BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41190.1
Length=2155
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934938 jgi|Araly1|934938|scaffold_402926.1 2710 0.0
> Ahg934938 jgi|Araly1|934938|scaffold_402926.1
Length=1647
Score = 2710 bits (1467), Expect = 0.0
Identities = 1592/1652 (96%), Gaps = 9/1652 (1%)
Strand=Plus/Plus
Query 242 TTACTTGGGTTTGTTC-GAAATATGGAGGACAAGAACAATGATAAGGAGaaaaaaaCCGA 300
||| |||| ||||||| |||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 1 TTAGTTGGCTTTGTTCGGAAAAATGGAGGACAAGAACAATGATAAGGAGAAAAAACCCGA 60
Query 301 CGTTACGTTCGAAGATGACGAAGATAACGAAGATCTAGAAGACAACAGCAGTAAGTACGA 360
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 61 CTTTACGTTCGAAGATGACGAAGATAACGAAGATCTAGAAGAGAACAGCAGTAAGTACGA 120
Query 361 GAACGACAGTGAAACTGATCAAAGCGATCTCGGAGATCTTCCTGGTGATGCTGTTGATCG 420
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 121 GAACGACAGTGAAACTGATCAAAGCGATCTCGGAGATCTTCCTGGTGATGC---TGATGG 177
Query 421 TGACGACGACATCGATGAACCTTTCATTTCCCAGGTTCAATGGCCTCAAAGCTTCAGGGA 480
|| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 178 TGGCGACGACAACGATGAACCTTTCATTTCCCAGGTTCAATGGCCTCAAAGCTTTAGGGA 237
Query 481 AACGACTGATTCTTATACGATTGCGGCATCACCAATCTTCGGGTCGCTCAGGAGTAATCC 540
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 238 AACGACTGATTCTTATACGATTGCTGCATCACCAATCTTCGGGTCGCTCAGGAGTAA--- 294
Query 541 TCCGAGTTTCTATAGAGCCAGCAGAAGTAATTTAGATGTTGAGTCAAAAGCACCTTTGCT 600
|||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||
Sbjct 295 TCCGAGTTTCTATAGAGCGAGCAGAAGTAATTTAGATGTTGAGTCTAAAGCCCCTTTGCT 354
Query 601 TCCTGAGAGGCATGATGATTCAGACAAAGCCTCAGCTACACAATCTGCTTGGTCTCATAA 660
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 355 TCCTGAGAGGCATGAAGATTCAGACAAAGCCTCAGCTACACAATCAGCTTGGTCTCATAA 414
Query 661 AGGCTCATTTGCTGAGGAATTGCCCATTGGTGGCTATGGATGCAGCGTCATTCAAACCAT 720
||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 415 AGGCTCATTTGCTGACGAATTGCCTATTGGTGGCTATGGATGCAGCGTCACTCAAACCAT 474
Query 721 TTTCAATGCTATTAATGTAATGGCTGGAGTTGGACTTCTCTCAACACCTTATACAGTGAA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 TTTCAATGCTATTAATGTAATGGCTGGAGTTGGACTTCTCTCAACACCTTATACAGTGAA 534
Query 781 AGAAGCTGGTTGGGCAAGTATGGTAATTCTTCTCTTATTTGCTGTTATTTGTTGTTACAC 840
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 535 AGAAGCTGGTTGGGCAAGTATGGTGATTCTTCTCTTATTTGCTGTTATTTGTTGTTACAC 594
Query 841 TGCTACTTTAATGAAAGACTGTTTCGAGAACAAGACCGGCATTATCACTTATCCTGATAT 900
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 595 TGCTACTTTAATGAAAGACTGTTTCGAGAACAAGACCGGTATTATCACTTATCCTGATAT 654
Query 901 TGGAGAAGCAGCTTTTGGCAAATATGGTCGTATTCTTATCTGTATGCTATTGTACACAGA 960
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 655 TGGAGAAGCAGCTTTTGGGAAATATGGTCGTATTCTCATCTGTATGCTATTGTACACAGA 714
Query 961 ACTATATTCATATTGTGTTGAATTCATCATTTTGGAAGGAGATAACCTTACCGGGCTTTT 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 ACTATATTCATATTGTGTTGAATTCATCATTTTGGAAGGAGATAACCTTACCGGGCTTTT 774
Query 1021 CCCTGGTACATCCTTGGATTTGCTCGGGTTCCGACTTGACTCTAAGCATTTATTTGGAAT 1080
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 775 CCCTGGTACATCCTTGGATTTGCTCGGGTTCCGACTTGACTCTAAACATTTATTTGGAAT 834
Query 1081 CTTAACTGCTCTCATTGTTCTTCCAACTGTTTGGTTGAAAGATCTACGCATCATTTCCTA 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 CTTAACTGCTCTCATTGTTCTTCCAACTGTTTGGTTGAAAGATCTACGCATCATTTCCTA 894
Query 1141 CCTCTCAGCCGGTGGAGTTATCGCAACCGCTTTGATAGCAGTAAGCGTGTTTTTCCTCGG 1200
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 895 CCTCTCAGCCGGTGGAGTTATTGCAACCGGTTTGATAGCAGTAAGCGTGTTTTTCCTCGG 954
Query 1201 TACAACGGGCGGGATTGGGTTTCATCACACCGGGCAGGCTGTGAAATGGAACGGGATACC 1260
|||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 955 CACAACGGGTGGGATTGGGTTTCATCACACCGGGCAGGCTGTGAAATGGAATGGTATACC 1014
Query 1261 GTTTGCAATTGGTATATACGGGTTTTGCTATTCAGGACATTCAGTGTTCCCAAATATATA 1320
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 ATTTGCAATTGGTATATACGGGTTTTGCTATTCAGGACATTCAGTGTTCCCAAATATATA 1074
Query 1321 CCAATCCATGGCTGATAAAACCAAATTCAACAAAGCAGTGATCACTTGTTTCATTATATG 1380
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 1075 CCAATCCATGGCTGATAAAACCAAATTCAACAAAGCAGTGATCACATGTTTCATTTTATG 1134
Query 1381 TGTTTTGTTATACGGAGGAGTTGCAATCATGGGTTATCTCATGTTTGGAGAAGCTACCTT 1440
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1135 TGTTTTGTTATACGGAGGAGTTGCAATCATGGGTTATCTCATGTTTGGTGAAGCTACCTT 1194
Query 1441 GTCTCAGATTACACTAAACATGCCACAGGACCAATTTTTCTCAAAAGTGGCACAGTGGAC 1500
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1195 GTCTCAGATTACACTAAACATGCCACAGAACCAATTTTTCTCAAAAGTGGCACAGTGGAC 1254
Query 1501 AACGGTTGTGAGTCCGTTTACAAAATACGCTCTCCTGATGAATCCACTTGCAAGGAGTAT 1560
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1255 AACGGTTGTGAATCCGTTTACAAAATACGCTCTCCTGATGAATCCACTTGCCAGGAGTAT 1314
Query 1561 AGAAGAACTATTACCGGAAAGAATGTCAGAGAACATATGGTGCTTTCTTCTTCTAAGAAC 1620
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 AGAAGAACTATTACCTGAAAGAATGTCAGAGAACATATGGTGCTTTCTTCTTCTAAGAAC 1374
Query 1621 AGCACTCGTCGCTTCTTCTGTTTGTTCTGCTTTCCTTATTCCATTTTTTGGTCTTATGAT 1680
|| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1375 AGGACTCGTCGCTTCCTCTGTTTGTTCTGCTTTCCTTATCCCATTTTTTGGTCTTATGAT 1434
Query 1681 GGCTCTTATAGGATCTCTTCTCAGTATACTAGTGGCAATAATAATGCCAGCTTTATGCTT 1740
|||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||
Sbjct 1435 GGCTCTTATAGGATCTCTTCTCAGTATACTCGTGGCAATAGTAATGCCAGCTCTATGCTT 1494
Query 1741 CATAAAGATAATGGGGAACAAAGCAACAAGAACACAGATGATTCTGAGTTCGATCA-TTG 1799
|||||||||||||||||||||||| || ||||||||||||||||||||||||| || |||
Sbjct 1495 CATAAAGATAATGGGGAACAAAGCTACTAGAACACAGATGATTCTGAGTTCGA-CAATTG 1553
Query 1800 TGGCCATCGGGGTGGTAAGCGGGACCTTGGGGACATATTCTTCGGTGGCAAAGATCATTA 1859
||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1554 TGGCCATCGGGTTGGTAAGCGGAACCTTGGGGACATATTCTTCGGTTGCAAAGATCATTA 1613
Query 1860 GGAACTATCAGTGAAGGAACTCCATGACAAAG 1891
|||||||||| ||||| |||||||||||||||
Sbjct 1614 GGAACTATCAATGAAGAAACTCCATGACAAAG 1645
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81094131605
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5