BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41200.1
Length=720
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483189 jgi|Araly1|483189|fgenesh2_kg.4__2249__AT2G41200.1 1088 0.0
> Ahg483189 jgi|Araly1|483189|fgenesh2_kg.4__2249__AT2G41200.1
Length=704
Score = 1088 bits (589), Expect = 0.0
Identities = 671/709 (95%), Gaps = 12/709 (2%)
Strand=Plus/Plus
Query 2 aaaaaaaCAAGAAGAAGGAAGTTATCACAATATGGGTCAAGCTCTCAATACCGCAAAAGG 61
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAAAAGAAGAAGAAGGAAGTTATCACAATATGGGTCAAGCTCTCAATACCGCAAAAGG 60
Query 62 TAAAGGAGAGGTAGACGCG-AAAGACTTGGAAGCTATGGCTGAAAATTGCTACCGCAAAC 120
|||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||
Sbjct 61 GAAAGGAGAGGTAGACG-GAAAAGACTTGGAAGCTATGGTTGAAAATTGCTACCGCAAAC 119
Query 121 GCTTAGAAGaaaaaaaTGACGATCAAGAATGGTCCTTT-GGCGACTTCTACCGCATTGTG 179
||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 120 GCTTAGAAGAACAAAATGACGATCAAGAATGGT-CTTTCGGCGACTTCTACCGCATTGTG 178
Query 180 GCTGAAGCAGTCGAGGAAATTAACAGAAGACTCGGTGGCACTCAACTTAAGGTGCCAAGT 239
|||||||| |||||||||||||| |||||||||||||| || ||||||||||||||||||
Sbjct 179 GCTGAAGCTGTCGAGGAAATTAATAGAAGACTCGGTGGTACACAACTTAAGGTGCCAAGT 238
Query 240 GTTGAGAAACTACAACAAGCTTATGAGATACACAATCTCGGGCAGGGGAAGAAGCTATCG 299
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 239 GTTGAGAAACTACAACAAGCTTATGAGATACACAATCTCGGGGAGGGGAAGAAGCTATCG 298
Query 300 AAGGACGAGTTTCAGAAGCTTCTTCAAGAGGTTTTAATCGGAGTTGGGTTCACCGGCGTC 359
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 299 AAGGACGAGTTTCAGAAGCTTCTTCAAGAGGTTTTAATTGGAGCTGGGTTCACCGGCGTC 358
Query 360 GGAGGAGTAAAGGAATTTCTACTTTTCATCTTCGGAGTTCCTGCGATCGCCGTCTTCATT 419
||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 359 GGAGGAGTAAAAGAGTTTCTACTATTCATCTTCGGAGTTCCTGCGATCGCCGTCTTCATT 418
Query 420 AAGAACCGTATAGCTCCGACGTCCGTTCCCAACGACTTGTTTATCCCCGCCATCACTTCC 479
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 419 AAGAACCGTATAGCTCCGACGTCCATTCCCAACGACTTGTTTATCCCCGCCATCACATCC 478
Query 480 GCCACCGTCTTCCTCCTCGCCAAGCTCAATAAGATATGAAGTCTCTACTAATTGTTTGAT 539
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 479 GCCACCGTCTTCCTCCTCGCCAAGCTCAATAAGATATGA---CTCTACTAATTGTTTGAT 535
Query 540 CCTTTCGAGCTTTGCTTTGTTTGCTAAATTTGTATTGGTGATTTGATTATATGTGTTTG- 598
|||||||||||||||||||||| || ||||| ||||||||||||||| |||||||| ||
Sbjct 536 CCTTTCGAGCTTTGCTTTGTTTTCTTAATTTATATTGGTGATTTGATAATATGTGTGTGG 595
Query 599 A-TACACGGAGAAGCTTAAAGTTTCACTCTTTGAGTTCATTTAC-TAGATTGATGAAAAG 656
| ||| ||| ||||||||||||||||||||||||||||| |||| | |||||||||||||
Sbjct 596 AATACTCGGTGAAGCTTAAAGTTTCACTCTTTGAGTTCACTTACGT-GATTGATGAAAAG 654
Query 657 Gaaaaaaaaa-TGAACTTATGTTGTTCGACAGAATGCCTCAACGAGTTT 704
|||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 655 GAAAAAAAAAATGAACTTATGTTGTTCGACAGAATGCCTCAGTGAGTTT 703
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26495427315
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5