BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41180.1
Length=835
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483187 jgi|Araly1|483187|fgenesh2_kg.4__2247__AT2G41180.1 1046 0.0
> Ahg483187 jgi|Araly1|483187|fgenesh2_kg.4__2247__AT2G41180.1
Length=837
Score = 1046 bits (566), Expect = 0.0
Identities = 766/856 (89%), Gaps = 40/856 (5%)
Strand=Plus/Plus
Query 1 GAGAGCTCACACATCTAAATTTTTCTCCATATTACAAAAGAACT-AAAGAAGATGGATCA 59
||||||||||||||||||| | |||| | ||||||||||||| | |||||||||||||||
Sbjct 1 GAGAGCTCACACATCTAAAATCTTCT-CTTATTACAAAAGAAGTAAAAGAAGATGGATCA 59
Query 60 GTCATCATCAACGTTGCTCATAAACCAGAGAAAGTCATCATCGTCTCCGACTAGGATCCC 119
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 60 GTCATCATCAACGTTGCTCATAAACCAGAGAAAGTCATCATCGTCTCCGACGAGGATACC 119
Query 120 ACCTAAGCAGAAGAGGAAGTCAACGACTACGC-ACAAACCCATCAAAGTCCGTTACATAT 178
||| ||||||||||||||||||||||| || | |||||||||||||||||||||||||||
Sbjct 120 ACCGAAGCAGAAGAGGAAGTCAACGACGAC-CAACAAACCCATCAAAGTCCGTTACATAT 178
Query 179 CAAATCCGATGAGAGTCGAGACTTGTCCTTCTAAGTTCAGAGAGCTTGTTCAAGAACTCA 238
| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 179 CTAACCCGATGAGAGTCGAGACTTGTCCTTCTAAGTTCAGAGAGCTCGTTCAAGAACTCA 238
Query 239 CCGGTCAAGACGCCGCTGATCTACCACCGTCGCCCACCACTTTTACCGCCGTAGATCTCC 298
|||||||||||||||| |||||||||||||| ||||||||||| ||| | ||||||||
Sbjct 239 CCGGTCAAGACGCCGCCGATCTACCACCGTCACCCACCACTTTCGTCGCAGCAGATCTCC 298
Query 299 ACCGTCCGTGTGAGTCGGAGATGAACT-TAGAGCCGTTGGATGGAGAGGTCCGTGGAGAG 357
|||| |||||||||||||||||||||| | |||||||||||||| ||||| ||| |||
Sbjct 299 ACCGCCCGTGTGAGTCGGAGATGAACTCT-GAGCCGTTGGATGGTGAGGTTCGT---GAG 354
Query 358 TATTATTCACCGTTGGATGAGGAAGTGTTTAATGCTCCTCAGATGTCGGCAGGTCTTTCT 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 TATTATTCACCGTTGGATGAGGAAGTGTTTAATGCTCCTCAGATGTCGGCAGGTCTTTCT 414
Query 418 GGTTTTTTCTCGTCTGGATTTTACAATGTTAACGCTTTAGGAAGCATTGGTTCTCTCTGA 477
||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||
Sbjct 415 GGTTTTTTCTCGTCTGGGTTTTACAATGTGAATGCTTTAGGAAGCATTGGTTCTCTCTGA 474
Query 478 ATTTTAAACTATGAATGTTTTGTTTC-GGCACTGAAACACCGATCACGAAGAATAAACCA 536
|| | ||| | |||||||| ||||| |||| ||||||||||||||||||||||||||||
Sbjct 475 ATATAAAAAAA-GAATGTTTAGTTTCCGGCAGTGAAACACCGATCACGAAGAATAAACCA 533
Query 537 TCTATAGTTTTAGGGTTTTC-----ATCAAAACCTATATATGGATATATTACATATATAG 591
|||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||
Sbjct 534 TCTATAGTTTTAGGGTTTTCTTTTCATCAAAACCTATATATAGATATATAACATATATAG 593
Query 592 ttttttttCT---CGCGAATTATTTACGTTTGTGAGTATATATAGAAATCTTTCATTTGT 648
|||||||| | |||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 594 TTTTTTTTTTTGTCGCGAATTATTTGCGTTTGTGAGTATATAAAGAAATCTTTCATTTGT 653
Query 649 TTGTGGtttttttATTTTATAATAATAATCAAACCGTATTAGTTTTAGTTGGGTTTATTG 708
||||| | ||||| ||| |||||||| ||| ||||||||| || |||||||||
Sbjct 654 TTGTG-TGTTTTT-TTT-ATAATAATC--CAA-CCGTATTAG-----GT-GGGTTTATTT 701
Query 709 GTGTAGTTATGTAATAAT-T-AAC---CTCA-AAA-TC--CCAATTTGGTGGTAGTGATT 759
||||| ||||||||| | || || | ||| | |||||||||||||| |||||
Sbjct 702 GTGTAAATATGTAATAGCCTCAAGTAGCTTATAAAATTTTCCAATTTGGTGGTAATGATT 761
Query 760 TTGTGATCAGTTTAATCTCTGGTGTAAATGATCACAAACGGAAAAGAAATAATAATCCAT 819
||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||
Sbjct 762 TTGTGATCAGTTTAATCTCCGATGTAAATGATCACAAACGGAAAAGAAATAATAGTCCAT 821
Query 820 ATAGAGCTTTTAAGTT 835
|||||||||||||||
Sbjct 822 TTAGAGCTTTTAAGTT 837
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30879562770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5