BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41150.2
Length=1568
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483184 jgi|Araly1|483184|fgenesh2_kg.4__2244__AT2G41150.2 2019 0.0
Ahg486114 jgi|Araly1|486114|fgenesh2_kg.5__2106__AT3G56750.1 1074 0.0
> Ahg483184 jgi|Araly1|483184|fgenesh2_kg.4__2244__AT2G41150.2
Length=1381
Score = 2019 bits (1093), Expect = 0.0
Identities = 1296/1390 (93%), Gaps = 29/1390 (2%)
Strand=Plus/Plus
Query 1 ATTAATGGCGACAATGAGC-AAACCC--CATAAGTTAAAAGCCACTCCAG-GATCTCAAA 56
||||||||||||||||||| |||||| |||| || |||||||||||| | |||||||||
Sbjct 1 ATTAATGGCGACAATGAGCAAAACCCATCATAGGTCAAAAGCCACTCC-GAGATCTCAAA 59
Query 57 GACTTGTTCTGTTATGTATAGTCGCAGTTGCATTTCTCCTCCTTTTCACTTCGGTGATCT 116
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 60 GACTTGTTCTGTTATGTATAGTCGCCGTTGCATTTCTCCTCCTTTTCACTTCGGTGATCT 119
Query 117 CCACCGGCGGATTGGCTTTACCGTATCGGACAACCCTAATTGGTTATTTTGTGAGGTCAA 176
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 120 CCACCGGAGGATTGGCTTTACCGTATCGGACAACCCTAATTGGTTATTTCGTGAGGTCAA 179
Query 177 CTCGAAACAAGACACAGCATAGTTTGTCGGACAAGTACTTGTACTGGGGAAACAGAATCG 236
|||||| ||||| ||| ||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 180 CTCGAAGCAAGAGACAACATAGTTTGTCCGACAAGTACTTGTATTGGGGAAACAGAATCG 239
Query 237 ATTGTCCTGGTAAGAACTGTGAGACCTGTGCCGGTTTGGGTCACCAAGAATCTAGCCTTA 296
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 240 ATTGTCCTGGTAAGAACTGCGAGACCTGTGCCGGTTTAGGTCACCAAGAATCTAGCCTTA 299
Query 297 GATGTGCCCTTGAAGAAGCCATGTTTCTGAACAGGACTTTTGTAATGCCATCTCGGATGT 356
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 300 GATGTGCCCTTGAAGAAGCCATGTTTCTTAACAGGACTTTTGTAATGCCATCTCGGATGT 359
Query 357 GCATCAATCCAATACATAACAAGAAGGGTATACTTAATCGATCCAACAATGAAACTAGAG 416
||||||||||||||||||||||||| ||||||||||||||||| | |||||||||| ||
Sbjct 360 GCATCAATCCAATACATAACAAGAAAGGTATACTTAATCGATCTGATAATGAAACTACAG 419
Query 417 AGGAAAGTTGGGAAGTGAGCTCTTGTGCAATGGAATCATTGTATGATATTGATCTCATCT 476
|||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 420 AGGAAAGTTGGGAAGTTAGCTCGTGTGCAATGGAATCACTGTATGATATTGATCTCATCT 479
Query 477 CTGAGAAAATACCTGTGATCTTGGATGACTCGGAAACATGGCACATAATGCTATCGACGA 536
||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 480 CTGAGAAGATACCTGTGATCTTGGATGACTCAGAAACATGGCACATTGTGCTATCGACGA 539
Query 537 GTATGAAATTGAAAGAACGTGGGAGTGCGCATGTATATGGGGCAAACAGGCATGAGCTAA 596
||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||
Sbjct 540 GTATGAAATTGAAAGAACGAGGGAGTGCGCATGTATATGGGGCTAACAGGAATGAGCTAA 599
Query 597 ATGACTCTAGCGACTTTACAAATCTTTTGCTCATTAACCGAACCGCAAGCCCCCTTGCAT 656
|| |||| ||| ||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 600 ATAACTCCAGCCACTTTACAAATCTTTTGCTCATTAACCGAACTGCAAGTCCCCTTGCAT 659
Query 657 GGTTTGTTGAATGCAAGGATCGAGGTAATCGTAGCGACGTCATGCTTCCTTATTCATTTC 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GGTTTGTTGAATGCAAGGATCGAGGTAATCGTAGCGACGTCATGCTTCCTTATTCATTTC 719
Query 717 TCC-AGACTATGGCAGCATCAAGATTGAGAGATGCTGCAGAAAAGATAAAAGCAAAACTT 775
||| | | |||||||||||||||||||||||||||||| ||||||||||| ||| |||||
Sbjct 720 TCCCAAA-TATGGCAGCATCAAGATTGAGAGATGCTGCCGAAAAGATAAAGGCACAACTT 778
Query 776 GGTGATTACGATGCAATCCATGTTCGTCGAGGTGACAAACTGAAAACAAGAAAAGACAGA 835
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GGTGTTTACGATGCAATCCATGTTCGTCGAGGTGACAAACTGAAAACAAGAAAAGACAGG 838
Query 836 TTTCGCGTGGAAAGAAGC-CAGTTTCCACATTTAGATAGAGACACACGGCCAGAATTCAT 894
|||||||| ||||||| | ||||||||||||||||| ||||||||||||||||| |||||
Sbjct 839 TTTCGCGTTGAAAGAA-CTCAGTTTCCACATTTAGACAGAGACACACGGCCAGAGTTCAT 897
Query 895 CATTGGCAGAATTCAGAAACAAATCCCACCAGGACGGACTCTTTTTATCGGTTCTAATGA 954
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 898 CATTGGCAGAATTCAGAAGCAAATCCCACCAGGACGGACTCTTTTTATCGGTTCTAATGA 957
Query 955 AAGAACCCCTG-ATTTCTTTTCACCTCTAGCTATCAGATACAAAGTGGCGTATTCATCGA 1013
|||||||||| ||| ||||||||||||||||||||| || |||||||| ||||||||||
Sbjct 958 GAGAACCCCTGGATT-CTTTTCACCTCTAGCTATCAGGTATAAAGTGGCTTATTCATCGA 1016
Query 1014 ATTTTAGTGAGATTTTGGATCCGATCATCGAGAACAATTACCAGTTGTTCATGGTGGAGA 1073
||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||
Sbjct 1017 ATTTTAGTGAGATTTTGGATCCGATAATCGAAAACAATTATCAGTTGTTCATGGTGGAGA 1076
Query 1074 GGTTGATAATGATGGGTGCAAAGACATTCTTCAAAACATTTAGAGAGTACGAAACCGATC 1133
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1077 GGCTGATAATGATGGGTGCAAAGACATTCTTCAAAACATTTAGAGAGTACGAAACGGATC 1136
Query 1134 TCACTTTGACTGATGATCCGAAAAAGAACAAGAACTGGGAAATACCAGTTTACACCATGG 1193
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1137 TCACTTTGACAGATGATCCGAAAAAGAACAAGAATTGGGAAATACCAGTTTACACCATGG 1196
Query 1194 ATGAAGGCAAAGAAGCAGCAAGCTAAACTATCTATGATCTCACTAGGCACTAGCAAAGTC 1253
|| ||||||||||||||||||||||||||||| ||||||||||||| || || | |
Sbjct 1197 ATAAAGGCAAAGAAGCAGCAAGCTAAACTATCCATGATCTCACTAG-CAA-AG-A----C 1249
Query 1254 TACACAACGATTCAGACAAGAGTCTCATTACTCTTCAAATACTTGGAGTTAAAAGCCTAA 1313
|||||||||||||||||||||||||||| ||| ||||| ||||||||||||||| |||||
Sbjct 1250 TACACAACGATTCAGACAAGAGTCTCATCACTTTTCAATTACTTGGAGTTAAAATCCTAA 1309
Query 1314 TCTTATCTGAAGATTCTATTGCA--TA---G--GAACTCTGTGTATGTGTA-ACCAGAGT 1365
|||| ||||||||||||||||| || | ||| |||||||||||| | |||||||
Sbjct 1310 TCTTGTCTGAAGATTCTATTGCCGGTACTCGAAGAAATCTGTGTATGTG-ACACCAGAGA 1368
Query 1366 CTCTAACAGA 1375
|| ||||||
Sbjct 1369 CT--AACAGA 1376
> Ahg486114 jgi|Araly1|486114|fgenesh2_kg.5__2106__AT3G56750.1
Length=1594
Score = 1074 bits (581), Expect = 0.0
Identities = 1023/1235 (83%), Gaps = 35/1235 (3%)
Strand=Plus/Plus
Query 2 TTAATGGCGACAATGAGCAAACCCCATAA-GTTAAAAGCCACTCCAGGATCTCAAAGACT 60
||||||||||||||||||||| | || || | ||| ||||||| |||||||| | ||
Sbjct 189 TTAATGGCGACAATGAGCAAAGCTCA-AAGGACCAAACCCACTCCTGGATCTCAGCGTCT 247
Query 61 TGTTCTGTTATGTATAGTCGCAGTT-GCATTTCTCCTCCTTTTCACTTCGGTGATCTCCA 119
|||||||||||||||||| | ||| ||||| |||||||| || |||||||||||||||
Sbjct 248 TGTTCTGTTATGTATAGTTG-TGTTCGCATTCCTCCTCCTGCTCTCTTCGGTGATCTCCA 306
Query 120 CCGGCGGA-TTGGCTTTACCGTATCGGAC-AACCCTAATTGGTTATTTTGTGAGGTCAAC 177
|||| | | || || ||||||| || ||||||||| | |||||| ||| |||| |
Sbjct 307 CCGGAAAACTAGG-ATTGCCGTATC-AACAAACCCTAATCGATTATTTCGTGTGGTCTCC 364
Query 178 TCGAAACAAGACACAGCATAGTTTGTCGGACAAGTACTTGTACTGGGGAAACAGAATCGA 237
||| |||| ||||||| |||||||| ||||||||||| |||||||||||||||||
Sbjct 365 TCGTGGTAAGAGACAGCATTCATTGTCGGAGAAGTACTTGTATTGGGGAAACAGAATCGA 424
Query 238 TTGTCCTGGTAAGAACTGTGAGACCTGTGCCGGTTTGGGTCACCAAGAATCTAGCCTTAG 297
||||||||| || ||||| ||||||||||| || ||||||||||||||||||||||| ||
Sbjct 425 TTGTCCTGGCAAAAACTGCGAGACCTGTGCTGGCTTGGGTCACCAAGAATCTAGCCTCAG 484
Query 298 ATGTGCCCTTGAAGAAGCCATGTTTCTGAACAGGACTTTTGTAATGCCATCTCGG-ATGT 356
||||| |||||||||||||||||||| |||||||| ||||||||||| ||| || ||||
Sbjct 485 GTGTGCACTTGAAGAAGCCATGTTTCTTAACAGGACCTTTGTAATGCCTTCT-GGAATGT 543
Query 357 GCATCAATCCAATACATAACAAGAAGGGTATACTTAATCGATCCAACAATGAAACTAGAG 416
|||| |||||||||||||| ||||| |||||||| |||||||| | || |||||| ||
Sbjct 544 GCATAAATCCAATACATAATAAGAAAGGTATACTCAATCGATCTGATAACAAAACTACAG 603
Query 417 AGGAAAGTTGGGAAGTGAGCTCTTGTGCAATGGAATCATTGTATGATATTGATCTCATCT 476
||||| |||||| | |||||||||||||||||| || |||||||| ||||| ||||| |
Sbjct 604 AGGAAGGTTGGGTCGGGAGCTCTTGTGCAATGGACTCCTTGTATGACATTGACCTCATAT 663
Query 477 CTGAGAAAATACCTGTGATCTTGGATGACTCGGAAACATGGCACATAATGCTATCGACGA 536
||||||| ||||| ||||| || |||||||| |||||||||| || | || || || |
Sbjct 664 CTGAGAAGATACCAGTGATATTAGATGACTCCAAAACATGGCATATTGTTCTGTCCACAA 723
Query 537 GTATGAAATTGAAAGAACGTGGGAGTGCGCATGTATA-TGG-GGCAAACAGGCATGA-GC 593
||||||| ||| |||| | |||| ||| ||||| || ||| | || | ||||| | ||
Sbjct 724 GTATGAAGTTGGGAGAAAGAGGGATTGCACATGT-TAGTGGAGTCAGTC-GGCAT-AGGC 780
Query 594 T-AAA-TGACTCTAGCGACTTTACAAATCTTTTGCTCATTAACCGAACCGCAAGCCCCCT 651
| ||| || || | | || | ||||||| ||| ||||||||||||||||||| || ||
Sbjct 781 TAAAAGAGAGTC-A-CTAC--T-CAAATCTCTTGATCATTAACCGAACCGCAAGTCCTCT 835
Query 652 TGCATGGTTTGTTGAATGCAAGGATCGAGGTAATCGTAGCGAC-GTCATGCTTCCTTATT 710
||||||||| ||||| ||||| ||| || | |||||||||| | ||||||||||||||||
Sbjct 836 TGCATGGTTCGTTGAGTGCAAAGATAGAAGCAATCGTAGCG-CTGTCATGCTTCCTTATT 894
Query 711 CATTTCTCCAGACTATGGCAGCAT-C-AAGATTGAGAGATGCTGCAGAAAAGATAAAAGC 768
||||||||| | ||||||||| | | || ||||||| | || || ||||||||||||||
Sbjct 895 CATTTCTCCCTAATATGGCAGC-TGCGAA-ATTGAGAAACGCCGCCGAAAAGATAAAAGC 952
Query 769 AAAACTTGGTGATTACGATGCAATCCATGTTCGTCGAGGTGACAAACTGAAAACAAGAAA 828
| ||||||||||||| ||||| ||||| ||||||||||| |||||||| ||||| |||||
Sbjct 953 ACAACTTGGTGATTATGATGCCATCCACGTTCGTCGAGGGGACAAACTAAAAACCAGAAA 1012
Query 829 AGACAGATTTCGCGTGGAAAGAAGCCAGTTTCCACATTTAGATAGAGACACACGGCCAGA 888
|||||||||| | || ||||| | || ||||| ||| |||| ||||| || || || ||
Sbjct 1013 AGACAGATTTGGAGTTGAAAGGATTCAATTTCCTCATCTAGACAGAGATACGCGCCCTGA 1072
Query 889 ATTCATCATTGGCAGAATTCAGAAACAAATCCCACCAGGACGGACTCTTTTTATCGGTTC 948
|| ||| || |||| || |||| | ||||||| |||| ||||||||||||| |||||
Sbjct 1073 GTTTATCCTTCGCAGGATAGAGAAGCGGATCCCACGAGGAAGGACTCTTTTTATTGGTTC 1132
Query 949 TAATGAAA-GAACCCCTGATTTCTTT-TCACCTCTAGCTATCAGATACAAAGTGGCGTAT 1006
|||||||| ||| |||| ||| ||| || ||||| || ||||| |||||| |||| ||
Sbjct 1133 TAATGAAAGGAA-GCCTGGTTT-TTTCTCTCCTCTCGCCATCAGGTACAAACTGGCTTAC 1190
Query 1007 TCATCGAATTTTAGTGAGATTTTGGATCCGATCATCGAGAACAATTACCAGTTGTTCATG 1066
|||||||||||||| ||||| ||||||| || |||||||| ||||||||||| ||||||
Sbjct 1191 TCATCGAATTTTAGCGAGATCCTGGATCCTATAATCGAGAATAATTACCAGTTATTCATG 1250
Query 1067 GTGGAGAGGTTGATAATGATGGGTG-CAAAGACATTCTTCAAAACATTTAGAGAGTACGA 1125
||||||| || |||||||||| | |||| |||| |||||||||||||| |||||||||
Sbjct 1251 ATGGAGAGACTGGTAATGATGGGAGCCAAA-ACATACTTCAAAACATTTAAAGAGTACGA 1309
Query 1126 AACCGATCTCACTTTGACTGATGATCCGAAAAAGAACAAGAACTGGGAAATACCAGTTTA 1185
||| |||||||| || ||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1310 AACAGATCTCACCTTAACTGATGATCCTAAAAAGAACAAGAACTGGGAAATACCAGTGTA 1369
Query 1186 CACCATGGATGAAGGCAAAGAAGCAGCAAGCTAAA 1220
||||||||||||| | ||||||| |||||||||||
Sbjct 1370 CACCATGGATGAAAGAAAAGAAGAAGCAAGCTAAA 1404
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58735157790
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5