BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41210.1
Length=2765
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934940 jgi|Araly1|934940|scaffold_402928.1 4078 0.0
Ahg898637 jgi|Araly1|898637|Al_scaffold_0005_2603 2396 0.0
> Ahg934940 jgi|Araly1|934940|scaffold_402928.1
Length=2359
Score = 4078 bits (2208), Expect = 0.0
Identities = 2309/2359 (98%), Gaps = 2/2359 (0%)
Strand=Plus/Plus
Query 196 GTTTCCTTAGTTTAACATAATGAGCAAGGACCAAAGCTATGTTCTAAAAGCATGGGAGGT 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 GTTTCCTTAGTTTAACATAATGAGCAAGGACCAAAGCTATGTTCTAAAAGCATGGGAGGT 61
Query 256 GACCGTGCGAAAGACTCAGCAAGCGAAGAAGCGGGCTAATAGCGTTTTTGGAACAGTATC 315
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 62 GACCGTGCGAAAGACTCAGCAAGCCAAGAAGCGGGCAAATAGCGTTTTTGGAACAGTATC 121
Query 316 GGTAGCTCCACATACAGATAATGATACTACAACTGATGATAATGACGATGAGACCACCAC 375
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 122 GGTAGCTCCACATACAGATAATGACACTACAACTGATGAAAATGACGATGAGACCACCAC 181
Query 376 TAACAGGAGCAGCTTAGAGGAATTCTACCATGCCGAGAGAGTGCTTCCCAATGGGGACTA 435
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 182 TAACAGGAGCAGCTCAGAGGAATTCTACCATGCTGAGAGAGTGCTTCCCAATGGGGACTA 241
Query 436 CTACACGGGGCAATGGTATGATAGTTTTCCTCATGGCCATGGGAAATACCTCTGGACAGA 495
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 242 CTACACAGGGCAATGGTATGATAATTTTCCTCATGGCCATGGGAAATACCTCTGGACAGA 301
Query 496 CGGCTGCATGTACATCGGTGACTGGTACAATGGGAAAACCATGGGGAATGGAAAGTTTGG 555
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 302 CGGCTGCATGTACATCGGTGACTGGTACAATGGGAAAACCATGGGGAATGGAAAATTTGG 361
Query 556 GTGGCCATCTGGTGCCACATACGAAGGAGAGTTTAAAAGTGGTTACATGGATGGTATTGG 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 GTGGCCATCTGGTGCCACATACGAAGGAGAGTTTAAAAGTGGTTACATGGATGGTATTGG 421
Query 616 GACATACACGGGTCCGAGTGGAGATGCTTATAAAGGTCAGTGGGTGATGAACCTGAAGCA 675
||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 GACGTACACAGGTCCAAGTGGAGATGCTTATAAAGGTCAGTGGGTGATGAACCTGAAGCA 481
Query 676 TGGACATGGCGTCAAGAGTTTTGCAAATGGAGATGCCTATGATGGTGAATGGAGGAGAGG 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 TGGACATGGCGTCAAGAGTTTTGCAAATGGAGATGCCTATGATGGTGAATGGAGGAGAGG 541
Query 736 TTTGCAAGAAGGTCAAGGAAAGTACCAATGGAGCGATGGGAGTTATTACATCGGCGAATG 795
|||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||
Sbjct 542 TTTGCAAGAAGGTCAAGGAAAGTATCAATGGAGCGATGGGAGCTATTACATCGGTGAATG 601
Query 796 GAAGAATGGTACGATCTGTGGCAAAGGGAGTTTTGTTTGGACAAATGGAAATAGATACGA 855
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 602 GAAGAATGGTACGATCTGTGGCAAAGGGAGTTTTGTTTGGACAAATGGAAATAGGTACGA 661
Query 856 CGGGTTTTGGGATGAAGGGTTCCCCAGAGGGAATGGGACCTTCAAATGGGATAATGGGAG 915
||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 662 CGGTTTTTGGGATGAAGGGTTCCCCAGAGGGAATGGGACGTTCAAATGGGACAATGGGAG 721
Query 916 TTTCTATGTTGGCCATTGGTCTAAGGATCCAGAGGAAATGAATGGTACATATTATCCGTC 975
||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||
Sbjct 722 TTTCTATGTTGGCCATTGGTCCAAGGATCCAGAGGAAATGAACGGTACTTATTATCCGTC 781
Query 976 AGGAAATGAAGGGAATCTTGAATGGGATCCTAAAGATTTGTTTAATAATCTAAGTGAGTA 1035
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 782 AGGAAATGAAGGGAATCTTGAATGGGATCCTAAAGATTTGTTTAATAATCTTAGTGAGTA 841
Query 1036 CACGATCTGCAGCGGCGAGAGGGTTCCTACATTGCCTTCACAGAAGAAACTATCTGTTTG 1095
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 842 CACGATCTGCAGCGGCGAGAGGGTTCCTACGTTGCCTTCACAGAAGAAACTATCTGTTTG 901
Query 1096 GAACTCTTCCAAGCGGATAGAGAAACCTAGGAGGACGTCAGTTGATGGGAGAGTAAGTGT 1155
||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 902 GAACTCTTCCAAGCGTATAGAGAAACCTAGGAGGACGTCGGTTGATGGGAGGGTAAGTGT 961
Query 1156 GGGCGTTGATAGAGCGTTTGAGAAGATGAATATGTGGGGGAACGAAATCGGTGAAGGAGG 1215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 GGGCGTTGATAGAGCGTTTGAGAAGATGAATATGTGGGGGAACGAAATCGGTGAAGGAGG 1021
Query 1216 TGCTGATATGAGGAAGGAGTTGGATGCAGAGTTGATGAGATTGGACGCTGAAGGTCTTCA 1275
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1022 TGCTGATATGAGGAAGGAGTTGGATGCAGAGTTGATGAGATTGGACGCTGAAGGTATTCA 1081
Query 1276 GAGCCTGAAATCGAGCCCTGTTCCTATGAAACTGCCAAAGGCAGGGAGGAAGCAAGGGGA 1335
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1082 GAGCCTGAAGTCGAGCCCTGTTCCTATGAAACTGCCAAAGGCAGGGAGGAAACAAGGGGA 1141
Query 1336 GACGATATCCAAAGGCCATCGCAATTACGAGCTTATGCTTAATCTACAGTTAGGAATCAG 1395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1142 GACGATATCCAAAGGCCATCGCAATTACGAGCTTATGCTTAATCTACAGTTAGGAATCAG 1201
Query 1396 GCATTCTGTCGGAAGACAAGCTCCAGCGGCATCTCTTGATCTGAAGCCTTCAGCTTTCGA 1455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1202 GCATTCTGTCGGAAGACAAGCTCCAGCGGCATCTCTTGATCTGAAGCCTTCAGCTTTCGA 1261
Query 1456 TCCAAAAGATAAGATATGGAGGAGGTTTCCGCGCGAAGGAACCAAGTACACACCTCCACA 1515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1262 TCCAAAAGATAAGATATGGAGGAGGTTTCCGCGCGAAGGAACCAAGTACACACCTCCACA 1321
Query 1516 TCAATCTACTGAATTCAAATGGAAAGATTATTGCCCACTAGTTTTCAGGAGCTTGAGGAA 1575
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1322 TCAGTCTACTGAATTCAAATGGAAAGATTATTGCCCACTAGTTTTCAGGAGCTTGAGGAA 1381
Query 1576 GCTATTCAAAGTAGACCCAGCTGATTACATGTTATCGATCTGTGGGAATGATGCCCTTCG 1635
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1382 GCTATTCAAAGTCGACCCAGCTGATTACATGTTATCTATCTGTGGGAATGATGCCCTTCG 1441
Query 1636 AGAACTATCATCCCCTGGAAAAAGTGGGAGttttttttATTTAACAAACGATGATCGTTA 1695
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1442 AGAACTATCATCCCCTGGAAAAAGTGGGAGCTTTTTTTATTTAACAAACGATGATCGTTA 1501
Query 1696 CATGATAAAAACAATGAAGAAGTCGGAAACAAAAGTGCTTCTGGGGATGCTTGCAGCATA 1755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1502 CATGATAAAAACAATGAAGAAGTCGGAAACAAAAGTGCTTCTGGGGATGCTTGCAGCATA 1561
Query 1756 TTATAACCATGTTCGAGCATTTGAGAACTCTTTGGTAATCAGATTCTTTGGTCTACACTG 1815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1562 TTATAACCATGTTCGAGCATTTGAGAACTCTTTGGTAATCAGATTCTTTGGTCTACACTG 1621
Query 1816 TGTGAAATTGAATGGACCAACCCAAAAGAAGGTCCGATTCGTCATTATGGGTAATCTGTT 1875
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1622 TGTGAAATTGAATGGACCAACCCAAAAGAAGGTGCGATTCGTCATTATGGGTAATCTGTT 1681
Query 1876 TTGTTCTAAGTACTCTGTTCACAGACGCTTTGATCTAAAAGGATCTTCTCTTGGCCGTAC 1935
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1682 TTGTTCTAAGTACTCTGTTCACAGACGCTTTGATCTAAAAGGATCTTCTCTTGGCCGTAC 1741
Query 1936 AACTGACAAACCTGAATCAGAAATCGATTCAAACACGATCTTAAAAGACCTCGACCTGAA 1995
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1742 AACTGACAAACCTGAATCAGAAATCGATTCAAACACGATCTTAAAAGACCTCGACCTGAA 1801
Query 1996 TTTCATTTTCAGATTGCAGAAAGCATGGTACCAAGAATTCATCAGGCAAATCGATAAAGA 2055
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1802 TTTCATTTTCAGATTGCAGAAAGCATGGTACCAAGAATTCATCAGGCAAATCGATAAAGA 1861
Query 2056 CTGCGAGTTTCTAGAACAGGAGAGAATCATGGATTACAGTCTTCTAGTTGGGATTCACTT 2115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1862 CTGCGAGTTTCTAGAACAGGAGAGAATCATGGATTACAGTCTTCTAGTTGGGATTCACTT 1921
Query 2116 CAGAGAAGCTTCTGTCGCTGGAGAGCTGATTCCTTCTGGAGCTCGAACGCCCATTGGTGA 2175
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1922 CAGAGAAGCTTCTGTCGCTGGAGAGCTGATTCCTTCTGGAGCTCGAACACCTATTGGTGA 1981
Query 2176 ATCAGAAGAAGAATCAGGCCCTCGTCTTTCTAGAGCAGAGGTTGATGAGCTTCTTTCAGA 2235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1982 ATCAGAAGAAGAATCAGGCCCTCGTCTTTCTAGAGCAGAGGTTGATGAGCTTCTTTCAGA 2041
Query 2236 TCCCTCAAGGTGGGCAAGTATTAGATTGGGGACAAACATGCCAGCACGTGCAGAGAGAAC 2295
|||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 2042 TCCCTCTAGGTGGGCAAGTATTAGATTGGGGACCAACATGCCAGCGCGTGCAGAGAGAAC 2101
Query 2296 GATGAGAAAAAACGACAGCGAGCTGCAGCTTGTGGGAGAGCCTACAGGAGAGTTCTACGA 2355
|||||||| |||||| | ||||| |||||||||||||| ||||||||||||||||||||
Sbjct 2102 AATGAGAAAGAACGACTGTGAGCTTCAGCTTGTGGGAGAACCTACAGGAGAGTTCTACGA 2161
Query 2356 AGTGGTGATGATATTTGGTATAATTGACATTCTTCAGGATTATGATATCAGCAAGAAGCT 2415
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2162 AGTGGTGATGATATTTGGCATAATTGACATTCTTCAGGATTATGATATCAGCAAGAAGCT 2221
Query 2416 TGAACACGCTTACAAGAGCATACAGTATGATCCTTCCTCTATATCTGCGGTTGATCCGAG 2475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2222 TGAACACGCTTACAAGAGCATACAGTATGATCCTTCCTCTATATCTGCGGTTGATCCGAG 2281
Query 2476 ACAATACTCTAGGCGTTTCCGTGACTTTATCTTCAAGGTCTTCACAGATGACAATTGAGA 2535
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2282 ACAATACTCGAGGCGTTTCCGTGACTTTATCTTCAAGGTCTTCACAGATGACAATTGAGA 2341
Query 2536 TGGTCTCAAGT-TGTCTCT 2553
||||||||| | |||||||
Sbjct 2342 TGGTCTCAA-TATGTCTCT 2359
> Ahg898637 jgi|Araly1|898637|Al_scaffold_0005_2603
Length=2340
Score = 2396 bits (1297), Expect = 0.0
Identities = 2007/2351 (85%), Gaps = 43/2351 (2%)
Strand=Plus/Plus
Query 215 ATGAGCAAGGACCAAAGCTATGTTCTAAAAGCATGGGAGGTGACCGTGCGAAAGACTCAG 274
||||||||||| ||||||| |||||| || || |||||||||||||| ||||||| ||
Sbjct 1 ATGAGCAAGGAACAAAGCTGTGTTCTTAAGGCTTGGGAGGTGACCGTAAGAAAGACCCAA 60
Query 275 CAAGCGAAGAAGCGGGCTAATAGCGTTTTTGGAACAGTATCGGTAGCTCCACATACAGAT 334
|||||||||||||| || || ||| ||||||| || ||||| ||| ||||||| |||||
Sbjct 61 CAAGCGAAGAAGCGTGCAAACAGCATTTTTGGGACGGTATCTGTATCTCCACAAACAGAC 120
Query 335 AATG--A-TACTAC-A--ACTGATGATAATGACGATGAGACCACCACTAACAGGAGCAGC 388
||| | |||||| | ||||| || | |||||||||||||| ||||||||| ||||||
Sbjct 121 GATGATACTACTACGACGACTGAGGAGATTGACGATGAGACCAGCACTAACAGAAGCAGC 180
Query 389 TTAGAGGAATTCTACCATGCCGAGAGAGTGCTTCCCAATGGGGACTACTACACGGGGCAA 448
||| |||||| |||||||| |||||| | ||||| ||||||||||| ||||| ||||||
Sbjct 181 ATAGGGGAATTGTACCATGCAGAGAGAATACTTCCTAATGGGGACTATTACACTGGGCAA 240
Query 449 TGGTATGATAGTTTTCCTCATGGCCATGGGAAATACCTCTGGACAGACGGCTGCATGTAC 508
|||||||||||||||||||| || || || || || || |||||||| || |||||||||
Sbjct 241 TGGTATGATAGTTTTCCTCACGGGCACGGCAAGTATCTTTGGACAGATGGTTGCATGTAC 300
Query 509 ATCGGTGACTGGTACAATGGGAAAACCATGGGGAA-TGGAAAGTTTGGGTGGCCATCTGG 567
|| |||||||||||||| ||||| || || ||||| || ||||| |||||||| |||||
Sbjct 301 ATTGGTGACTGGTACAACGGGAAGACTAT-GGGAAGAGGGAAGTTCGGGTGGCCTTCTGG 359
Query 568 TGCCACATACGAAGGAGAGTTTAAAAGTGGTTACATGGATGGTATTGGGAC-ATACACGG 626
|||||| || ||||| || ||||||||||| |||||||||||| || || | ||||| |
Sbjct 360 TGCCACTTATGAAGGCGAATTTAAAAGTGGATACATGGATGGTGTT-GGCCTTTACACAG 418
Query 627 GTCCGAGTGGAGATGCTTATAAAGGTCAGTGGGTGATGAACCTGAAGCATGGACATGGCG 686
|||| ||||||||| ||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 419 GTCCTAGTGGAGATACTTATAAAGGTCAGTGGGTGATGAACCTGAAACATGGGCATGGAA 478
Query 687 TCAAGAGTTTTGCAAATGGAGATGCCTATGATGGTGAATGGAGGAGAGGTTTGCAAGAAG 746
||||| |||| || |||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 479 TCAAGCGTTTCGCGAATGGAGATGTGTATGATGGTGAATGGAGGAGGGGTTTGCAAGAAG 538
Query 747 GTCAAGGAAAGTACCAATGGAGCGATGGGAGTTATTACATCGGCGAATGGAAGAATGGTA 806
||||||||||| || ||||| |||||||| |||||||| || ||||||||||| ||||
Sbjct 539 CCCAAGGAAAGTATCAGTGGAGAGATGGGAGCTATTACATGGGGGAATGGAAGAACGGTA 598
Query 807 CGATCTGTGGCAAAGGGAGTTTTGTTTGGACAAATGGAAATAGATACGACGGGTTTTGGG 866
||||||||||||||| | |||| ||||||| |||| |||||||||||||| |||||||
Sbjct 599 TGATCTGTGGCAAAGGTACTTTTATTTGGACGGATGGGAATAGATACGACGGATTTTGGG 658
Query 867 ATGAAGGGTTCCCCAGAGGGAATGGGACCTTCAAATGGGATAATGGGAGTTTCTATGTTG 926
|||| || ||||| | ||| |||||||| |||||||||| | ||||||||||||| ||||
Sbjct 659 ATGACGGTTTCCCTAAAGGAAATGGGACTTTCAAATGGGCTGATGGGAGTTTCTACGTTG 718
Query 927 GCCATTGGTCTAAGGATCCAGAGGAAATGAATGGTACATATTATCCGTCAGGAAATGAAG 986
| ||||||||||| ||||| || |||||||| ||||| |||||||| || ||| | |||
Sbjct 719 GTCATTGGTCTAATGATCCGGAAGAAATGAACGGTACTTATTATCCATCGGGAGACGAAA 778
Query 987 GGAATCTTGAATGGGATCCTAAAGATTTGTTTAATAATCTAAGTGAGTACACGATCTGCA 1046
|||||| |||||||||||||||||| ||||| |||||| |||||||||| ||||||||
Sbjct 779 GGAATCCTGAATGGGATCCTAAAGACGTGTTTGGTAATCTGAGTGAGTACAAGATCTGCA 838
Query 1047 GCGGCGAGAGGGTTCCTACATTGCCTTCACAGAAGAAA-CTATCTGTTTGGAACTCTTCC 1105
|||| ||||| |||||| |||||||||||||| ||| |||||||||||||||||||||
Sbjct 839 GCGGAGAGAGAGTTCCTGTGTTGCCTTCACAGAA-AAAGCTATCTGTTTGGAACTCTTCC 897
Query 1106 AAGCG-GATAGAGAAACCTAGGAGGACGTCAGTTGATGGGAGAGTAAGTGTGGGCGTTGA 1164
|| || | | |||||||| ||||||| ||| ||||| ||||| ||||||||||| || ||
Sbjct 898 AAACGTG-TCGAGAAACCGAGGAGGATGTCTGTTGACGGGAGGGTAAGTGTGGGTGTAGA 956
Query 1165 TAGAGCGTTTGAGAAGATGAATATGTGGGGGAA-CGAAATCGGTGAAGGAGGTGCTGATA 1223
|||||||||||||||||||||||||| |||||| ||||| ||| ||||| | ||||||||
Sbjct 957 TAGAGCGTTTGAGAAGATGAATATGT-GGGGAACCGAAAGCGGAGAAGGCGCTGCTGATA 1015
Query 1224 -TGA---G-----GA--A-GGAGTTGGATGCAGAGTTGATGAGATTGGACGCTGAAGG-- 1269
||| | || | ||| || ||||| || |||||||| | || || |||||
Sbjct 1016 TTGATTCGACCACGAGGAGGGACTTAGATGCTGAAATGATGAGACTAGAGGCCGAAGGCT 1075
Query 1270 TC-TTCAGAGCCTGAAATCGAGCCCTGTTCCTATGAAACTGCCAAAGGCAGGGAGGAAGC 1328
|| |||||||||||| | ||||||||| ||||||| | |||||| ||||||||||||||
Sbjct 1076 TCATTCAGAGCCTGAGACCGAGCCCTGCACCTATGAGATTGCCAAGGGCAGGGAGGAAGC 1135
Query 1329 AAGGGGAGACGATATCCAAAGGCCATCGCAATTACGAGCTTATGCTTAATCTACAG-TTA 1387
|||| ||||| ||||| |||||||| || ||||||||||||||||||||||||||| ||
Sbjct 1136 AAGGCGAGACAATATCTAAAGGCCACCGGAATTACGAGCTTATGCTTAATCTACAGCTT- 1194
Query 1388 GGAATCAGGCATTCTGTCGGAAGACAAGCTCCAGCGGCATCTCTTGATCTGAAGCCTTCA 1447
|||||||| ||| |||| |||| ||||||||| | | ||||||||||| |||| |||
Sbjct 1195 GGAATCAGACATGCTGTTGGAAAACAAGCTCCGGTTGTGTCTCTTGATCTTAAGCATTCG 1254
Query 1448 GCTTTCGATCCAAAAGATAAGATATGGAGGAGGTTTCCGCGC-GAAGGAACCAAGTACAC 1506
|||||||||||||| || ||| |||||| || ||||| | | |||||||| || |||||
Sbjct 1255 GCTTTCGATCCAAAGGAGAAGGTATGGACAAGATTTCCAC-CAGAAGGAACAAAATACAC 1313
Query 1507 ACCTCCACATCAATCTACTGAATTCAAATGGAAAGATTATTGCCCACTAGTTTTCAGGAG 1566
|||||| |||||||||| |||||||||||||||||| ||||||||| ||||||| |||||
Sbjct 1314 ACCTCCTCATCAATCTAGTGAATTCAAATGGAAAGACTATTGCCCATTAGTTTTTAGGAG 1373
Query 1567 CTTGAGGAAGCTATTCAAAGTAGACCCAGCTGATTACATGTTATCGATCTGTGGGAATGA 1626
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1374 CTTGAGGAAGCTATTCAAGGTAGACCCAGCTGATTACATGTTATCGATCTGCGGGAATGA 1433
Query 1627 TGCCCTTCGAGAACTATCATCCCCTGGAAAAAGTGGGAGttttttttATTTAACAAACGA 1686
||| ||||| || |||||||||||||| |||||||| || ||||| || || ||||| ||
Sbjct 1434 TGCACTTCGGGAGCTATCATCCCCTGGTAAAAGTGGAAGCTTTTTCTACTTGACAAATGA 1493
Query 1687 TGATCGTTACATGATAAAAACAATGAAGAAGTCGGAAACAAAAGTGCTTCTGGGGATGCT 1746
|||||||||||||||||| |||||||||||||| ||||| |||||||||||| |||||||
Sbjct 1494 TGATCGTTACATGATAAAGACAATGAAGAAGTCTGAAACTAAAGTGCTTCTGAGGATGCT 1553
Query 1747 TGCAGCATATTATAACCATGTTCGAGCATTTGAGAACTCTTTGGTAATCAGATTCTTTGG 1806
|||||||||||| |||||||||||||||||||| ||| ||||||| || ||||||| ||
Sbjct 1554 TGCAGCATATTACAACCATGTTCGAGCATTTGAAAACACTTTGGTCATTAGATTCTACGG 1613
Query 1807 TCTACACTGTGTGAAATTGAATGGACCAACCCAAAAGAAGGTCCGATTCGTCATTATGGG 1866
||| ||||||||||| |||| |||||||| |||||||||||| || || |||||||||||
Sbjct 1614 TCTCCACTGTGTGAAGTTGACTGGACCAATCCAAAAGAAGGTGCGGTTTGTCATTATGGG 1673
Query 1867 TAATCTGTTTTGTTCTAAGTACTCTGTTCACAGACGCTTTGATCTAAAAGGATCTTCTCT 1926
||||| |||||||| ||||||| |||| |||||||||||| | ||||||||||||||
Sbjct 1674 AAATCTATTTTGTTCCGAGTACTCCATTCATAGACGCTTTGATTTGAAAGGATCTTCTCT 1733
Query 1927 TGGCCGTACAACTGACAAACCTGAATCAGAAATCGATTCAAACACGATCTTAAAAGACCT 1986
||||||||||||||| |||||||||||||||||| ||||||| || ||||| ||||| ||
Sbjct 1734 TGGCCGTACAACTGATAAACCTGAATCAGAAATCAATTCAAATACAATCTTGAAAGATCT 1793
Query 1987 CGACCTGAATTTCATTTTCAGATTGCAGAAAGCATGGTACCAAGAATTCATCAGGCAAAT 2046
|| |||||||||||||| ||| | |||||||| |||||||||||||||||||||||| |
Sbjct 1794 TGATCTGAATTTCATTTTTAGACTACAGAAAGCTTGGTACCAAGAATTCATCAGGCAAGT 1853
Query 2047 CGATAAAGACTGCGAGTTTCTAGAACAGGAGAGAATCATGGATTACAGTCTTCTAGTTGG 2106
||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1854 CGACAAAGACTGCGAGTTTCTAGAACAGGAGAGAATAATGGATTACAGTCTTCTGGTTGG 1913
Query 2107 GATTCACTTCAGAGAAGCTTCTGTCGCTGGAGAGCTGATTCCTTCTGGAGCTCGAACGCC 2166
|||||| ||||||||||| || |||||||| ||||||||||||||||||||||| |||||
Sbjct 1914 GATTCATTTCAGAGAAGCATCAGTCGCTGGTGAGCTGATTCCTTCTGGAGCTCGCACGCC 1973
Query 2167 CATTGGTGAATCAGAAGAAGAATCAGGCCCTCGTCTTTCTAGAGCAGAGGTTGATGAGCT 2226
|||||||||| ||||| ||||||| ||||||||| ||||||||||| || ||| ||||
Sbjct 1974 TATTGGTGAATTTGAAGATGAATCAGCCCCTCGTCTCTCTAGAGCAGACGTGGATCAGCT 2033
Query 2227 TCTTTCAGATCCCT-CAAGGTGGGCAAGTATTAGA-TTGG-GGACAAACATGCCAGCACG 2283
||| || ||||| | |||||||||| ||||||||| |||| || ||| ||||||||| ||
Sbjct 2034 TCTCTCTGATCC-TACAAGGTGGGCTAGTATTAGACTTGGAGG-CAA-CATGCCAGCTCG 2090
Query 2284 TGCAGAGAGAACGATGAGAAAAAACGACAGCGAGCTGCAGCTTGTGGGAGAGCCTACAGG 2343
|||||||| || ||||| | || |||| | ||| | ||||| || || || || |||||
Sbjct 2091 AGCAGAGAGGACAATGAGGAGAAGCGACTGTGAGTTCCAGCTAGTTGGTGAACCGACAGG 2150
Query 2344 AGAGTTCTACGAAGTGGTGATGATATTTGGTATAATTGACATTCTTCAGGATTATGATAT 2403
||||| ||| || || || ||||| ||||| || || || |||||||| || ||||| ||
Sbjct 2151 AGAGTACTATGAGGTTGTCATGATCTTTGGAATCATAGATATTCTTCAAGACTATGACAT 2210
Query 2404 CAGCAAGAAGCTTGAACACGCTTACAAGAGCATACAGTATGATCCTTCCTCTATATCTGC 2463
||||||||| || |||||||||||||||||||| ||||| |||||| | || || || ||
Sbjct 2211 CAGCAAGAAACTAGAACACGCTTACAAGAGCATCCAGTACGATCCTACTTCAATCTCAGC 2270
Query 2464 GGTTGATCCGAGACAATACTCTAGGCGTTTCCGTGACTTT-ATCTTCAAGGTCTTCACAG 2522
|| |||||||| | ||||| || ||||||||||| ||| ||||||||||||||||| |
Sbjct 2271 CGTCGATCCGAGGCTGTACTCGAGACGTTTCCGTGA-TTTCATCTTCAAGGTCTTCACTG 2329
Query 2523 ATGACAATTGA 2533
| || ||||||
Sbjct 2330 AGGATAATTGA 2340
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104329181055
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5