BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G41225.1

Length=459
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg483192 jgi|Araly1|483192|fgenesh2_kg.4__2252__AT2G41225.1         645    0.0  


> Ahg483192 jgi|Araly1|483192|fgenesh2_kg.4__2252__AT2G41225.1
Length=468

 Score =  645 bits (349),  Expect = 0.0
 Identities = 432/470 (92%), Gaps = 13/470 (3%)
 Strand=Plus/Plus

Query  1    AAGATTTACATACGAAAGGATCGTCGAAATGTTTGTGATTGGAGTGGTGATGGTGCTATT  60
            ||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct  1    AAGATTTACATACAAAAGGATCATCGAAATGTTTCTGATTGGAGTGGTGATGGTGCTATT  60

Query  61   GGCGGTTCTTCCAGCCGTTCTGCCGCCGCTTCCGCCGCCGCCGATGATATTGATGGGAAT  120
            || ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  61   GGTGGTTCTTCCGGCCGTTCTGCCGCCGCTTCCGCCGCCGCCGATGATATTTATGGGAAT  120

Query  121  TCCGGTGGTGCTGATGCTAATGCTTATTTACTTAGCCATTTATTATCCACCTCATCAAG-  179
            |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || 
Sbjct  121  TCCGGTGGTGCTGATGCTAATGCTTATTTACTTAGCCATTCATTATCCACCTCATC-AGT  179

Query  180  C---TCATTTTCTCTCTTCATCTTCCTTTGACACTACTTCTAGGCATGTAATGTGATGGT  236
            |   |||| |||||||||| |||||||||||||||||| ||||||||||||||||||| |
Sbjct  180  CTGATCATCTTCTCTCTTCTTCTTCCTTTGACACTACTCCTAGGCATGTAATGTGATGAT  239

Query  237  AGTGAGACAATGAGTCGATGATC-CAGATGACTCAACTCACATATGTGAATGCGTCGTCG  295
            |||| ||||||| ||||||||||  ||||||| |||| ||||||||||||||||||||||
Sbjct  240  AGTGTGACAATGTGTCGATGATCTAAGATGACACAACGCACATATGTGAATGCGTCGTCG  299

Query  296  TTTGATGATAATTGTGAATCCATGCAGTTTCTATATGATTAAAATTTAGACCCttttt--  353
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  
Sbjct  300  TTTGATGATAATTGTGAATCCATGCAGTTTCTATATGATTCAAATTTAGACCCTTTTTCT  359

Query  354  -atgttttttctttt-cttttc-gttttAGGGTGATTCGAGTTGGATCGTCTGGTAAGAG  410
             ||||||||| |||| |||||| |||| ||  | |||||||||||||| |||| ||||||
Sbjct  360  TATGTTTTTTTTTTTTCTTTTCTGTTT-AGCTTAATTCGAGTTGGATCTTCTGATAAGAG  418

Query  411  TCATTGTAAAATTTGAA-GTGTAATTTCTAATTTTCTAATCAGTTGAACC  459
            ||||||||||||||||| ||||||||||||||| |||||||| |||||||
Sbjct  419  TCATTGTAAAATTTGAAAGTGTAATTTCTAATTCTCTAATCAATTGAACC  468



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16597681215


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5