BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41130.1
Length=1091
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934932 jgi|Araly1|934932|scaffold_402920.1 1338 0.0
> Ahg934932 jgi|Araly1|934932|scaffold_402920.1
Length=802
Score = 1338 bits (724), Expect = 0.0
Identities = 777/803 (97%), Gaps = 2/803 (0%)
Strand=Plus/Plus
Query 47 GGCGGCGCAAACAAAAGATAATGCAACCAGAGACCTCAGATCAGATGTTGTACTCGTTTC 106
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 GGCGGCGCAAACAAAAGATAATGCAACCAGAGACCTCAGATCAGATGTTGTATTCGTTTC 60
Query 107 TTGCCGGAAACGAAGTCGGCGGTGGAGGGTACTGCGTCTCCGGCGACTACATGACGACTA 166
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCGCCGGAAACGAAGTCGGCGGTGGAGGGTACTGCGTCTCCGGCGACTACATGACGACTA 120
Query 167 TGCAGAGCTTATGTGGGTCTTCGTCGTCGACGTCATCGTATTACCCACTGGCGATCTCCG 226
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 121 TGCAGAGCTTATGTGGGTCTTCTTCGTCGACTTCATCGTATTACCCACTGGCGATCTCCG 180
Query 227 GCATCGGAGAAACGATGGCTCAAGACAGAGCT-TTAGCTGCTTTGAGGAACCACAAAGAA 285
|||||||||||||||||||||||||||||||| || ||||||||||| || |||||||||
Sbjct 181 GCATCGGAGAAACGATGGCTCAAGACAGAGCTATT-GCTGCTTTGAGAAATCACAAAGAA 239
Query 286 GCTGAGAGAAGAAGGAGAGAGAGGATCAATTCTCATCTCAACAAGCTTCGTAACGTACTC 345
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GCTGAGAGAAGAAGAAGAGAGAGGATCAATTCTCATCTCAACAAGCTTCGTAACGTACTC 299
Query 346 TCTTGTAATTCTAAGACCGATAAAGCCACACTGCTCGCCAAAGTAGTTCAACGAGTCAGA 405
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 300 TCTTGTAATTCTAAGACCGATAAAGCCACACTGCTTGCCAAAGTAGTTCAACGAGTCAAA 359
Query 406 GAACTTAAACAGCAAACCCTAGAGACCTCCGACTCCGACCAAACATTATTACCATCAGAG 465
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 360 GAACTTAAACAGCAAACCCTAGAGATCTCCGACTCCGACCAAACACTATTACCATCAGAG 419
Query 466 ACCGACGAAATTAGTGTTCTACACTTTGGAGACTATTCAAACGACGGTCATATAATCTTC 525
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 420 ACCGACGAGATTAGCGTTCTACACTTTGGAGACTATTCAAACGACGGTCATATAATTTTC 479
Query 526 AAAGCCTCTCTATGTTGTGAAGATAGATCAGATCTCTTGCCGGACCTTATGGAGATTCTC 585
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 480 AAAGCCTCTCTATGTTGTGACGATAGATCAGATCTCTTGCCGGACCTTATGGAGATTCTC 539
Query 586 AAGTCTCTTAACATGAAGACTCTCCGAGCTGAGATGGTAACCATTGGTGGTCGGACAAGA 645
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 540 AAGTCTCTTAACATGAAGACTCTCCGAGCTGAGATGGTAACCCTTGGGGGTCGGACAAGA 599
Query 646 AGTGTTCTTGTCGTAGCTGCTGACAAAGAGATGCACGGCGTCGAGTCTGTGCATTTTTTG 705
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 600 AGTGTTCTTGTCGTAGCTGCTGACAAAGAGATGCACGGCGTCGAGTCTGTGCATTTCTTG 659
Query 706 CAAAATGCTCTCAAGTCGCTGCTTGAGCGGTCAAGCAAGTCGTTGATGGAACGTAGTTCT 765
||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 660 CAAAACGCTCTCAAGTCTCTGCTTGAGCGGTCAAGCAAGTCATTGATGGAACGTAGTTCT 719
Query 766 GGTGGTGGAGGAGGAGAACGGTCAAAGCGGCGTCGTGCGCTGGATCACATCATAATGGTG 825
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 720 GGTGGTGGAGGAGGAGAACGGTCAAAGCGGCGCCGTGCGCTGGATCACATCATAATGGTG 779
Query 826 TGAAATGATGAGAATTGAGCACA 848
||||||||||||| ||||| |||
Sbjct 780 TGAAATGATGAGATTTGAGTACA 802
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40639029522
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5