query 419 AGGACACTGACTCTGAGGAAGAA 441
| ||||||||||||||||
Sbjct 527 ----C--TGACTCTGAGGAAGAA 543
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30955808604
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5