BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G41230.1

Length=749
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg934943 jgi|Araly1|934943|scaffold_402931.1                        505    2e-142


> Ahg934943 jgi|Araly1|934943|scaffold_402931.1
Length=308

 Score =  505 bits (273),  Expect = 2e-142
 Identities = 285/291 (98%), Gaps = 0/291 (0%)
 Strand=Plus/Plus

Query  41   TAATGGAAAATGAGGGTTCATGATCAACGGCTGAGATTTGATGTCACACCCAAGCCGATG  100
            |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct  12   TAATGGAAAATGAGGGTTCATGATCAACGGCTGAGATTTGATGTCACACCAAAGCCAATG  71

Query  101  GGTTTGAACGGAAGTTCTTTGATCACGGCAAGATCCGTCGCActtcttctctttctctct  160
            ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  72   GGTTTGACCGGAAGTTCTTTAATCACGGCAAGATCCGTCGCACTTCTTCTCTTTCTCTCT  131

Query  161  ctgcttcttctgattctGCCACCGTTCCTGCCGCCGCTTCCACCGCCTCCGGCGACActc  220
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  132  CTGCTTCTTCTGATTCTGCCACCGTTCCTGCCGCCGCTTCCACCGCCTCCGGCGACACTC  191

Query  221  ctcctccttcctctactcctcatgattctcctcattttcttggctttttctccttctAAT  280
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  192  CTCCTCCTTCCTCTTCTCCTCATGATTCTCCTCATTTTCTTGGCTTTTTCTCCTTCTAAT  251

Query  281  GAGCCCAGCCTCGCCGTTGAACCTCTCGACCCCTGATGTCGGCGACTTGCG  331
            ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  252  GAGCCCAGCCTCGCCGTGGAACCTCTCGACCCCTGATGTCGGCGACTTGCG  302



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27600991908


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5